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Search of human proteins with 217416362
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
(291 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 610 e-175
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 258 3e-69
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 144 7e-35
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 56 3e-08
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 56 4e-08
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 56 4e-08
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 54 1e-07
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 54 1e-07
gi|193788659 cleavage and polyadenylation specific factor 4-like... 52 5e-07
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 47 2e-05
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 47 2e-05
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 47 2e-05
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 46 3e-05
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 46 4e-05
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 43 3e-04
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 41 0.001
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 41 0.001
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 41 0.001
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap... 41 0.001
gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens] 40 0.002
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 39 0.005
gi|15812180 butyrate response factor 1 [Homo sapiens] 38 0.009
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo... 38 0.009
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ... 38 0.009
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ... 38 0.012
gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo ... 38 0.012
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 38 0.012
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo... 37 0.016
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 37 0.016
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 37 0.016
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 610 bits (1573), Expect = e-175
Identities = 291/291 (100%), Positives = 291/291 (100%)
Query: 1 MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISP 60
MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISP
Sbjct: 1 MDFENLFSKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISP 60
Query: 61 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKD 120
KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKD
Sbjct: 61 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKD 120
Query: 121 TPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLS 180
TPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLS
Sbjct: 121 TPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLS 180
Query: 181 QAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENC 240
QAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENC
Sbjct: 181 QAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENC 240
Query: 241 LYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKKSCK 291
LYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKKSCK
Sbjct: 241 LYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKKSCK 291
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
Length = 1189
Score = 258 bits (660), Expect = 3e-69
Identities = 143/294 (48%), Positives = 191/294 (64%), Gaps = 28/294 (9%)
Query: 22 SDERIDDEIDTEVEETQEEKIK----LECEQIPKKFRH----SAISPKSSLHRKS-RSKD 72
SD+ D +D++VE T+ K IP R S I+ K H K +SK+
