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Search of human proteins with 214831730
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|214831730 fatty acid desaturase 1 [Homo sapiens]
(501 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|214831730 fatty acid desaturase 1 [Homo sapiens] 1062 0.0
gi|4758334 fatty acid desaturase 2 [Homo sapiens] 593 e-170
gi|13375616 fatty acid desaturase 3 [Homo sapiens] 497 e-140
gi|83921614 cytochrome b5 outer mitochondrial membrane precursor... 63 5e-10
gi|4503183 cytochrome b-5 isoform 2 [Homo sapiens] 57 3e-08
gi|41281768 cytochrome b-5 isoform 1 [Homo sapiens] 57 3e-08
gi|205360949 fatty acid 2-hydroxylase [Homo sapiens] 45 1e-04
gi|116812626 fatty acid desaturase domain family, member 6 [Homo... 45 2e-04
gi|74099704 sulfite oxidase [Homo sapiens] 42 0.002
gi|74099702 sulfite oxidase [Homo sapiens] 42 0.002
gi|74099694 sulfite oxidase [Homo sapiens] 42 0.002
gi|84875541 cytochrome b5 reductase 4 [Homo sapiens] 39 0.008
gi|126032348 hect domain and RLD 2 [Homo sapiens] 39 0.014
gi|8659574 transcription factor E3 [Homo sapiens] 34 0.27
gi|239755909 PREDICTED: hypothetical protein [Homo sapiens] 34 0.27
gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo ... 34 0.27
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 33 0.46
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|77681565 NG5 protein [Homo sapiens] 33 0.61
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 32 1.0
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 32 1.0
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 32 1.0
gi|40255060 cytochrome b5 domain containing 1 [Homo sapiens] 32 1.0
gi|134031945 SCO-spondin [Homo sapiens] 32 1.8
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|239749263 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 31 2.3
gi|239509052 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 31 2.3
>gi|214831730 fatty acid desaturase 1 [Homo sapiens]
Length = 501
Score = 1062 bits (2746), Expect = 0.0
Identities = 501/501 (100%), Positives = 501/501 (100%)
Query: 1 MGTRAARPAGLPCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPAMAP 60
MGTRAARPAGLPCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPAMAP
Sbjct: 1 MGTRAARPAGLPCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPAMAP 60
Query: 61 DPVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYA 120
DPVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYA
Sbjct: 61 DPVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYA 120
Query: 121 GQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMG 180
GQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMG
Sbjct: 121 GQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMG 180
Query: 181 LMKANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGH 240
LMKANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGH
Sbjct: 181 LMKANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGH 240
Query: 241 LSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGK 300
LSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGK
Sbjct: 241 LSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGK 300
Query: 301 ILSVELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFY 360
ILSVELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFY
Sbjct: 301 ILSVELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFY 360
Query: 361 VRFFLTYVPLLGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQAT 420
VRFFLTYVPLLGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQAT
Sbjct: 361 VRFFLTYVPLLGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQAT 420
Query: 421 CNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAF 480
CNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAF
Sbjct: 421 CNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAF 480
Query: 481 ADIIHSLKESGQLWLDAYLHQ 501
ADIIHSLKESGQLWLDAYLHQ
Sbjct: 481 ADIIHSLKESGQLWLDAYLHQ 501
>gi|4758334 fatty acid desaturase 2 [Homo sapiens]
Length = 444
Score = 593 bits (1530), Expect = e-170
Identities = 273/438 (62%), Positives = 335/438 (76%), Gaps = 4/438 (0%)
Query: 64 AAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQD 123
AAE PT F+W+E+ + + +RWLVIDRKVYNI++++ +HPGG RVI HYAG+D
Sbjct: 11 AAEREVSVPT---FSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVIGHYAGED 67
Query: 124 ATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMGLMK 183
ATD F AFH + V K++ LLIGEL+PE+PS + KN ++T++FR LR T E M L K
Sbjct: 68 ATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTAEDMNLFK 127
Query: 184 ANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGHLSV 243
NHVFFLL L HI+ L+ AW T++ FG ++P L+ A +L+ QAQAGWLQHD+GHLSV
Sbjct: 128 TNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQHDYGHLSV 187
Query: 244 FSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINMHPFFFALGKILS 303
+ KWNHL+H FVIGHLKGA A+WWNH HFQHHAKPN F KDPD+NM F LG+
Sbjct: 188 YRKPKWNHLVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDVNML-HVFVLGEWQP 246
Query: 304 VELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMITFYVRF 363
+E GK+K KY+PYNHQH+YFFLIGPP L+P+YFQ+ I +I K WVDLAW +++Y+RF
Sbjct: 247 IEYGKKKLKYLPYNHQHEYFFLIGPPLLIPMYFQYQIIMTMIVHKNWVDLAWAVSYYIRF 306
Query: 364 FLTYVPLLGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMDWVSTQLQATCNV 423
F+TY+P G+ L +RFLES+WFVWVTQMNHI M ID + DW S+QL ATCNV
Sbjct: 307 FITYIPFYGILGALLFLNFIRFLESHWFVWVTQMNHIVMEIDQEAYRDWFSSQLTATCNV 366
Query: 424 HKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEYQSKPLLSAFADI 483
+S FNDWFSGHLNFQIEHHLFPTMPRHN HK+APLV+SLCAKHGIEYQ KPLL A DI
Sbjct: 367 EQSFFNDWFSGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQEKPLLRALLDI 426
Query: 484 IHSLKESGQLWLDAYLHQ 501
I SLK+SG+LWLDAYLH+
Sbjct: 427 IRSLKKSGKLWLDAYLHK 444
>gi|13375616 fatty acid desaturase 3 [Homo sapiens]
Length = 445
Score = 497 bits (1279), Expect = e-140
Identities = 236/450 (52%), Positives = 306/450 (68%), Gaps = 7/450 (1%)
Query: 52 GVARPAMAPDPVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPG 111
GV P P A+ A PT F W+++ ++WLVI+R+VY+IS + +RHPG
Sbjct: 3 GVGEPGPREGP--AQPGAPLPT---FCWEQIRAHDQPGDKWLVIERRVYDISRWAQRHPG 57
Query: 112 GSRVISHYAGQDATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRE 171
GSR+I H+ +DATD F AFH + V+K++ LLIGEL+PE+PS + N +L ++FR
Sbjct: 58 GSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRA 117
Query: 172 LRATVERMGLMKANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQA 231
L E M L A+ FF L HIL ++ AWL +++ G ++P L A +L+ QAQ+
