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Search of human proteins with 21536428
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21536428 tryptophan rich basic protein isoform 1 [Homo
sapiens]
(174 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21536428 tryptophan rich basic protein isoform 1 [Homo sapiens] 346 5e-96
gi|226246630 tryptophan rich basic protein isoform 2 [Homo sapiens] 278 2e-75
gi|82830440 Fanconi anemia, complementation group I isoform 2 [H... 33 0.16
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa... 32 0.28
gi|119943086 Tax1 (human T-cell leukemia virus type I) binding p... 31 0.62
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr... 31 0.62
gi|139948432 adlican [Homo sapiens] 31 0.62
gi|54792740 transmembrane and coiled-coil domain family 2 [Homo ... 30 1.4
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens] 30 1.4
gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens] 29 1.8
gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens] 28 3.1
gi|4504935 keratin 85 [Homo sapiens] 28 3.1
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 28 4.0
gi|42789729 lymphoid-restricted membrane protein [Homo sapiens] 28 4.0
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 28 4.0
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 28 4.0
gi|108936950 coiled-coil domain containing 25 [Homo sapiens] 28 4.0
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 28 5.2
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 28 5.2
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens] 28 5.2
gi|109134347 NY-REN-58 antigen [Homo sapiens] 27 6.8
gi|109134355 NY-REN-58 antigen [Homo sapiens] 27 6.8
gi|221316609 sperm-associated cation channel 1 [Homo sapiens] 27 8.9
gi|223278347 C-type lectin domain family 4, member M isoform 9 [... 27 8.9
gi|223278344 C-type lectin domain family 4, member M isoform 10 ... 27 8.9
gi|223278337 C-type lectin domain family 4, member M isoform 12 ... 27 8.9
gi|157502225 Janus kinase and microtubule interacting protein 3 ... 27 8.9
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens] 27 8.9
gi|20143933 relaxin 2 isoform 1 preproprotein [Homo sapiens] 27 8.9
gi|223278350 C-type lectin domain family 4, member M isoform 8 [... 27 8.9
>gi|21536428 tryptophan rich basic protein isoform 1 [Homo sapiens]
Length = 174
Score = 346 bits (888), Expect = 5e-96
Identities = 174/174 (100%), Positives = 174/174 (100%)
Query: 1 MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 60
MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL
Sbjct: 1 MSSAAADHWAWLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAEIQDMKQEL 60
Query: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLI 120
STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLI
Sbjct: 61 STVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLI 120
Query: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS
Sbjct: 121 WKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174
>gi|226246630 tryptophan rich basic protein isoform 2 [Homo sapiens]
Length = 140
Score = 278 bits (710), Expect = 2e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 35 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 94
MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART
Sbjct: 1 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
Query: 95 AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 154
AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG
Sbjct: 61 AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120
Query: 155 ITCWILVCNKVVAIVLHPFS 174
ITCWILVCNKVVAIVLHPFS
Sbjct: 121 ITCWILVCNKVVAIVLHPFS 140
>gi|82830440 Fanconi anemia, complementation group I isoform 2 [Homo
sapiens]
Length = 1268
Score = 32.7 bits (73), Expect = 0.16
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 64 NMMDEFARYARLERKINKMTDKLKTHVKARTAQ-LAKIKWVISVAFYVLQAALMISLIWK 122
+++ F Y +L +N+ K KT + +T+ L +K+V S L AL L+W+
Sbjct: 770 DILSLFMCYKKLSDILNEKAGKAKTKMANKTSDSLLSMKFVSS-----LLTALFRVLLWR 824
Query: 123 YYSVPVAVVPS 133
Y S+P +V S