Sbjct: 77 SDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSYITSKKGQHNKKFKSKE 136
Query: 73 YD---VYSDNDICS----------QESEDNFAKELQQYIQAREMANAAQ----PEESTKK 115
YD YSD++ + QE+E++FA +L+QY QA+E +N A +ES KK
Sbjct: 137 YDEYSTYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKETSNIALGSSFSKESGKK 196
Query: 116 EGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPG-NKGSNALLRNSGSQEEDGKPKE 174
+ +K Q +Q+ K+ G G KK+KRK G NKG N + QE + KP +
Sbjct: 197 QRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERGGRTNKGPNVFSVSDDFQEYN-KPGK 255
Query: 175 KQQHLSQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYC 234
K + ++Q FINQHTVE KGKQICKYFLE +CIKGDQCKFDHDAE+EK+KE+CKFY+QGYC
Sbjct: 256 KWKVMTQEFINQHTVEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYC 315
Query: 235 TRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKK 288
T+GENC+Y+HNE+PCKFYH+G KCYQG+ CKFSH LT ET++LL KVL+T+++
Sbjct: 316 TKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLLDKVLNTDEE 369
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 144 bits (364), Expect = 7e-35
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 9/206 (4%)
Query: 85 ESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKM 144
E E++F +E Y ++ E +E +K+ + ++ + + L G G + +
Sbjct: 279 EDEEDFYEEEMDYGESEEPMGDDDYDEYSKE--LNQYRRSKDSRGRGLSRGRGRGSRGRG 336
Query: 145 KRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQ------QHLSQAFINQHTV-ERKGKQIC 197
K G G GS + G +++ E + S+ H ++KGK IC
Sbjct: 337 KGMGRGRGRGGSRGGMNKGGMNDDEDFYDEDMGDGGGGSYRSRDHDKPHQQSDKKGKVIC 396
Query: 198 KYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEYPCKFYHTGTK 257
KYF+E +C GD C F HD E+ KK+E+CKFY+ G+C R ENC Y+H ++PCK YHT
Sbjct: 397 KYFVEGRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGN 456
Query: 258 CYQGEYCKFSHAPLTPETQELLAKVL 283
C G+ C FSH PLT ET+ELL K+L
Sbjct: 457 CINGDDCMFSHDPLTEETRELLDKML 482
Score = 28.1 bits (61), Expect = 9.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 74 DVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQK-NKNL 132
D D ++ E ED+ A+E Q + PE S K++G K + ++K ++ L
Sbjct: 52 DDREDGELEEGELEDDGAEETQD--------TSGGPERSRKEKGEKHHSDSDEEKSHRRL 103
Query: 133 KAGHKNGKQKKMKR 146
K K ++K+ +R
Sbjct: 104 KRKRKKEREKEKRR 117
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 56.2 bits (134), Expect = 3e-08
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
KQI C+YF+ C +G QC F HD K +CK+Y +GYC G C Y H
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
Score = 39.3 bits (90), Expect = 0.004
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 222 KKEMCKFYVQGYCTRGENCLYLH---NEYP---CKFYHTGTKCYQGEYCKFSH 268
K+ C++++ G C G CL+ H N P CK+Y G C G C++ H
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKG-YCAYGTRCRYDH 55
Score = 32.3 bits (72), Expect = 0.50
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 180 SQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDH 215
SQ + K ICKY+ + C G +C++DH
Sbjct: 20 SQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
Score = 28.9 bits (63), Expect = 5.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 222 KKEMCKFYVQGYCTRGENCLYLHNE 246
++++C + G C G+ C+YLH E
Sbjct: 167 EQQLCPYAAAGECRFGDACVYLHGE 191
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 55.8 bits (133), Expect = 4e-08
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 189 VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY- 247
+++ G +C++FL+ C KG C F H + +K +CK +++G C +G+ C +LH EY
Sbjct: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLH-EYD 89
Query: 248 -----PCKFYHTGTKCYQGEYCKFSHAPLTPETQ 276
C FY +C E C F H + PE++
