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Search of human proteins with 21396480
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21396480 RNA binding protein (autoantigenic,
hnRNP-associated with lethal yellow) short isoform [Homo sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 573 e-164
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 562 e-160
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens] 244 6e-65
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens] 244 6e-65
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens] 244 6e-65
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens] 244 6e-65
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b... 201 6e-52
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b... 201 6e-52
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a... 196 2e-50
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a... 196 2e-50
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho... 186 2e-47
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ... 185 5e-47
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc... 185 5e-47
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom... 185 5e-47
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom... 184 1e-46
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 62 5e-10
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 62 5e-10
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 62 5e-10
gi|84570137 homeobox B3 [Homo sapiens] 62 8e-10
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 59 5e-09
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 57 2e-08
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 57 2e-08
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 56 4e-08
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 55 6e-08
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 55 6e-08
gi|6912752 zinc finger protein 281 [Homo sapiens] 54 1e-07
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 54 1e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 54 1e-07
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 54 1e-07
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 54 2e-07
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 573 bits (1476), Expect = e-164
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYRLFDYRGRLSP 120
QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYRLFDYRGRLSP
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYRLFDYRGRLSP 120
Query: 121 VPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQ 180
VPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQ
Sbjct: 121 VPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQ 180
Query: 181 IKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 240
IKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP
Sbjct: 181 IKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 240
Query: 241 APQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 290
APQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDADDGALQ
Sbjct: 241 APQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 290
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 562 bits (1449), Expect = e-160
Identities = 290/306 (94%), Positives = 290/306 (94%), Gaps = 16/306 (5%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
Sbjct: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY----------- 109
QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIY
Sbjct: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPKGLKRAASAIYSGYIFDYDYYR 120
Query: 110 -----RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 164
RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI
Sbjct: 121 DDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKI 180
Query: 165 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 224
KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG
Sbjct: 181 KLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSG 240
Query: 225 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 284
GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA
Sbjct: 241 GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTHSEEELEHSQDTDA 300
Query: 285 DDGALQ 290
DDGALQ
Sbjct: 301 DDGALQ 306
>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 244 bits (623), Expect = 6e-65
Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152
RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 244 bits (623), Expect = 6e-65
Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152
RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
Length = 291
Score = 244 bits (623), Expect = 6e-65
Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 61 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120
Query: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152
RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 179
Query: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 180 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 233
>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
Length = 304
Score = 244 bits (623), Expect = 6e-65
Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)
Query: 1 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60
M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 14 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
Query: 61 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109
QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR SA+Y
Sbjct: 74 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
Query: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152
RLFDY GR+ P P +P+KRPRV V RR K +K +
Sbjct: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 192
Query: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208
RSTA + S KLKS ELQ IK ELTQIK+ ID+LL RLE+I +QKA + +KK
Sbjct: 193 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 246
>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 201 bits (511), Expect = 6e-52
Identities = 117/212 (55%), Positives = 144/212 (67%), Gaps = 24/212 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYD 121
Query: 110 RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
R++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KLK