Sbjct: 825 YTSIPTSVEES 835
>gi|24797099 Ras protein-specific guanine nucleotide-releasing
factor 1 isoform 1 [Homo sapiens]
Length = 1273
Score = 32.0 bits (71), Expect = 0.28
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 71 RYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAV 130
RYA +ER + ++TD + L + V + A VL + I Y P++
Sbjct: 649 RYASVERLLERLTDLRFLSIDFLNTFLHSYR-VFTTAIVVLDKLITI------YKKPISA 701
Query: 131 VPSKWITPLDRLVA 144
+P++W+ L+ L A
Sbjct: 702 IPARWLRSLELLFA 715
>gi|119943086 Tax1 (human T-cell leukemia virus type I) binding
protein 1 isoform b [Homo sapiens]
Length = 747
Score = 30.8 bits (68), Expect = 0.62
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 23 VLRILLPSFSSFMSRVLQKDAEQ----ESQMRAEIQDMKQELSTV--NMMDEFARYARLE 76
V + L + + ++KD ++ E ++R E++D+K L + ++F RL+
Sbjct: 401 VKKQLADAVAELKLNAMKKDQDKTDTLEHELRREVEDLKLRLQMAADHYKEKFKECQRLQ 460
Query: 77 RKINKMTDK 85
++INK++D+
Sbjct: 461 KQINKLSDQ 469
>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
protein 1 isoform a [Homo sapiens]
Length = 789
Score = 30.8 bits (68), Expect = 0.62
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 23 VLRILLPSFSSFMSRVLQKDAEQ----ESQMRAEIQDMKQELSTV--NMMDEFARYARLE 76
V + L + + ++KD ++ E ++R E++D+K L + ++F RL+
Sbjct: 401 VKKQLADAVAELKLNAMKKDQDKTDTLEHELRREVEDLKLRLQMAADHYKEKFKECQRLQ 460
Query: 77 RKINKMTDK 85
++INK++D+
Sbjct: 461 KQINKLSDQ 469
>gi|139948432 adlican [Homo sapiens]
Length = 2828
Score = 30.8 bits (68), Expect = 0.62
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 36 SRVLQKDAEQE----SQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVK 91
SR ++++ EQE SQ+ E + Q ++NM DE L I K D K H+
Sbjct: 289 SRSIEEEQEQEEDGGSQLILEKFQLPQWSISLNMTDEHGNMVNLVCDIKKPMDVYKIHLN 348
Query: 92 ARTAQLAKIKWVISVAFYVLQAALMISLIWK---YYS-VPV 128
I +++ F +WK YYS VPV
Sbjct: 349 QTDPPDIDINATVALDFECPMTRENYEKLWKLIAYYSEVPV 389
>gi|54792740 transmembrane and coiled-coil domain family 2 [Homo
sapiens]
Length = 709
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 39 LQKDAEQESQMRAEIQDMKQELS------TVNMMDEFARYARLERKINKMTDKLKTHVKA 92
L++ E +S + ++D+K +L T + +E RY RLE ++N +T+ + +
Sbjct: 523 LREIKEGQSHLEDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQLNDLTELHQNEMTN 582
Query: 93 RTAQLAKIKWVISVAFY 109
+LA ++ ++ Y
Sbjct: 583 LKQELASMEEKVAYQSY 599
>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
Length = 1498
Score = 29.6 bits (65), Expect = 1.4
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 38 VLQKDAEQESQMRAEIQ----DMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKAR 93
VLQ+ E++ QM+ +Q +++E VN + E A++E N + H KA
Sbjct: 1159 VLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHN------RRHFKAA 1212
Query: 94 TAQLAKIKWVISVAFYVLQ 112
+ +L+++K + +++Q
Sbjct: 1213 SLELSEVKKELQAKEHLVQ 1231
>gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]
Length = 248
Score = 29.3 bits (64), Expect = 1.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 35 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFAR--YARLERKINKMTDKLK 87
+S +K +++E + EI+ + +L EFA A+LE+ I+ + DKLK
Sbjct: 171 LSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLK 225
>gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens]
Length = 248
Score = 28.5 bits (62), Expect = 3.1
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 40 QKDAEQESQMRAEIQDMKQELSTVNMMDEFAR--YARLERKINKMTDKLK 87
+K +++E + EI+ + +L EFA A+LE+ I+ + DKLK
Sbjct: 176 EKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLK 225
>gi|4504935 keratin 85 [Homo sapiens]
Length = 507
Score = 28.5 bits (62), Expect = 3.1
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 43 AEQESQMRAEIQDMKQELSTVNMMDEFARYARLE-RKINKMTDKLKTHVKARTAQLAKIK 101
AE ES R++ ++MK +TV E R + E ++N+M +L ++ Q AK++
Sbjct: 308 AEAESWYRSKCEEMK---ATVIRHGETLRRTKEEINELNRMIQRLTAEIENAKCQRAKLE 364
Query: 102 WVISVAFYVLQAAL 115
++ A +AAL
Sbjct: 365 AAVAEAEQQGEAAL 378
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 28.1 bits (61), Expect = 4.0
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 39 LQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKM-TDKLKTHVKARTAQL 97