Sbjct: 90 MTKMPECYFYSKFGECSNKE-CPFLH--IDPESK 120
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ-GYCTRGENCLYLHNE-----YPC 249
+CK++L C KGDQC+F H+ ++ K E C FY + G C+ E C +LH + C
Sbjct: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDC 124
Query: 250 KFYHTGTKCYQGEYCKFSH 268
+Y G C G C+ H
Sbjct: 125 PWYDRGF-CKHGPLCRHRH 142
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 55.8 bits (133), Expect = 4e-08
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 12/94 (12%)
Query: 189 VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY- 247
+++ G +C++FL+ C KG C F H + +K +CK +++G C +G+ C +LH EY
Sbjct: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLH-EYD 89
Query: 248 -----PCKFYHTGTKCYQGEYCKFSHAPLTPETQ 276
C FY +C E C F H + PE++
Sbjct: 90 MTKMPECYFYSKFGECSNKE-CPFLH--IDPESK 120
Score = 48.1 bits (113), Expect = 9e-06
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ-GYCTRGENCLYLHNE-----YPC 249
+CK++L C KGDQC+F H+ ++ K E C FY + G C+ E C +LH + C
Sbjct: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDC 124
Query: 250 KFYHTGTKCYQGEYCKFSH 268
+Y G C G C+ H
Sbjct: 125 PWYDRGF-CKHGPLCRHRH 142
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 54.3 bits (129), Expect = 1e-07
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE 246
KQ+ C+YF+ C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
Score = 38.1 bits (87), Expect = 0.009
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 206 IKGDQCKFDHDAE---IEKKKEMCKFYVQGYCTRGENCLYLHNE 246
++G K + + E +E KK++C + G C GENC+YLH +
Sbjct: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
Score = 33.9 bits (76), Expect = 0.17
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKK 223
+CKYF CI GD+C+++H +++++
Sbjct: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 54.3 bits (129), Expect = 1e-07
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 194 KQI-CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE 246
KQ+ C+YF+ C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
Score = 38.1 bits (87), Expect = 0.009
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 206 IKGDQCKFDHDAE---IEKKKEMCKFYVQGYCTRGENCLYLHNE 246
++G K + + E +E KK++C + G C GENC+YLH +
Sbjct: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
Score = 33.9 bits (76), Expect = 0.17
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKK 223
+CKYF CI GD+C+++H +++++
Sbjct: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 52.4 bits (124), Expect = 5e-07
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 196 ICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ-GYCTRGENCLYLH-----NEYPC 249
+CK++L C KGD CKF H ++ + E C FY + G C+ E C +LH C
Sbjct: 67 VCKHWLRGLCKKGDHCKFLHQYDLTRMPE-CYFYSKFGDCSNKE-CSFLHVKPAFKSQDC 124
Query: 250 KFYHTGTKCYQGEYCKFSHAP 270
+Y G C G CK+ H P
Sbjct: 125 PWYDQGF-CKDGPLCKYRHVP 144
Score = 52.0 bits (123), Expect = 6e-07
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 189 VERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNEY- 247
+++ +C +F + C KG C F HD +K +CK +++G C +G++C +LH +Y
Sbjct: 33 MDKSASAVCNFFTKGLCEKGKLCPFRHDRG--EKMVVCKHWLRGLCKKGDHCKFLH-QYD 89
Query: 248 -----PCKFYHTGTKCYQGEYCKFSHAPLTPETQE 277
C FY C E C F H ++Q+
Sbjct: 90 LTRMPECYFYSKFGDCSNKE-CSFLHVKPAFKSQD 123
Score = 31.6 bits (70), Expect = 0.86
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 195 QICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLY 242
Q C ++ + C G CK+ H I MC Y+ G+C G C +
Sbjct: 122 QDCPWYDQGFCKDGPLCKYRHVPRI-----MCLNYLVGFCPEGPKCQF 164
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 3 FENLFS-KPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISPK 61
