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Search of human proteins with 113430993
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
(101 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens] 212 6e-56
gi|5032161 elongin C [Homo sapiens] 93 5e-20
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 78 2e-15
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 78 2e-15
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 78 2e-15
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 71 2e-13
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 71 2e-13
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 71 2e-13
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ... 63 4e-11
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ... 63 4e-11
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens] 60 5e-10
gi|105990514 filamin B, beta (actin binding protein 278) [Homo s... 27 2.7
gi|4505859 pleiomorphic adenoma gene-like 2 [Homo sapiens] 26 5.9
gi|161019170 mucin 5AC [Homo sapiens] 26 7.7
gi|239753480 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 26 7.7
>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
Length = 101
Score = 212 bits (539), Expect = 6e-56
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MDEEEKTYSVCESSNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVN 60
MDEEEKTYSVCESSNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVN
Sbjct: 1 MDEEEKTYSVCESSNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVN 60
Query: 61 LRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFPFHLKLQNC 101
LRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFPFHLKLQNC
Sbjct: 61 LRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFPFHLKLQNC 101
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 92.8 bits (229), Expect = 5e-20
Identities = 52/98 (53%), Positives = 61/98 (62%), Gaps = 9/98 (9%)
Query: 1 MDEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55
MD EEKTY CE + M S+G+ EF+VK A TS T+K +L+GP FAE
Sbjct: 1 MDGEEKTYGGCEGPDAMYVKLISSDGH----EFIVKREHALTSGTIKAMLSGPGQFAENE 56
Query: 56 TIEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
T EVN R+ PS VL K C YFTY YT SSTEIP+FP
Sbjct: 57 TNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 77.8 bits (190), Expect = 2e-15
Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 1 MDEEEKTYSVCESSNTM-----MSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55
MD E+KTY CE + + +S+G+ EF+VK A TS T+K +L+GP FAE
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGH----EFIVKKERALTSGTIKAMLSGPGQFAENE 56
Query: 56 TIEVNLRDNPSQVLPKA---CKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ PS VL K C YF Y Y SSTEIP+FP
Sbjct: 57 ADEVHFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFP 97
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 77.8 bits (190), Expect = 2e-15
Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 1 MDEEEKTYSVCESSNTM-----MSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55
MD E+KTY CE + + +S+G+ EF+VK A TS T+K +L+GP FAE
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGH----EFIVKKERALTSGTIKAMLSGPGQFAENE 56
Query: 56 TIEVNLRDNPSQVLPKA---CKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ PS VL K C YF Y Y SSTEIP+FP
Sbjct: 57 ADEVHFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFP 97
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 77.8 bits (190), Expect = 2e-15
Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 12/101 (11%)
Query: 1 MDEEEKTYSVCESSNTM-----MSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKG 55
MD E+KTY CE + + +S+G+ EF+VK A TS T+K +L+GP FAE
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGH----EFIVKKERALTSGTIKAMLSGPGQFAENE 56
Query: 56 TIEVNLRDNPSQVLPKA---CKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ PS VL K C YF Y Y SSTEIP+FP
Sbjct: 57 ADEVHFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFP 97
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 70.9 bits (172), Expect = 2e-13
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 2 DEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
D +KTY CE + M S+G+ + +VK A TS T+K +L+GP AE
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGH----KVIVKREYAVTSITIKAMLSGPGQLAENEI 214
Query: 57 IEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ S VL K C Y TY HYT SSTEI KFP
Sbjct: 215 SEVSFREISSHVLSKVCMYVTYKGHYTNSSTEILKFP 251
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 70.9 bits (172), Expect = 2e-13
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 2 DEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