Sbjct: 118 LHQAAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQS 177
Query: 232 GWLQHDFGHLSVFSTSKWNHLLHHFVIGHLKGAPASWWNHMHFQHHAKPNCFRKDPDINM 291
LQHD GH S+F S WNH+ FV+G LKG A WWN HFQHHAKPN F KDPD+ +
Sbjct: 178 WCLQHDLGHASIFKKSWWNHVAQKFVMGQLKGFSAHWWNFRHFQHHAKPNIFHKDPDVTV 237
Query: 292 HPFFFALGKILSVELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWV 351
P F LG+ SVE GK+K++Y+PYN QH YFFLIGPP L + F+ +++ +W
Sbjct: 238 APVFL-LGES-SVEYGKKKRRYLPYNQQHLYFFLIGPPLLTLVNFEVENLAYMLVCMQWA 295
Query: 352 DLAWMITFYVRFFLTYVPLLGLKAFLGLFFIVRFLESNWFVWVTQMNHIPMHIDHDRNMD 411
DL W +FY RFFL+Y+P G+ L F VR LES+WFVW+TQMNHIP I H+++ D
Sbjct: 296 DLLWAASFYARFFLSYLPFYGVPGVLLFFVAVRVLESHWFVWITQMNHIPKEIGHEKHRD 355
Query: 412 WVSTQLQATCNVHKSAFNDWFSGHLNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIEY 471
WVS+QL ATCNV S F +WFSGHLNFQIEHHLFP MPRHNY +VAPLV+SLCAKHG+ Y
Sbjct: 356 WVSSQLAATCNVEPSLFTNWFSGHLNFQIEHHLFPRMPRHNYSRVAPLVKSLCAKHGLSY 415
Query: 472 QSKPLLSAFADIIHSLKESGQLWLDAYLHQ 501
+ KP L+A DI+ SLK+SG +WLDAYLHQ
Sbjct: 416 EVKPFLTALVDIVRSLKKSGDIWLDAYLHQ 445
>gi|83921614 cytochrome b5 outer mitochondrial membrane precursor
[Homo sapiens]
Length = 150
Score = 63.2 bits (152), Expect = 5e-10
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 76 YFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFV----AF 131
Y+ +EVA+R+ +E WLVI +VY+++ F HPGG V+ AG DA++ F +
Sbjct: 26 YYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSS 85
Query: 132 HINKGLVKKYMNSLLIGELSPEQPSFEPTKN 162
+ L + Y+ + +L PE S +P+KN
Sbjct: 86 DAREMLKQYYIGDIHPSDLKPESGSKDPSKN 116
>gi|4503183 cytochrome b-5 isoform 2 [Homo sapiens]
Length = 98
Score = 57.4 bits (137), Expect = 3e-08
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 75 RYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFHIN 134
+Y+T +E+ + + + WL++ KVY++++F HPGG V+ AG DAT+ F +
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 135 KGLVKKYMNSLLIGELSPEQPSFEPTKNK 163
++ + +IGEL P+ P NK
Sbjct: 70 TD-AREMSKTFIIGELHPDD---RPKLNK 94
>gi|41281768 cytochrome b-5 isoform 1 [Homo sapiens]
Length = 134
Score = 57.4 bits (137), Expect = 3e-08
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 75 RYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFHIN 134
+Y+T +E+ + + + WL++ KVY++++F HPGG V+ AG DAT+ F +
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 135 KGLVKKYMNSLLIGELSPEQPSFEPTKNK 163
++ + +IGEL P+ P NK
Sbjct: 70 TD-AREMSKTFIIGELHPDD---RPKLNK 94
>gi|205360949 fatty acid 2-hydroxylase [Homo sapiens]
Length = 372
Score = 45.4 bits (106), Expect = 1e-04
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 58 MAPDPVAAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVIS 117
MAP P P F+ EV +R W+ ++Y++S F R HPGG +++
Sbjct: 1 MAPAP---------PPAASFSPSEVQRRLAAGACWVRRGARLYDLSSFVRHHPGGEQLLR 51
Query: 118 HYAGQD-ATDPFVAFHINKGLVKKYMNSLLIGELSPEQ 154
AGQD + D H + ++++ +GEL EQ
Sbjct: 52 ARAGQDISADLDGPPHRHSANARRWLEQYYVGELRGEQ 89
>gi|116812626 fatty acid desaturase domain family, member 6 [Homo
sapiens]
Length = 350
Score = 45.1 bits (105), Expect = 2e-04
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 19/199 (9%)
Query: 304 VELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQWYIFYFVIQRKKWVDLAWMIT----F 359