LQK E+ ++AE+++ K L D YAR++ + K K K K + Q
Sbjct: 85 LQKCQEELGSLKAELEEKKSSLKL--YQDTHQEYARVKEECLKSDAQKKKLEAKVKKLQE 142
Query: 98 AKIK 101
A +K
Sbjct: 143 AAVK 146
>gi|42789729 lymphoid-restricted membrane protein [Homo sapiens]
Length = 499
Score = 28.1 bits (61), Expect = 4.0
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 29 PSFSSFMSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTD---- 84
PS F+S DAE+E + E++ + E R L K N +
Sbjct: 361 PSLPRFISTYSWADAEEE---KCELKTKDDSEPSGEETVERTRKPSLSEKKNNPSKWDVS 417
Query: 85 -------KLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSK 134
T++K+ + K W +S+AF VL AALM L + + V P++
Sbjct: 418 SVYDTIASWATNLKSSIRKANKALW-LSIAFIVLFAALMSFLTGQLFQKSVDAAPTQ 473
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 28.1 bits (61), Expect = 4.0
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 35 MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 94
M +LQ E+E R E + +K+ELS + + + A L+RK D LK +
Sbjct: 1199 MKHLLQLKEEEEETNRQETEKLKEELSASSARTQNLK-ADLQRKEEDYAD-LKEKLTDAK 1256
Query: 95 AQLAKIKWVISV 106
Q+ +++ +SV
Sbjct: 1257 KQIKQVQKEVSV 1268
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 28.1 bits (61), Expect = 4.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 43 AEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAK 99
A +SQM I+D++ ELS + E LE+ ++LK K+ +++L K
Sbjct: 1520 ASMKSQMELRIKDLESELSKIKTSQEDFNKTELEKYKQLYLEELKVR-KSLSSKLTK 1575
>gi|108936950 coiled-coil domain containing 25 [Homo sapiens]
Length = 208
Score = 28.1 bits (61), Expect = 4.0
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 41 KDAEQESQMRAEIQDM----KQELSTVNMMDEFARYARLERKINKMTDK 85
+D E+ ++ +A+IQ+M K+E+ MDE Y+ L + N +++
Sbjct: 151 RDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 27.7 bits (60), Expect = 5.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 36 SRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKA 92
++V E Q+RAE + Q+L + A A LE+K +M ++LK ++A
Sbjct: 675 AQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQKNRQMLEQLKEEIEA 731
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 27.7 bits (60), Expect = 5.2
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 24 LRILLPSFSSFMSRVLQKDAEQESQMRAEIQDM-----------KQELSTVNMMDEFARY 72
L LP + + +L+++ E ++ + +++ K S V++MDE R
Sbjct: 2175 LNQFLPELPADLEAILERNENLEGELESLKENLPFTMNEGPFEEKLNFSQVHIMDEHWRG 2234
Query: 73 ARLERKINKMTDKLKTHVKARTAQLAKI 100
L K+ D+LK ++ ++ A++
Sbjct: 2235 EALREKLRHREDRLKAQLRHCMSKQAEV 2262
>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
Length = 446
Score = 27.7 bits (60), Expect = 5.2
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 44 EQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHV 90
+Q S M+AE+Q ++EL T+ +++ +LE K+ + D +T +
Sbjct: 168 KQNSDMQAELQKKQEELETLQSINK-----KLELKVKEQKDYWETEL 209
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 27.3 bits (59), Expect = 6.8
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 22 NVLRILLPSFSSFMSRVLQKDAEQES-QMRAEIQDMKQELSTVNMMDEFA--RYARLERK 78
N RI + + + V +AE++S +RAE +++EL + + + F + + ER+
Sbjct: 247 NAQRIQVRQLAEMQATVRSLEAEKQSANLRAE--RLEKELQSSSEQNTFLINKLHKAERE 304
Query: 79 INKMTDKLKTHVKARTAQLAKIK 101
IN ++ K+K + ++ IK
Sbjct: 305 INTLSSKVKELKHSNKLEITDIK 327
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 27.3 bits (59), Expect = 6.8
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 22 NVLRILLPSFSSFMSRVLQKDAEQES-QMRAEIQDMKQELSTVNMMDEFA--RYARLERK 78
N RI + + + V +AE++S +RAE +++EL + + + F + + ER+
Sbjct: 247 NAQRIQVRQLAEMQATVRSLEAEKQSANLRAE--RLEKELQSSSEQNTFLINKLHKAERE 304
Query: 79 INKMTDKLKTHVKARTAQLAKIK 101
IN ++ K+K + ++ IK
Sbjct: 305 INTLSSKVKELKHSNKLEITDIK 327
>gi|221316609 sperm-associated cation channel 1 [Homo sapiens]
Length = 780
Score = 26.9 bits (58), Expect = 8.9
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 11 WLLVLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQESQMRAE---IQDMKQELSTVNMMD 67
++++ F+F V+ +L+ SF + + + L+K A+QE R + ++D EL +
Sbjct: 654 YIIIQYFIFLNLVITVLVDSFQTALFKGLEK-AKQERAARIQEKLLEDSLTELRAAEPKE 712
Query: 68 EFARYARLERKINK----MTDK 85