F N + PP+ + A + + +E +E + + +P + ++P
Sbjct: 426 FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVAVSSPAVPPPTK--VVAPP 483
Query: 62 SSLHRKSRSKDYDVYSDNDICSQESEDNFAK---ELQQYIQA--REMANAAQPEESTKKE 116
SS S S SD+D + +SE+ A+ ELQ+ ++A ++A +QP+++ K+
Sbjct: 484 SSSDSSSDSS-----SDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKK 538
Query: 117 GVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEK 175
KD + K+K+K + +N KK K K P P N ++ S++E K K
Sbjct: 539 KEKDKKEKKKEKHKRKEEVEEN---KKSKAKEPPPKKTKKNNSSNSNVSKKEPAPMKSK 594
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 47.4 bits (111), Expect = 2e-05
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 3 FENLFS-KPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISPK 61
F N + PP+ + A + + +E +E + + +P + ++P
Sbjct: 426 FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVAVSSPAVPPPTK--VVAPP 483
Query: 62 SSLHRKSRSKDYDVYSDNDICSQESEDNFAK---ELQQYIQA--REMANAAQPEESTKKE 116
SS S S SD+D + +SE+ A+ ELQ+ ++A ++A +QP+++ K+
Sbjct: 484 SSSDSSSDSS-----SDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKK 538
Query: 117 GVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEK 175
KD + K+K+K + +N KK K K P P N ++ S++E K K
Sbjct: 539 KEKDKKEKKKEKHKRKEEVEEN---KKSKAKEPPPKKTKKNNSSNSNVSKKEPAPMKSK 594
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 47.0 bits (110), Expect = 2e-05
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 187 HTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLHNE 246
H V ++ +C YFL+ C C + H + +K E+C +++GYC G C H
Sbjct: 719 HHVSKEKMPVCSYFLKGIC-SNSNCPYSH-VYVSRKAEVCSDFLKGYCPLGAKCKKKHTL 776
Query: 247 YPCKFYHTGTKCYQGEYCKFSH 268
F G C +G C+ H
Sbjct: 777 LCPDFARRGA-CPRGAQCQLLH 797
Score = 39.3 bits (90), Expect = 0.004
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 42/170 (24%)
Query: 143 KMKRKWPGPGNKGSNALLRN-----SGSQEEDGKPKEKQQHLSQAFINQHTVER-KGKQI 196
K+ + P + GS LLR +GS + Q+ L A I Q R K K+
Sbjct: 615 KLSKTSGQPSDAGSRPLLRTGRLDPAGSCSRSLASRAVQRSL--AIIRQARQRREKRKEY 672
Query: 197 CKYFLE-RKCIKGDQCKFDHDAE--------------------------IEKKKEMCKFY 229
C Y+ +C +G++C + HD E ++K +C ++
Sbjct: 673 CMYYNRFGRCNRGERCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYF 732
Query: 230 VQGYCTRGENCLYLH-----NEYPCKFYHTGTKCYQGEYCKFSHAPLTPE 274
++G C+ NC Y H C + G C G CK H L P+
Sbjct: 733 LKGICS-NSNCPYSHVYVSRKAEVCSDFLKG-YCPLGAKCKKKHTLLCPD 780
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 46.2 bits (108), Expect = 3e-05
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 109 PEESTKKEGVKDTPQAAKQK---NKNLKAGHKNG-KQKKMKRKWP-----GPGNKGSNAL 159
P++ + G K Q K+K +K +K G KQ+K + G N A
Sbjct: 3 PKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQ 62
Query: 160 LRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQ------ICKYFLERKCIKGDQCKF 213
++D K KE Q+ L++ F ++ K +C +F + +C KGD+CKF
Sbjct: 63 SEAEKKLKKDDKKKELQE-LNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKF 121
Query: 214 DHDAEIEKKKEMCKFYV 230
HD +E+K E Y+
Sbjct: 122 SHDLTLERKCEKRSVYI 138
Score = 32.0 bits (71), Expect = 0.66
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 220 EKKKEMCKFYVQGYCTRGENCLYLHN 245
+ K +C F+ QG CT+G+ C + H+
Sbjct: 99 DPKSVVCAFFKQGQCTKGDKCKFSHD 124
Score = 28.9 bits (63), Expect = 5.6
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 171 KPKEKQQHLSQAFINQHTV-ERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFY 229
K KQQ +A +Q ++ +Q+ + E+K K D+ K E+++ E+ K
Sbjct: 34 KKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKK-----ELQELNELFKPV 88
Query: 230 VQGY-CTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
