Guide to the Human Genome
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Name: SFT2D2 Sequence: fasta or formatted (160aa) NCBI GI: 40786408
Description:

SFT2 domain containing 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           1
 C cysteine            4.4          7           1
 D aspartate           2.5          4           1
 E glutamate           2.5          4           1
 F phenylalanine       8.1         13           1
 G glycine             6.2         10           1
 H histidine           1.2          2           1
 I isoleucine          7.5         12           1
 K lysine              6.2         10           2
 L leucine            15.6         25           2
 M methionine          2.5          4           1
 N asparagine          1.2          2           1
 P proline             2.5          4           1
 Q glutamine           1.9          3           1
 R arginine            3.8          6           1
 S serine              8.8         14           2
 T threonine           5.6          9           1
 V valine              6.2         10           2
 W tryptophan          3.1          5           2
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SFT2 domain containing 2 
SFT2D1                0.629   SFT2 domain containing 1 
TMEM54                0.023   transmembrane protein 54 
SLC45A2               0.013   membrane-associated transporter protein isoform a [H...
SLC45A2               0.013   membrane-associated transporter protein isoform b [H...
SPINK5L2              0.010   Kazal type serine protease inhibitor 5-like 2 
SLC16A14              0.010   solute carrier family 16 (monocarboxylic acid transp...
TAS2R8                0.010   taste receptor, type 2, member 8 
TMEM217               0.010   transmembrane protein 217 isoform 1 
TMEM217               0.010   transmembrane protein 217 isoform 2 
PSEN1                 0.010   presenilin 1 isoform I-467 
PSEN1                 0.010   presenilin 1 isoform I-463 
WDR89                 0.010   WD repeat domain 89 
WDR89                 0.010   WD repeat domain 89 
PIGN                  0.007   phosphatidylinositol glycan anchor biosynthesis, clas...
PIGN                  0.007   phosphatidylinositol glycan anchor biosynthesis, cla...
MPO                   0.007   myeloperoxidase 
PKD1L2                0.007   polycystin 1-like 2 isoform a 
CLCC1                 0.007   Mid-1-related chloride channel 1 isoform 1 
CLCC1                 0.007   Mid-1-related chloride channel 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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