+ L+R I K MT+K
Sbjct: 713 VASEGTMLKRLIEKKFGTMTEK 734
>gi|223278347 C-type lectin domain family 4, member M isoform 9
[Homo sapiens]
Length = 353
Score = 26.9 bits (58), Expect = 8.9
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 2 SSAAADHWAWLL-VLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQES--QMRAEIQDMKQ 58
S+ H A +L +LSF+ VL +L S S + Q+ +EQ++ Q +++
Sbjct: 42 STGCLGHGALVLQLLSFMLLAGVLVAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVG 101
Query: 59 ELSTVNMMDE-FARYARLERKINKMTDKLK--------THVKARTAQL 97
ELS + + E + +L+ + ++ +K K T +KA +L
Sbjct: 102 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGEL 149
>gi|223278344 C-type lectin domain family 4, member M isoform 10
[Homo sapiens]
Length = 232
Score = 26.9 bits (58), Expect = 8.9
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 2 SSAAADHWAWLL-VLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQES--QMRAEIQDMKQ 58
S+ H A +L +LSF+ VL +L S S + Q+ +EQ++ Q +++
Sbjct: 42 STGCLGHGALVLQLLSFMLLAGVLVAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVG 101
Query: 59 ELSTVNMMDE-FARYARLERKINKMTDKLK--------THVKARTAQL 97
ELS + + E + +L+ + ++ +K K T +KA +L
Sbjct: 102 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGEL 149
>gi|223278337 C-type lectin domain family 4, member M isoform 12
[Homo sapiens]
Length = 375
Score = 26.9 bits (58), Expect = 8.9
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 2 SSAAADHWAWLL-VLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQES--QMRAEIQDMKQ 58
S+ H A +L +LSF+ VL +L S S + Q+ +EQ++ Q +++
Sbjct: 41 STGCLGHGALVLQLLSFMLLAGVLVAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVG 100
Query: 59 ELSTVNMMDE-FARYARLERKINKMTDKLK--------THVKARTAQL 97
ELS + + E + +L+ + ++ +K K T +KA +L
Sbjct: 101 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGEL 148
>gi|157502225 Janus kinase and microtubule interacting protein 3
[Homo sapiens]
Length = 844
Score = 26.9 bits (58), Expect = 8.9
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 36 SRVLQKDAEQESQMRAEIQDMKQELSTVN--MMDEFARYARLERKINKMTDKLKTHVKAR 93
SR AE + ++A +D++ +L+ + + E ++ +++ER+ N+ +++ H + +
Sbjct: 8 SRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHK 67
Query: 94 TAQL 97
TA L
Sbjct: 68 TAVL 71
>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
Length = 326
Score = 26.9 bits (58), Expect = 8.9
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 43 AEQESQMRAEIQDMKQELST----VNMMDEFARYARLERKINKMTDKLKTHV 90
A ++ R E+ D + + T +++ EF RL+RK+NK +K K V
Sbjct: 107 ANGSNEDRGEVADEDKRIITDDEIISLSIEFFDQNRLDRKVNKDKEKSKEEV 158
>gi|20143933 relaxin 2 isoform 1 preproprotein [Homo sapiens]
Length = 185
Score = 26.9 bits (58), Expect = 8.9
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 2 SSAAADHWAWLLVLSFVFGCNVLR--ILLPSFSSFMSRVL-QKDAEQESQMRAEIQD--M 56
S A AD W ++ + G ++R I + S++ R L Q+DA Q + AEI +
Sbjct: 20 SRAVADSWMEEVIK--LCGRELVRAQIAICGMSTWSKRSLSQEDAPQTPRPVAEIVPSFI 77
Query: 57 KQELSTVNMMDEFARYARLERKI 79
++ T+NMM EF E K+
Sbjct: 78 NKDTETINMMSEFVANLPQELKL 100
>gi|223278350 C-type lectin domain family 4, member M isoform 8
[Homo sapiens]
Length = 376
Score = 26.9 bits (58), Expect = 8.9
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 2 SSAAADHWAWLL-VLSFVFGCNVLRILLPSFSSFMSRVLQKDAEQES--QMRAEIQDMKQ 58
S+ H A +L +LSF+ VL +L S S + Q+ +EQ++ Q +++
Sbjct: 42 STGCLGHGALVLQLLSFMLLAGVLVAILVQVSKVPSSLSQEQSEQDAIYQNLTQLKAAVG 101
Query: 59 ELSTVNMMDE-FARYARLERKINKMTDKLK--------THVKARTAQL 97
ELS + + E + +L+ + ++ +K K T +KA +L
Sbjct: 102 ELSEKSKLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGEL 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,454,161
Number of Sequences: 37866
Number of extensions: 183096
Number of successful extensions: 1017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 34
length of query: 174
length of database: 18,247,518
effective HSP length: 95
effective length of query: 79
effective length of database: 14,650,248
effective search space: 1157369592
effective search space used: 1157369592
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.