V ++G + C F+ G +C +G+ CKFSH
Sbjct: 89 VAAQKISKGAD----PKSVVCAFFKQG-QCTKGDKCKFSH 123
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 45.8 bits (107), Expect = 4e-05
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 5/196 (2%)
Query: 17 KTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKKFRHSAISPKSSLHRKSRSKDYDVY 76
K + +E++++ E+E+++E+ + K+ R KS S S
Sbjct: 56 KALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSS 115
Query: 77 SDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGH 136
S +D +E + ++ ++ + ++ ES KE VK K+K+K+
Sbjct: 116 SSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKK-----KKKSKDETEKE 170
Query: 137 KNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQI 196
K+ + KRK P +K ++ + EED + K+K++ + + ++K KQ
Sbjct: 171 KDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQH 230
Query: 197 CKYFLERKCIKGDQCK 212
K+ ++K G K
Sbjct: 231 KKHSKKKKKKSGSSHK 246
Score = 33.5 bits (75), Expect = 0.23
Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 18 TATDSDERIDDEIDTEVEETQEEKIKLE--CEQIPKKFRHSAISPKSSLHRKSRSKDY-- 73
+++DS D D E ++ + K K + S K S+ +K +SKD
Sbjct: 109 SSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETE 168
Query: 74 ---DVYS-----------DNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGVK 119
DV S D + S+ S ++ +E Q + R Q +E KK+ K
Sbjct: 169 KEKDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKK 228
Query: 120 DTPQAAKQKNKNLKAGHKN 138
+ +K+K K + HK+
Sbjct: 229 QHKKHSKKKKKKSGSSHKS 247
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 43.1 bits (100), Expect = 3e-04
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 9/174 (5%)
Query: 32 TEVEETQEEKIKLECEQIPKKFRHSAISPKSSLHRKSRSKDYDVYSDNDICSQESEDNFA 91
TE +EE + + +Q+ KK S + S +K++ K+ S NDI +
Sbjct: 41 TEEIAEEEETVFPKAKQVKKKAEPSEVDMNSPKSKKAKKKEEP--SQNDISPKTKSLRKK 98
Query: 92 KE-LQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKW-- 148
KE +++ + + + + EE +++E D P+ K K + G K K+K +
Sbjct: 99 KEPIEKKVVSSKTKKVTKNEEPSEEE--IDAPKPKKMKKEKEMNGETREKSPKLKNGFPH 156
Query: 149 PGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAF-INQHTVE-RKGKQICKYF 200
P P S A S S+ E P E+++ F I++ T++ KG+ + F
Sbjct: 157 PEPDCNPSEAASEESNSEIEQEIPVEQKEGAFSNFPISEETIKLLKGRGVTFLF 210
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 188 TVERKGKQICKYFLER-KCIKGDQCKFDHD-AEIEK-------KKEMC-KFYVQGYCTRG 237
T R ++C+ F E +C G +C+F H E+ + K E+C KFY+QG C G
Sbjct: 100 TPSRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYG 159
Query: 238 ENCLYLHN 245
C ++HN
Sbjct: 160 SRCHFIHN 167
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 41.2 bits (95), Expect = 0.001
Identities = 38/218 (17%), Positives = 97/218 (44%), Gaps = 14/218 (6%)
Query: 33 EVEETQEEKIKLECEQIPKKFRHSAISPKSSLHRKSRSKDYDVYS-DNDIC-SQESEDNF 90
E++E Q ++++ +I R+ + SP ++ + KD+ S + DI + E +D +
Sbjct: 390 EIKENQRSPVRVKERKITDH-RNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKY 448
Query: 91 AKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPG 150
++++ +++ + + + +S +++ + + + ++++ H+N K+K+ + G
Sbjct: 449 KNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKG 508
Query: 151 PG-----NKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQICKYFLERKC 205
+K + L + ++ + K KEK + ++ KGK +
Sbjct: 509 KDQERSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSR--SRECDITKGKHSYNSRTRERS 566
Query: 206 IKGDQCK----FDHDAEIEKKKEMCKFYVQGYCTRGEN 239
D+ + HD + + KE ++ Q Y RG +
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRS 604
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 41.2 bits (95), Expect = 0.001
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 19/180 (10%)