V LG +P +++ Y FL P LLP+ ++R + V+L +
Sbjct: 144 VGLGDSSTWRLPCLNRYVYMFLA--PFLLPIATP----LVAVERLRKVELGTALRTLALI 197
Query: 360 YVRFFLTYVPLLGLKAF------LGLFFIVRFLESNWFVWVTQMNHIPMHI-DHDRNMDW 412
+ + Y LL + F LG F+ R L ++ ++ V HI + + D
Sbjct: 198 SLGLYSHYWLLLNVSGFKNPSSALGCMFLTRSLLAHPYLHVNIFQHIGLPMFSRDNKPRR 257
Query: 413 VSTQLQATCNVHKSAFNDWFSGH--LNFQIEHHLFPTMPRHNYHKVAPLVQSLCAKHGIE 470
+ N+ + DW GH ++ +EHHLFP + + KV P+V + +
Sbjct: 258 IHMMSLGVLNLARLPVLDWAFGHSIISCHVEHHLFPRLSDNMCLKVKPVVSQFLREKQLP 317
Query: 471 YQSKPLLSAFADIIHSLKE 489
Y L+ F + +E
Sbjct: 318 YNEDSYLARFQLFLRRYEE 336
>gi|74099704 sulfite oxidase [Homo sapiens]
Length = 545
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 68 AAQGPTPRYFTWDEVAQRSGCEER-WLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATD 126
AAQ T Y T +EV+ + E W+ + +V++++EF HPGG + AG +
Sbjct: 77 AAQESTHIY-TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAG-GPLE 134
Query: 127 PFVAFHI--NKGLVKKYMNSLLIGELSPE 153
PF A + N+ V++ + IGEL+PE
Sbjct: 135 PFWALYAVHNQSHVRELLAQYKIGELNPE 163
>gi|74099702 sulfite oxidase [Homo sapiens]
Length = 545
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 68 AAQGPTPRYFTWDEVAQRSGCEER-WLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATD 126
AAQ T Y T +EV+ + E W+ + +V++++EF HPGG + AG +
Sbjct: 77 AAQESTHIY-TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAG-GPLE 134
Query: 127 PFVAFHI--NKGLVKKYMNSLLIGELSPE 153
PF A + N+ V++ + IGEL+PE
Sbjct: 135 PFWALYAVHNQSHVRELLAQYKIGELNPE 163
>gi|74099694 sulfite oxidase [Homo sapiens]
Length = 545
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 68 AAQGPTPRYFTWDEVAQRSGCEER-WLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATD 126
AAQ T Y T +EV+ + E W+ + +V++++EF HPGG + AG +
Sbjct: 77 AAQESTHIY-TKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAG-GPLE 134
Query: 127 PFVAFHI--NKGLVKKYMNSLLIGELSPE 153
PF A + N+ V++ + IGEL+PE
Sbjct: 135 PFWALYAVHNQSHVRELLAQYKIGELNPE 163
>gi|84875541 cytochrome b5 reductase 4 [Homo sapiens]
Length = 521
Score = 39.3 bits (90), Expect = 0.008
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 78 TWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFH 132
T +E+ + + ++ W+ I VYN+S + HPGG + AG D T+ F H
Sbjct: 58 TEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVH 112
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 38.5 bits (88), Expect = 0.014
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 92 WLVIDRKVYNISEFTRRHPGGSRVISHYAGQDATDPFVAFH--INKGLVKKYMNSLLIGE 149
W VID KVY+I +F + G+ +++ +AG+ DP VA + ++ M++ +G+
Sbjct: 1225 WTVIDGKVYDIKDFQTQSLTGNSILAQFAGE---DPVVALEAALQFEDTRESMHAFCVGQ 1281
Query: 150 -LSPEQPSFEPTKNKELTDEFRELRATVERMGLMKANHVFFLLYL--LHILLLDGAAWLT 206
L P+Q E +L L T +GL+ H +L L + ++ A WL
Sbjct: 1282 YLEPDQ---EIVTIPDLGSLSSPLIDTERNLGLLLGLHASYLAMSTPLSPVEIECAKWLQ 1338
Query: 207 LWVF 210
+F
Sbjct: 1339 SSIF 1342
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 34.3 bits (77), Expect = 0.27
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 16 ENPARRRLALGARQQIHSW-----SPRTPSTRLTAPAGPARGVARPAMAPDPVAAETAAQ 70
ENP R L RQQ+ + P+ S LT P GPA PA P AA T
Sbjct: 184 ENPTRYHLQQARRQQVKQYLSTTLGPKLASQALTPPPGPASAQPLPA----PEAAHTT-- 237
Query: 71 GPT 73
GPT
Sbjct: 238 GPT 240
