Guide to the Human Genome
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Name: ALOX5AP Sequence: fasta or formatted (161aa) NCBI GI: 15718675
Description:

arachidonate 5-lipoxygenase-activating protein

Referenced in:

Arachidonate, Prostaglandins, and Leukotrienes
Glutathione Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         11           2
 C cysteine            1.2          2           1
 D aspartate           1.9          3           1
 E glutamate           3.7          6           1
 F phenylalanine       9.9         16           3
 G glycine             7.5         12           1
 H histidine           1.2          2           1
 I isoleucine          6.8         11           2
 K lysine              2.5          4           1
 L leucine            11.2         18           3
 M methionine          1.9          3           1
 N asparagine          4.3          7           1
 P proline             3.1          5           1
 Q glutamine           5.0          8           1
 R arginine            4.3          7           1
 S serine              6.2         10           1
 T threonine           7.5         12           2
 V valine              8.7         14           2
 W tryptophan          0.6          1           1
 Y tyrosine            5.6          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arachidonate 5-lipoxygenase-activating protein [Homo... 
MGST2                 0.201   microsomal glutathione S-transferase 2 
LTC4S                 0.178   leukotriene C4 synthase 
MGST3                 0.020   microsomal glutathione S-transferase 3 
LMBR1                 0.017   limb region 1 protein 
C1QTNF6               0.013   C1q and tumor necrosis factor related protein 6 [Hom...
C1QTNF6               0.013   C1q and tumor necrosis factor related protein 6 [Hom...
SLC44A4               0.007   choline transporter-like protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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