Query: 59 SPKSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANAAQPEESTKKEGV 118
SP ++SR+ D + D D S S+D + + + + +S ++E
Sbjct: 14 SPSKEERKRSRTPDRERDRDRDRKSSPSKDRKRHRSRDRRRGGSRSRSRSRSKSAERERR 73
Query: 119 KDTPQAAKQKNKNLKA------GHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEED--G 170
+ K++++N K GH+ K +K PG G + R+S EED G
Sbjct: 74 HKERERDKERDRNKKDRDRDKDGHRRDKDRKRSSLSPGRGKDFKSRKDRDSKKDEEDEHG 133
Query: 171 KPKEKQQHLSQAFI-----NQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEM 225
K K Q LS + + E K K + K E + +K Q E+E+++ M
Sbjct: 134 DKKPKAQPLSLEELLAKKKAEEEAEAKPKFLSKAEREAEALKRRQ------QEVEERQRM 187
>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
sapiens]
Length = 886
Score = 40.8 bits (94), Expect = 0.001
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 43/175 (24%)
Query: 131 NLKAGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVE 190
N K G ++ K K PGPG +++ + +Q +P EK QH + ++ + E
Sbjct: 63 NNKRGAAKRQEDKTMSKGPGPGGSAASSAPPAATAQVLQAQP-EKPQHYT--YLKEFRTE 119
Query: 191 RKGKQICKYFLERKCI--KGDQCKFDHDAEIEKKKEM--------------CKFY--VQG 232
+ C F++ KC + C H +++ + C Y G
Sbjct: 120 Q-----CPLFVQHKCTQHRPYTCFHWHFVNQRRRRSIRRRDGTFNYSPDVYCTKYDEATG 174
Query: 233 YCTRGENCLYLH-------NEYPCKFYHTGTKCYQ----------GEYCKFSHAP 270
C G+ C +LH Y ++Y TG ++ G +C F+H P
Sbjct: 175 LCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNCTKNGLHCAFAHGP 229
Score = 31.2 bits (69), Expect = 1.1
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 204 KCIKGDQCKFDHDA-------EIEKKKEMCKFYVQGYCTRGENCLYLHNEYP 248
KC GD C++ H EI K + G C RG C + H E P
Sbjct: 347 KCENGDACQYCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQP 398
Score = 30.0 bits (66), Expect = 2.5
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 27/103 (26%)
Query: 203 RKCIKGDQCKFDHDAEIEKKKEMCKFYVQ---------------GYCTRGENCLYLHNEY 247
R C +G C + H+++ ++ Y G C G+ C Y H
Sbjct: 302 RLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQYCHTRT 361
Query: 248 PCKFY---HTGTKCY---------QGEYCKFSHAPLTPETQEL 278
+F+ + TKC +G +C F+H P + +L
Sbjct: 362 EQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDL 404
>gi|114842410 zinc finger CCCH-type containing 11A [Homo sapiens]
Length = 810
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 197 CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH-------NEYPC 249
C +F C KGD C F H + +C + +G C R + C + H +E PC
Sbjct: 8 CYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFR-QVCRFRHMEIDKKRSEIPC 66
Query: 250 KFYHTGTKCYQGEYCKFSH 268
+ + T C Q C F H
Sbjct: 67 YWENQPTGC-QKLNCAFHH 84
Score = 35.4 bits (80), Expect = 0.059
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 224 EMCKFYVQGYCTRGENCLYLH------NEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQE 277
E C F+ CT+G++C + H NE C + G +C++ + C+F H + + E
Sbjct: 6 EDCYFFFYSTCTKGDSCPFRHCEAAIGNETVCTLWQEG-RCFR-QVCRFRHMEIDKKRSE 63
Query: 278 L 278
+
Sbjct: 64 I 64
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 38.9 bits (89), Expect = 0.005
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 20/160 (12%)
Query: 85 ESEDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKM 144
E E++ +L+ +A + E E V + P A Q+++ KAG ++ ++K
Sbjct: 103 EGEEDRTSDLRD--EASSVTRELDEHELDYDEEVPEEPAPAVQEDEAEKAGAEDDEEKG- 159
Query: 145 KRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQICKYFLERK 204
G + A +++ G +E KEK++ I+ ++
Sbjct: 160 ----EGTPREEGKAGVQSVGEKESLEAAKEKKKEDDDGEIDDGEIDDDD----------- 204
Query: 205 CIKGDQCKFDHDAEIEKKKEMCKFYVQGYCTRGENCLYLH 244
++ + K D ++ + + C+F+++G CT G NC ++H
Sbjct: 205 -LEEGEVKDPSDRKV-RPRPTCRFFMKGNCTWGMNCRFIH 242
