Guide to the Human Genome
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Name: LMBR1 Sequence: fasta or formatted (490aa) NCBI GI: 21362112
Description:

limb region 1 protein

Referenced in:

Hedgehog and Related Pathways
Lacrimal and Salivary Glands

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         30           2
 C cysteine            1.8          9           1
 D aspartate           3.1         15           2
 E glutamate           6.3         31           3
 F phenylalanine       6.3         31           3
 G glycine             5.5         27           1
 H histidine           1.2          6           1
 I isoleucine          7.1         35           2
 K lysine              3.9         19           2
 L leucine            17.6         86           5
 M methionine          2.7         13           1
 N asparagine          4.1         20           1
 P proline             2.7         13           1
 Q glutamine           2.2         11           1
 R arginine            4.3         21           2
 S serine              8.4         41           3
 T threonine           5.3         26           2
 V valine              6.9         34           2
 W tryptophan          1.2          6           1
 Y tyrosine            3.3         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   limb region 1 protein 
LMBR1L                0.591   lipocalin-interacting membrane receptor 
LMBRD1                0.022   liver regeneration p-53 related protein 
TPCN1                 0.015   two pore segment channel 1 isoform 1 
TPCN1                 0.015   two pore segment channel 1 isoform 2 
MYH3                  0.011   myosin, heavy chain 3, skeletal muscle, embryonic [H...
ATP8B4                0.009   ATPase class I type 8B member 4 
MYH9                  0.008   myosin, heavy polypeptide 9, non-muscle 
GCC2                  0.008   GRIP and coiled-coil domain-containing 2 
UACA                  0.008   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.008   uveal autoantigen with coiled-coil domains and ankyr...
MYH6                  0.008   myosin heavy chain 6 
LOC730658             0.006   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
PCNT                  0.006   pericentrin 
KCNG1                 0.006   potassium voltage-gated channel, subfamily G, member...
PEX3                  0.006   peroxisomal biogenesis factor 3 
ATP8B2                0.006   ATPase, class I, type 8B, member 2 isoform a 
LEKR1                 0.005   leucine, glutamate and lysine rich 1 
CDR2L                 0.005   cerebellar degeneration-related protein 2-like [Hom...
MYH2                  0.005   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.005   myosin, heavy chain 2, skeletal muscle, adult [Homo...
SLC35F2               0.005   solute carrier family 35, member F2 
UBN1                  0.005   ubinuclein 1 
UBN1                  0.005   ubinuclein 1 
ALOX5AP               0.005   arachidonate 5-lipoxygenase-activating protein [Homo...
ANKFN1                0.005   ankyrin-repeat and fibronectin type III domain cont...
CTAGE5                0.005   CTAGE family, member 5 isoform 3 
KIAA0195              0.005   hypothetical protein LOC9772 
PALLD                 0.004   palladin 
CENPE                 0.004   centromere protein E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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