>gi|239755909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 17 NPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARP-AMAPDPVAAETAAQGPTPR 75
+PA RR + R + W + P R A + R + RP A P P + + +A PR
Sbjct: 76 SPAERRRKMWRRLRRKCWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGPR 135
Query: 76 YFTWDEVAQRSG 87
+ D + RSG
Sbjct: 136 PVSRDTSSARSG 147
>gi|239750423 PREDICTED: hypothetical protein XP_002347390 [Homo
sapiens]
Length = 212
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 17 NPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARP-AMAPDPVAAETAAQGPTPR 75
+PA RR + R + W + P R A + R + RP A P P + + +A PR
Sbjct: 76 SPAERRRKMWRRLRRKCWKEQGPGGRGGASSSELRALGRPGAAGPGPGSGDASALAGGPR 135
Query: 76 YFTWDEVAQRSG 87
+ D + RSG
Sbjct: 136 PVSRDTSSARSG 147
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 33.5 bits (75), Expect = 0.46
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 35 SPRTPSTRLTAPAGPAR-GVARPAMAPDPVAAETAAQGPTPRYFTWDEVAQRSGCEERW 92
SP + T+P GP+ +RPA+A PVA++ +GP Q +GC +W
Sbjct: 368 SPPGAEAKPTSPTGPSVCASSRPALAKRPVASKALCEGPPE--------PQAAGCRPQW 418
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 0.61
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 5 AARPAGLPCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPAMA-PDPV 63
A RPA P G + P AL W R ST P P G R A+A P P+
Sbjct: 93 ARRPAPAPRGPKQPGCCA-ALAGGDTNGEWILRG-STWGLCPPSPGCGAGRRALATPGPL 150
Query: 64 AAETAAQGPTPRY 76
+ AAQ P PR+
Sbjct: 151 ESPAAAQDPLPRH 163
>gi|77681565 NG5 protein [Homo sapiens]
Length = 306
Score = 33.1 bits (74), Expect = 0.61
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 22 RLALGARQQIHSWSPRTPSTRLT-------APAGPARGVARPA------MAPDPVAAETA 68
RL G + + R PS+ T AP GPA G P M PDP ET
Sbjct: 58 RLGAGGLASSAATAQRGPSSSATLPRPPHHAPPGPAAGAPPPGCATLPRMPPDPYLQETR 117
Query: 69 AQGPTP 74
+GP P
Sbjct: 118 FEGPLP 123
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 5 AARPAGLPCGAEN-PARRRLALGARQQIHSWSPRTPSTRLTAPAG---PARGVARPAMAP 60
A PA +P + P LAL AR+ S SPR STR P G P+ RP P
Sbjct: 76 ACSPARVPRRPVSCPGPEPLALAARR---SQSPRVASTRSLRPPGSPVPSPSSPRPVPVP 132
Query: 61 DPVAAETAAQGPTPRYFTWDEVAQR 85
P A + P W + +R
Sbjct: 133 SPSCASGWSGPPVGGARAWARLCRR 157
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 32.3 bits (72), Expect = 1.0
Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 26 GARQQIHSWSPRTPSTRLTAPAGPARGVARPAMAPDPVAAETAAQGPTP 74
G Q H S R P TR PA PAR P AP P A AQ P P
Sbjct: 14 GGGQGRHRHSSRAPGTR--TPATPARSPRPPLCAPRP--APGRAQSPVP 58
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 5 AARPAGLPCGAEN-PARRRLALGARQQIHSWSPRTPSTRLTAPAG---PARGVARPAMAP 60
A PA +P + P LAL AR+ S SPR STR P G P+ RP P
Sbjct: 76 ACSPARVPRRPVSCPGPEPLALAARR---SQSPRVASTRSLRPPGSPVPSPSSPRPVPVP 132
Query: 61 DPVAAETAAQGPTPRYFTWDEVAQR 85
P A + P W + +R
Sbjct: 133 SPSCASGWSGPPVGGARAWARLCRR 157
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 32.3 bits (72), Expect = 1.0
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 46 PAGPARGVARPAMAPDPVAAETAAQGPTP 74
PA P G A PAMAP P +A A P P
Sbjct: 417 PAEPEVGPAAPAMAPAPASAPAPASAPAP 445
Score = 32.0 bits (71), Expect = 1.3
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 37 RTPSTRLTAPAGPARGVARPAMAPDPVAAETAAQGPTP 74
RTP+ PA PA A PA AP P +A A PTP