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 38.1 bits (87), Expect = 0.009
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 136 HKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGK--PKEKQQHLSQAFINQHTVERKG 193
H+N +K + P P ++ R+ E + P +KQ Q +++ E
Sbjct: 63 HQNQLLSSLKGE-PAPALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQVNSSRYKTE--- 118
Query: 194 KQICKYFLER-KCIKGDQCKFDHDAEIEK--------KKEMCK-FYVQGYCTRGENCLYL 243
+C+ F E C GD+C+F H + K E+C+ F+ G+C G C ++
Sbjct: 119 --LCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFI 176
Query: 244 HN 245
HN
Sbjct: 177 HN 178
Score = 29.3 bits (64), Expect = 4.3
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 15/62 (24%)
Query: 222 KKEMCK-FYVQGYCTRGENCLYLHNEYP--------------CKFYHTGTKCYQGEYCKF 266
K E+C+ F G C G+ C + H + C+ +HT C G C F
Sbjct: 116 KTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 175
Query: 267 SH 268
H
Sbjct: 176 IH 177
>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
sapiens]
Length = 735
Score = 38.1 bits (87), Expect = 0.009
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 30/215 (13%)
Query: 61 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANA---AQPEESTKKEG 117
+S + +K + + V + N ++ D+ +Q R++ A P+ +G
Sbjct: 465 RSFILKKPKLSEEVVVAPNQESGMKTADSLRVLSGHLMQTRDLVQPDKPASPKFIVTLDG 524
Query: 118 VKDTPQAAKQKNKNLK-AGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQ 176
V P + +++ G K Q NKG LL + ++
Sbjct: 525 VPSPPGYMSDQEEDMCFEGMKPVNQT-------AASNKGLRGLLHPQQLHLLSRQLEDPN 577
Query: 177 QHLSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGY 233
S A +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 578 GSFSNAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF----- 630
Query: 234 CTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
E CL++H CK+ KC + + C F+H
Sbjct: 631 ---AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 656
>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
sapiens]
Length = 736
Score = 38.1 bits (87), Expect = 0.009
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 30/215 (13%)
Query: 61 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANA---AQPEESTKKEG 117
+S + +K + + V + N ++ D+ +Q R++ A P+ +G
Sbjct: 465 RSFILKKPKLSEEVVVAPNQESGMKTADSLRVLSGHLMQTRDLVQPDKPASPKFIVTLDG 524
Query: 118 VKDTPQAAKQKNKNLK-AGHKNGKQKKMKRKWPGPGNKGSNALLRNSGSQEEDGKPKEKQ 176
V P + +++ G K Q NKG LL + ++
Sbjct: 525 VPSPPGYMSDQEEDMCFEGMKPVNQT-------AASNKGLRGLLHPQQLHLLSRQLEDPN 577
Query: 177 QHLSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGY 233
S A +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 578 GSFSNAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF----- 630
Query: 234 CTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
E CL++H CK+ KC + + C F+H
Sbjct: 631 ---AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 656
>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
sapiens]
Length = 571
Score = 37.7 bits (86), Expect = 0.012
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 179 LSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCT 235
+SQA +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 415 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 465
Query: 236 RGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
E CL++H CK+ KC + + C F+H
Sbjct: 466 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 491
>gi|50541967 zinc finger CCCH-type containing 14 isoform 4 [Homo
sapiens]
Length = 306
Score = 37.7 bits (86), Expect = 0.012
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 19/93 (20%)