Sbjct: 122 RMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
+LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 177 GDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
[Homo sapiens]
Length = 293
Score = 201 bits (511), Expect = 6e-52
Identities = 117/212 (55%), Positives = 144/212 (67%), Gaps = 24/212 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYYD 121
Query: 110 RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
R++ Y R+ P P+ RA VP KR RV+ RR K+ F + SS KLK
Sbjct: 122 RMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSKSGQRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
+LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 177 GDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 208
>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 196 bits (498), Expect = 2e-50
Identities = 117/225 (52%), Positives = 144/225 (64%), Gaps = 37/225 (16%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
Query: 110 -------------RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARS 154
R++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 122 FDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSK 176
Query: 155 TAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 177 SGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
[Homo sapiens]
Length = 306
Score = 196 bits (498), Expect = 2e-50
Identities = 117/225 (52%), Positives = 144/225 (64%), Gaps = 37/225 (16%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP+S+NSRVFIGNLNT +VKKSDVE IFSKYG++ GCSVHKG+AFVQY NER
Sbjct: 2 ASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNER 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------------- 109
+ARAAV GE+GR++AGQ LDIN+A EPK +R K G+KR+A+ +Y
Sbjct: 62 NARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSS 121
Query: 110 -------------RLFDYRGRL-SPVPVPRA-VPVKRPRVTVPLVRRVKTNVPVKLFARS 154
R++ Y R+ P P+ RA VP KR RV+ RR K+ F
Sbjct: 122 FDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSG-----FNSK 176
Query: 155 TAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQ 199
+ SS KLK +LQAIK ELTQIK +D+LL LE+I EQ
Sbjct: 177 SGQRGSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQ 221
>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
sapiens]
Length = 293
Score = 186 bits (473), Expect = 2e-47
Identities = 128/295 (43%), Positives = 161/295 (54%), Gaps = 34/295 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYD 121
Query: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 122 GMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGG 227
+LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHV 236
Query: 228 SGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQD 281
GG ++E G P + D GD++ L+ E+E E +D
Sbjct: 237 KMESEGGAED---------SAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGED 282
>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
C-like [Homo sapiens]
Length = 293
Score = 185 bits (469), Expect = 5e-47
Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 24/211 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYG 121
Query: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAE 198
+LQAIK ELTQIK +D+LL LE+I E
Sbjct: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
Length = 293
Score = 185 bits (469), Expect = 5e-47
Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 24/211 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYG 121
Query: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAE 198
+LQAIK ELTQIK +D+LL LE+I E
Sbjct: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 185 bits (469), Expect = 5e-47
Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 24/211 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
+ARAAV GE+GR++A Q +DIN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 62 NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYG 121
Query: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAE 198
+LQAIK ELTQIK +D+LL LE+I E
Sbjct: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
sapiens]
Length = 293
Score = 184 bits (466), Expect = 1e-46
Identities = 128/302 (42%), Positives = 164/302 (54%), Gaps = 35/302 (11%)
Query: 7 ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66
ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY E+
Sbjct: 2 ASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
Query: 67 HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115
+ARAAV GE+GR++A Q IN+A EPK +R G+KR+A+ +Y FD Y
Sbjct: 62 NARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYYD 121
Query: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167
G S P P P A VP KR R++ RR K+ F + SS KLK
Sbjct: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
Query: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGG 227
+LQAIK ELTQIK +D+LL LE+I EQ K
Sbjct: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHV 236
Query: 228 SGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEE-GLLTHSEEELEHSQDT-DAD 285
GG ++E G P + D GD + L+ ++E++ E +D D+
Sbjct: 237 KMESEGGAED---------SAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDST 287
Query: 286 DG 287
+G
Sbjct: 288 NG 289
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 132 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 191
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 192 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 132 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 191
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 192 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 62.4 bits (150), Expect = 5e-10
Identities = 40/106 (37%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 132 PRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSR 191
P +P + V P+ A S+ TTS++ SS +I + L R
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSAT--SSPAPSIGPPASS-----GPTLFR 56
Query: 192 LEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
E IA+ A G GGG GG GGGGGS G G GGGGGGG S
Sbjct: 57 PEPIASAAAAAATVTSTGGGGGGGGSGGGGGSSGNGGGGGGGGGGS 102
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 61.6 bits (148), Expect = 8e-10
Identities = 26/41 (63%), Positives = 27/41 (65%)
Query: 200 KANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 240