Sbjct: 415 RTPAEPEVGPAAPAMAPA-PASAPAPASAPAPAPVPTP 451
>gi|40255060 cytochrome b5 domain containing 1 [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 1.0
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 75 RYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGG--SRVISHYAGQDATDPF 128
RYFT EVAQ + E+ W+ +VY+++ + + G + I AGQD + F
Sbjct: 18 RYFTPAEVAQHNRPEDLWVSYLGRVYDLTSLAQEYKGNLLLKPIVEVAGQDISHWF 73
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 31.6 bits (70), Expect = 1.8
Identities = 43/181 (23%), Positives = 62/181 (34%), Gaps = 28/181 (15%)
Query: 3 TRAARPAGL-----PCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPA 57
TRA R A PC + R+ + SW P P +R P +R + P
Sbjct: 4277 TRACRAAAPHHRSPPCLGPDTQTRQQPCPGLLEACSWGPWGPCSRSCGPGLASRSGSCPC 4336
Query: 58 M--APDPVAAET--------AAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYN--ISEF 105
+ DP T GP P W + + C R LV R + S
Sbjct: 4337 LMAKADPTCNSTFLHLDTQGCYSGPCPEECVWSSWSSWTRCSCRVLVQQRYRHQGPASRG 4396
Query: 106 TRRHPGGSRVISHY-------AGQDATDPFVAFHI----NKGLVKKYMNSLLIGELSPEQ 154
R +R+ H+ +D+ P FH GL +++ L +L P Q
Sbjct: 4397 ARAGAPCTRLDGHFRPCLISNCSEDSCTPPFEFHACGSPCAGLCATHLSHQLCQDLPPCQ 4456
Query: 155 P 155
P
Sbjct: 4457 P 4457
Score = 29.3 bits (64), Expect = 8.7
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 33 SWSPRTPSTRLTAPAGPAR------GVARPAMAPDPVAAETAAQGPTP 74
+WSP TP ++ +A GPAR P+ P VA PTP
Sbjct: 3185 TWSPWTPWSQCSASCGPARCHRHRFCARSPSAVPSTVAPLPLPATPTP 3232
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 PAGPARGVARPAMAPDPVAAETAAQGP-TPRYFTWDEVAQRSGC 88
PA P+ G+ARP+ A P++ AA G P WD RS C
Sbjct: 71 PALPSAGLARPS-ASQPLSVRAAASGERRPHVPPWDGARSRSWC 113
>gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 PAGPARGVARPAMAPDPVAAETAAQGP-TPRYFTWDEVAQRSGC 88
PA P+ G+ARP+ A P++ AA G P WD RS C
Sbjct: 71 PALPSAGLARPS-ASQPLSVRAAASGERRPHVPPWDGARSRSWC 113
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 PAGPARGVARPAMAPDPVAAETAAQGP-TPRYFTWDEVAQRSGC 88
PA P+ G+ARP+ A P++ AA G P WD RS C
Sbjct: 71 PALPSAGLARPS-ASQPLSVRAAASGERRPHVPPWDGARSRSWC 113
>gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 2.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 PAGPARGVARPAMAPDPVAAETAAQGP-TPRYFTWDEVAQRSGC 88
PA P+ G+ARP+ A P++ AA G P WD RS C
Sbjct: 71 PALPSAGLARPS-ASQPLSVRAAASGERRPHVPPWDGARSRSWC 113
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 31.2 bits (69), Expect = 2.3
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 1 MGTRAARPAGLPCGAENPARRRLALGA-RQQIHSWSPRTPSTRLTAPAGPA-RGVARPAM 58
+G +A CGA PA + G R + +W RT + P+ PA R RP
Sbjct: 39 VGAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEA 98
Query: 59 APDPVAAETAAQG 71
+ P+ E A G
Sbjct: 99 SSPPLPLEKARGG 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,311,323
Number of Sequences: 37866
Number of extensions: 1013388
Number of successful extensions: 4379
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 4318
Number of HSP's gapped (non-prelim): 101
length of query: 501
length of database: 18,247,518
effective HSP length: 106
effective length of query: 395
effective length of database: 14,233,722
effective search space: 5622320190
effective search space used: 5622320190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.