Guide to the Human Genome
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Name: SFT2D1 Sequence: fasta or formatted (159aa) NCBI GI: 21553317
Description:

SFT2 domain containing 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            5.0          8           2
 D aspartate           2.5          4           2
 E glutamate           2.5          4           2
 F phenylalanine       8.2         13           2
 G glycine             6.3         10           2
 H histidine           0.6          1           1
 I isoleucine          5.0          8           1
 K lysine              5.7          9           2
 L leucine            18.2         29           2
 M methionine          3.1          5           1
 N asparagine          1.3          2           1
 P proline             1.9          3           1
 Q glutamine           3.1          5           1
 R arginine            3.1          5           2
 S serine              7.5         12           2
 T threonine           5.7          9           1
 V valine              5.7          9           1
 W tryptophan          3.1          5           2
 Y tyrosine            2.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SFT2 domain containing 1 
SFT2D2                0.629   SFT2 domain containing 2 
SPPL3                 0.027   signal peptide peptidase 3 
FZD8                  0.023   frizzled 8 
FZD5                  0.020   frizzled 5 precursor 
MFSD7                 0.020   major facilitator superfamily domain containing 7 [H...
OTOP2                 0.010   otopetrin 2 
OR56A5                0.010   olfactory receptor, family 56, subfamily A, member ...
OR56A5                0.010   PREDICTED: olfactory receptor, family 56, subfamily...
OR56A5                0.010   PREDICTED: olfactory receptor, family 56, subfamily ...
OR56A5                0.010   PREDICTED: olfactory receptor, family 56, subfamily...
ABCG2                 0.007   ATP-binding cassette, sub-family G, member 2 
WDR20                 0.007   WD repeat domain 20 isoform 3 
WDR20                 0.007   WD repeat domain 20 isoform 4 
WDR20                 0.007   WD repeat domain 20 isoform 1 
WDR20                 0.007   WD repeat domain 20 isoform 2 
OR5K4                 0.007   olfactory receptor, family 5, subfamily K, member 4 ...
SLC9A6                0.007   solute carrier family 9 (sodium/hydrogen exchanger), ...
SLC9A6                0.007   solute carrier family 9 (sodium/hydrogen exchanger)...
OR5K1                 0.007   olfactory receptor, family 5, subfamily K, member 1...
SPINK5L2              0.007   Kazal type serine protease inhibitor 5-like 2 
OR5K3                 0.007   olfactory receptor, family 5, subfamily K, member 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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