K N G +G GGG GGGGGGG G GG GGGGGGG PP
Sbjct: 143 KNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPP 183
Score = 52.0 bits (123), Expect = 6e-07
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 197 AEQKANPDGKKKGDGGGAGGGGGGGGSGG-GGSGGGGGGGSSRPPAPQENTTSE 249
+ Q + G G GGGGGGGG GG GGSGGGGGGG +P + S+
Sbjct: 136 SRQTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASK 189
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 58.9 bits (141), Expect = 5e-09
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 195 IAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPP 240
+A+ N G G GGG+GGG G GG G GG+GGGGGGGS PP
Sbjct: 29 LASSGGGNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPP 74
Score = 55.5 bits (132), Expect = 6e-08
Identities = 26/41 (63%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 205 GKKKGDGGGAGGGGGGG-GSGGGGSGGGGGGGSSRPPAPQE 244
G G GGGAGGG GGG G+GGGG+GG GGGG AP E
Sbjct: 35 GNGAGGGGGAGGGSGGGNGAGGGGAGGAGGGGGGGSRAPPE 75
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 56.6 bits (135), Expect = 2e-08
Identities = 29/54 (53%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 204 DGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEA 257
+G+ G GG GGGGGGGG GGGG GGGGGGG + AP T GL E+
Sbjct: 443 EGQLYGPCGG-GGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPPQGLAGQES 495
Score = 48.1 bits (113), Expect = 9e-06
Identities = 24/43 (55%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 199 QKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGG-GGGGSSRPP 240
Q P G G GGG GGGGGGGG GGGG G G +RPP
Sbjct: 445 QLYGPCGGGGGGGGGGGGGGGGGGGGGGGEAGAVAPYGYTRPP 487
Score = 47.4 bits (111), Expect = 2e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 207 KKGDGGGAGGGGGGGGSGGGGSGGGGGGG 235
++G G GGGGGGG GGGG GGGGGGG
Sbjct: 442 EEGQLYGPCGGGGGGGGGGGGGGGGGGGG 470
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 56.6 bits (135), Expect = 2e-08
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 198 EQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEA 257
+ +++P + G GGG GGGGGGGG GGG GGG GGG+ +P L G A
Sbjct: 49 DDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVRE------LDMGAA 102
Query: 258 -RTRDDGDEEGLLTHSEEELEHSQD 281
R+R+ G LT EL+ ++
Sbjct: 103 ERSREPGSPR--LTEVSPELKDRKE 125
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/41 (56%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 197 AEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
A + A G G GGG GGGGG GGGG+GGG GGG S
Sbjct: 55 AVRAAGGGGGGGGGGGGG---GGGGGVGGGGAGGGAGGGRS 92
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 55.8 bits (133), Expect = 4e-08
Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 177 ELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 236
E+ QI N L+ L Q+ + G G GGG+GG GGGGGSGGGG+ GG G S
Sbjct: 2265 EINQILENQRNFLNALTSPIEYQRNHSGG---GGGGGSGGSGGGGGSGGGGAPSGGSGHS 2321
Query: 237 SRPP----APQENTTSEAGLPQ 254
P AP + + + +PQ
Sbjct: 2322 GGPSSCGGAPSTSRSRPSRIPQ 2343
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 214 AGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTR 260
+GGGGGGG G GG GG GGGG+ + S G +R+R
Sbjct: 2291 SGGGGGGGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSR 2337
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 206 KKKGDGGGAGGGGGGGGSG-GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGD 264
K KG G G GGGG GGG G GGG GGGGGG P +AG+P+ + D D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 265 EEG 267
G
Sbjct: 121 SGG 123
Score = 41.6 bits (96), Expect = 8e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 209 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 258
G GG GGGGGGGG GG G G GG + P+ +T+ G +R
Sbjct: 76 GGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSR 125
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 209 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 253
G GGG GG GGGG G G G R A ++N + + P
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPP 127
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 55.5 bits (132), Expect = 6e-08
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 206 KKKGDGGGAGGGGGGGGSG-GGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGD 264
K KG G G GGGG GGG G GGG GGGGGG P +AG+P+ + D D
Sbjct: 61 KPKGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDND 120
Query: 265 EEG 267
G
Sbjct: 121 SGG 123
Score = 41.6 bits (96), Expect = 8e-04
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 209 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEAR 258
G GG GGGGGGGG GG G G GG + P+ +T+ G +R
Sbjct: 76 GGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSR 125
Score = 30.0 bits (66), Expect = 2.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 209 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLP 253
G GGG GG GGGG G G G R A ++N + + P
Sbjct: 83 GGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRPP 127
>gi|6912752 zinc finger protein 281 [Homo sapiens]
Length = 895
Score = 54.3 bits (129), Expect = 1e-07
Identities = 28/45 (62%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 211 GGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQG 255
GGG G GG GSGGGGSGGGGGGGSS A E T PQG
Sbjct: 10 GGGGTGSSGGSGSGGGGSGGGGGGGSSGRRAEMEPT-----FPQG 49
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/56 (42%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 209 GDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPA-PQENTTSEAGLPQGEARTRDDG 263
G G G G GGGGSGGGG GG G + P PQ LP + TR G
Sbjct: 13 GTGSSGGSGSGGGGSGGGGGGGSSGRRAEMEPTFPQGMVMFNHRLPPVTSFTRPAG 68
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 213 GAGGGGGGGGSGGGGSGGGGGGGSS 237
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 211 GGGAGGGGGGGGSGGGGSGGGGGGGSS 237
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 8e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 203 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 234
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 184 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 236
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 205 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 251