D +KTY CE + M S+G+ + +VK A TS T+K +L+GP AE
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGH----KVIVKREYAVTSITIKAMLSGPGQLAENEI 214
Query: 57 IEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ S VL K C Y TY HYT SSTEI KFP
Sbjct: 215 SEVSFREISSHVLSKVCMYVTYKGHYTNSSTEILKFP 251
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 70.9 bits (172), Expect = 2e-13
Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 2 DEEEKTYSVCESSNTMM-----SNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
D +KTY CE + M S+G+ + +VK A TS T+K +L+GP AE
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGH----KVIVKREYAVTSITIKAMLSGPGQLAENEI 232
Query: 57 IEVNLRDNPSQVLPKACKYFTYIFHYTYSSTEIPKFP 93
EV+ R+ S VL K C Y TY HYT SSTEI KFP
Sbjct: 233 SEVSFREISSHVLSKVCMYVTYNGHYTNSSTEILKFP 269
>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
Length = 120
Score = 63.2 bits (152), Expect = 4e-11
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1 MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57
M+ EEK+ S + M +G L+S + F+VK + S K +L+GP AE T
Sbjct: 1 MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
Query: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92
+VN R+ P + P KAC YFTY HY+ SSTEIP+F
Sbjct: 59 QVNFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF 96
>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
Length = 120
Score = 63.2 bits (152), Expect = 4e-11
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1 MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57
M+ EEK+ S + M +G L+S + F+VK + S K +L+GP AE T
Sbjct: 1 MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
Query: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92
+VN R+ P + P KAC YFTY HY+ SSTEIP+F
Sbjct: 59 QVNFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF 96
>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
Length = 181
Score = 59.7 bits (143), Expect = 5e-10
Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 1 MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57
M+ EEK+ S + M +G L+S + F+VK + S K +L+GP AE T
Sbjct: 1 MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
Query: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92
+VN R+ P + P KAC YFT HY+ SSTEIP+F
Sbjct: 59 QVNFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEF 96
>gi|105990514 filamin B, beta (actin binding protein 278) [Homo
sapiens]
Length = 2602
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 28 FLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVNLRDNPSQVLPKACKYFTYIFHYTYSST 87
F+V +TA +LT AE IE D + A K TY+ + +
Sbjct: 1636 FVVDAKTAGKGKVTCTVLTPDGTEAEADVIENE--DGTYDIFYTAAKPGTYVIYVRFGGV 1693
Query: 88 EIPKFPF 94
+IP PF
Sbjct: 1694 DIPNSPF 1700
>gi|4505859 pleiomorphic adenoma gene-like 2 [Homo sapiens]
Length = 496
Score = 26.2 bits (56), Expect = 5.9
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 2 DEEEKTYSVCESSNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGTIEVNL 61
+ E + CE S T SNG L P L + S P L FA K + ++
Sbjct: 33 EAESQVKCQCEISGTPFSNGEKLRPHSLPQPEQRPYSC---PQLHCGKAFASKYKLYRHM 89
Query: 62 RDNPSQVLPKACKYFTYIFH 81
+ +Q P C Y +FH
Sbjct: 90 ATHSAQ-KPHQCMYCDKMFH 108
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 SNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
+ T ++G LSP +RTA TSAT L G H E T
Sbjct: 3332 NTTATTHGRSLSPSSPHTVRTAWTSATSGTL--GTTHITEPST 3372
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 SNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
+ T ++G LSP +RTA TSAT L G H E T
Sbjct: 4479 NTTATTHGRSLSPSSPHTVRTAWTSATSGTL--GTTHITEPST 4519
>gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1344
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 32 IRTAQTSATMKPLLTGPDHFAEKGTIEVNLRDNPSQVL 69
+ T + + +P TG H + +GT ++ RDNP+Q +
Sbjct: 170 VHTEEAILSAEPQFTG-HHRSARGTPPLSSRDNPAQFM 206
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 SNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
+ T ++G LSP +RTA TSAT L G H E T
Sbjct: 2752 NTTATTHGRSLSPSSPHTVRTAWTSATSGTL--GTTHITEPST 2792
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 14 SNTMMSNGYLLSPEFLVKIRTAQTSATMKPLLTGPDHFAEKGT 56
+ T ++G LSP +RTA TSAT L G H E T
Sbjct: 4009 NTTATTHGRSLSPSSPHTVRTAWTSATSGTL--GTTHITEPST 4049
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,920,063
Number of Sequences: 37866
Number of extensions: 138371
Number of successful extensions: 268
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 23
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.