Query: 179 LSQAFINQHTVERKGKQI---CKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYCT 235
+SQA +++ +V +K +++ CKY+ C GD+C + H K CKF
Sbjct: 151 MSQAEMSELSVAQKPEKLLERCKYW--PACKNGDECAYHHPISPCKAFPNCKF------- 201
Query: 236 RGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
E CL++H CK+ KC + + C F+H
Sbjct: 202 -AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 227
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 37.7 bits (86), Expect = 0.012
Identities = 51/241 (21%), Positives = 93/241 (38%), Gaps = 51/241 (21%)
Query: 8 SKPPNPALGKTATDSDERIDDEIDTEVEETQEEKIKLECEQIPKK---------FRHSAI 58
S+ P + + A SD D D + + K K + +I KK S
Sbjct: 79 SEEKEPPVSQPAASSDSETSDSDDEWTFGSNKNKKKGKARKIEKKGTMKKQANKTASSGS 138
Query: 59 SPKSSLHRKSRSKDYDVY----------SDNDICSQESE--DNFAKEL----QQYIQARE 102
S K S S ++ +V SD+D S++ E D + ++L + + +
Sbjct: 139 SDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHDGYGEDLMGDEEDRARLEQ 198
Query: 103 MANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPGNKGSNALLRN 162
M + +E + ++ + + K LK K K+KK K+K
Sbjct: 199 MTEKEREQELFNRIEKREVLKRRFEIKKKLKTAKK--KEKKEKKK--------------- 241
Query: 163 SGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKK 222
++E+ + K+K + ++ + H ER+ K+ + K K Q + AE EK+
Sbjct: 242 ---KQEEEQEKKKLTQIQESQVTSHNKERRSKR------DEKLDKKSQAMEELKAEREKR 292
Query: 223 K 223
K
Sbjct: 293 K 293
>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
sapiens]
Length = 730
Score = 37.4 bits (85), Expect = 0.016
Identities = 52/217 (23%), Positives = 82/217 (37%), Gaps = 39/217 (17%)
Query: 61 KSSLHRKSRSKDYDVYSDNDICSQESEDNFAKELQQYIQAREMANA---AQPEESTKKEG 117
+S + +K + + V + N ++ D+ +Q R++ A P+ +G
Sbjct: 465 RSFILKKPKLSEEVVVAPNQESGMKTADSLRVLSGHLMQTRDLVQPDKPASPKFIVTLDG 524
Query: 118 VKDTPQAAKQKNKNLK-AGHKNGKQKKMKRKWPGPGNKGSNALLRNS-----GSQEEDGK 171
V P + +++ G K Q NKG LL Q ED
Sbjct: 525 VPSPPGYMSDQEEDMCFEGMKPVNQT-------AASNKGLRGLLHPQQLHLLSRQLED-- 575
Query: 172 PKEKQQHLSQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQ 231
P + LS A + +ER CKY+ C GD+C + H K CKF
Sbjct: 576 PNAEMSELSVAQKPEKLLER-----CKYW--PACKNGDECAYHHPISPCKAFPNCKF--- 625
Query: 232 GYCTRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSH 268
E CL++H CK+ KC + + C F+H
Sbjct: 626 -----AEKCLFVHPN--CKY---DAKCTKPD-CPFTH 651
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 37.4 bits (85), Expect = 0.016
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 87 EDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKR 146
ED+ +E ++ ++ +++ + K E V+ KQK+K LK K K +K K
Sbjct: 1485 EDDSMEEKPLKVKGKD---SSEKKRKRKLEKVEQLFGEGKQKSKELK---KMDKPRKKKL 1538
Query: 147 KWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQI 196
K +K N L + +EE K KEK + + T +++ K++
Sbjct: 1539 KLGADKSKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKV 1588
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 37.4 bits (85), Expect = 0.016
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 87 EDNFAKELQQYIQAREMANAAQPEESTKKEGVKDTPQAAKQKNKNLKAGHKNGKQKKMKR 146
ED+ +E ++ ++ +++ + K E V+ KQK+K LK K K +K K
Sbjct: 1490 EDDSMEEKPLKVKGKD---SSEKKRKRKLEKVEQLFGEGKQKSKELK---KMDKPRKKKL 1543
Query: 147 KWPGPGNKGSNALLRNSGSQEEDGKPKEKQQHLSQAFINQHTVERKGKQI 196
K +K N L + +EE K KEK + + T +++ K++
Sbjct: 1544 KLGADKSKELNKLAKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKV 1593
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,144,292
Number of Sequences: 37866
Number of extensions: 651779
Number of successful extensions: 3606
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 3083
Number of HSP's gapped (non-prelim): 683
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.