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 201 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 209 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 235
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.85
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 209 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 239
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 195 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 237
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 209 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 237
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.2
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 209 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 238
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 213 GAGGGGGGGGSGGGGSGGGGGGGSS 237
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 211 GGGAGGGGGGGGSGGGGSGGGGGGGSS 237
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 8e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 203 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 234
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 184 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 236
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 205 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 251
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 201 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 209 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 235
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.85
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 209 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 239
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 195 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 237
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 209 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 237
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.2
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 209 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 238
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 54.3 bits (129), Expect = 1e-07
Identities = 22/25 (88%), Positives = 23/25 (92%)
Query: 213 GAGGGGGGGGSGGGGSGGGGGGGSS 237
GAGGGGGGGG GGGGSGGGGGGG +
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGA 271
Score = 52.8 bits (125), Expect = 4e-07
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 211 GGGAGGGGGGGGSGGGGSGGGGGGGSS 237
GGG GGGGGGGGSGGGG GGG G G +
Sbjct: 250 GGGGGGGGGGGGSGGGGGGGGAGAGGA 276
Score = 51.6 bits (122), Expect = 8e-07
Identities = 21/32 (65%), Positives = 22/32 (68%)
Query: 203 PDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGG 234
P + G GGG GGGGGGGG GGG GGGG G
Sbjct: 241 PGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAG 272
Score = 50.8 bits (120), Expect = 1e-06
Identities = 24/53 (45%), Positives = 30/53 (56%)
Query: 184 NIDALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGS 236
++D L + E Q + G + GG GGGGGGGG G GG GGGGG G+
Sbjct: 221 SMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGGGGGGGSGGGGGGGGAGA 273
Score = 50.8 bits (120), Expect = 1e-06
Identities = 23/47 (48%), Positives = 25/47 (53%)
Query: 205 GKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAG 251
G G GGG GGGGG GG GGGG G GG G+ A + AG
Sbjct: 247 GAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAG 293
Score = 49.3 bits (116), Expect = 4e-06
Identities = 20/37 (54%), Positives = 23/37 (62%)
Query: 201 ANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSS 237
+ P G GGG GGGG GGG GGGG+G GG G +
Sbjct: 244 SRPGAGGGGGGGGGGGGGSGGGGGGGGAGAGGAGAGA 280
Score = 46.2 bits (108), Expect = 3e-05
Identities = 22/42 (52%), Positives = 25/42 (59%), Gaps = 15/42 (35%)
Query: 209 GDGGGAGGGGGGGGSGGGGSG---------------GGGGGG 235
G GGG+GGGGGGGG+G GG+G GGGGGG
Sbjct: 257 GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGG 298
Score = 31.6 bits (70), Expect = 0.85
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 17/48 (35%)
Query: 209 GDGGGAGGGG-----------------GGGGSGGGGSGGGGGGGSSRP 239
G GGGAG GG GGGG GG G G G S P
Sbjct: 266 GGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSP 313
Score = 30.4 bits (67), Expect = 1.9
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 195 IAAEQKANPDGKKKGDGGGAGGGGGGGG-------SGGGGSGGGGGGGSS 237
+AA A G GGG GG G G GGG G GGGG++
Sbjct: 281 VAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAA 330
Score = 30.0 bits (66), Expect = 2.5
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 209 GDGGGAGGGGGGGGSG--------GGG--SGGGGGGGSS 237
G GGG G GG G G GGG G GGGG +S
Sbjct: 293 GGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGGGAAS 331
Score = 29.3 bits (64), Expect = 4.2
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 17/47 (36%)
Query: 209 GDGGGAGG-----------------GGGGGGSGGGGSGGGGGGGSSR 238
G G GAGG GGGGGG GG S G G S R
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPR 314
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 34/233 (14%)
Query: 22 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH--------KGYAFVQYSNERHARAAVL 73
++F+G L+ KK D++ F+K+G V C++ +G+ F+ + + VL
Sbjct: 71 KMFVGGLSWDTSKK-DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK-VL 128
Query: 74 GENGRVLAGQTLDINMAGEPKPDRPK-----GLKRAASA--IYRLFDYRGRLSPVPVPRA 126
+ L G+ +D A K D K GL A+ I F G + + +P
Sbjct: 129 DQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMD 188
Query: 127 VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNID 186
+ + R V + K PVK T S +K ++K ++ + + +
Sbjct: 189 PKLNKRRGFVFIT--FKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQ--------- 237
Query: 187 ALLSRLEQIAAEQKANPDGKKKGDGGGAGGGGGGGGSGGGGSGGGGGGGSSRP 239
+Q + + N + +G GGG GGGG G + G GG + +P
Sbjct: 238 ------QQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKSQRRGGHQNNYKP 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.131 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,065,441
Number of Sequences: 37866
Number of extensions: 733092
Number of successful extensions: 35204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 9635
Number of HSP's gapped (non-prelim): 11088
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.