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Search of human proteins with 113428809
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113428809 PREDICTED: hypothetical protein [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113428809 PREDICTED: hypothetical protein [Homo sapiens] 489 e-138
gi|113428936 PREDICTED: hypothetical protein [Homo sapiens] 486 e-138
gi|169214712 PREDICTED: hypothetical protein [Homo sapiens] 477 e-135
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 38 0.009
gi|191252814 RIMS binding protein 3B [Homo sapiens] 37 0.015
gi|191252806 RIMS binding protein 3C [Homo sapiens] 37 0.015
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 37 0.015
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 37 0.015
gi|239756380 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo ... 37 0.019
gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo ... 37 0.019
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 37 0.019
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.025
gi|239756720 PREDICTED: hypothetical protein XP_002345024 [Homo ... 36 0.033
gi|239751215 PREDICTED: hypothetical protein XP_002347750 [Homo ... 36 0.033
gi|239745705 PREDICTED: hypothetical protein XP_002343521 [Homo ... 36 0.033
gi|239753500 PREDICTED: hypothetical protein [Homo sapiens] 35 0.056
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 35 0.073
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 35 0.073
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 35 0.073
gi|237512940 early growth response 4 [Homo sapiens] 35 0.073
gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 34 0.095
gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 34 0.095
gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens] 34 0.095
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 34 0.095
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 34 0.095
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 34 0.095
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 34 0.12
gi|66529407 tensin [Homo sapiens] 34 0.12
>gi|113428809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 489 bits (1258), Expect = e-138
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW 60
MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW
Sbjct: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW 60
Query: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP 120
DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP
Sbjct: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP 120
Query: 121 GWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
GWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT
Sbjct: 121 GWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
Query: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS
Sbjct: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
>gi|113428936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 486 bits (1251), Expect = e-138
Identities = 234/235 (99%), Positives = 234/235 (99%)
Query: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW 60
MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW
Sbjct: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW 60
Query: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP 120
DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP
Sbjct: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP 120
Query: 121 GWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
GWKKTAGGWRMRCAGISPRT AVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT
Sbjct: 121 GWKKTAGGWRMRCAGISPRTPAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
Query: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS
Sbjct: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
>gi|169214712 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 477 bits (1227), Expect = e-135
Identities = 231/235 (98%), Positives = 231/235 (98%)
Query: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGW 60
MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKN ESYPSSAFQPPNPRQEGAR GW
Sbjct: 1 MQIPVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNRESYPSSAFQPPNPRQEGARLGW 60
Query: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPP 120
DRSQPHFRRLHSPPGSDPFQQPPSRPINAAA SASRGDILAKTGIKSEIQALEAKAAVPP
Sbjct: 61 DRSQPHFRRLHSPPGSDPFQQPPSRPINAAARSASRGDILAKTGIKSEIQALEAKAAVPP 120
Query: 121 GWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
GWKKTAGGWRMRCAGISPRT AVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT
Sbjct: 121 GWKKTAGGWRMRCAGISPRTPAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHT 180
Query: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS
Sbjct: 181 TDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRNAREKSGRQRPLS 235
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 46.2 bits (108), Expect = 2e-05
Identities = 71/244 (29%), Positives = 92/244 (37%), Gaps = 36/244 (14%)
Query: 6 ASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQP 65
A+ PG SP RP V+ A R + + SS+F PP P R+
Sbjct: 11 AAPPGVAESPARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPG----FIHPPSSRAAV 66
Query: 66 HFRRLHSPPGSDPFQQP---PSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPGW 122
H RL + P + P P P AL+ SR A A + +AA P G
Sbjct: 67 H-SRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAA-------AHDQEAAAPTGR 118
Query: 123 KKTAGGWRMRCAGISPRTLAVSCSPFRKVP------LYLHPPLQFGARPRAQLPAG---- 172
+ WR R G SP S P + P L PP G RPRA+ G
Sbjct: 119 R-----WRRR-PGPSPPLQPRSRHPHTRYPRAVPEATPLRPPP--GTRPRAKSRPGCRSS 170
Query: 173 SLCPRPHTTDSA--YRTLPGPRGPR-GDLLKPTRLLGASPDAYLESGGRQSSRNAREKSG 229
R T A R P PR PR GD + + L +P S GR++ + A K
Sbjct: 171 PFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGT 230
Query: 230 RQRP 233
+P
Sbjct: 231 TPQP 234
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 37.7 bits (86), Expect = 0.009
Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 24/185 (12%)
Query: 42 PSSAFQPPNPRQEGAR-PGWDRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDIL 100
P QPP + + ++ P ++QP + + PG + QPP + + A +
Sbjct: 302 PPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQP 361
Query: 101 AKTGIKSEIQALEAKAAVPPGWKK-----TAGGWRMRCAGISPRTLAVSCSPFRKVPLYL 155
++ +Q +A V PG + GG +R P T AVS P +PL
Sbjct: 362 QVQQQQTAVQTAQAAQMVAPGVQMITEALAQGGMHIRAR--FPPTTAVSAIPSSSIPL-- 417
Query: 156 HPPLQFGARPRAQLPAGSL----CPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGASPDA 211
G +P AQ+ SL P P +++P P P +P+ + P++
Sbjct: 418 ------GRQPMAQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPSPQPGQPS----SQPNS 467
Query: 212 YLESG 216
+ SG
Sbjct: 468 NVSSG 472
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 37.0 bits (84), Expect = 0.015
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 6 ASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQP 65
+S+P G+ S S+ C P + R + S P ++ P D S P
Sbjct: 271 SSSPDGLLSTHASSLDCFAP----ACSRSLDSTRSLPKASKSEERPSSP------DTSTP 320
Query: 66 HFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPG 121
RRL PP P PP P LS RG G SE Q E PPG
Sbjct: 321 GSRRLSPPPSPLP---PPPPPSAHRKLSNPRG------GEGSESQPCEVLTPSPPG 367
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 37.0 bits (84), Expect = 0.015
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 6 ASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQP 65
+S+P G+ S S+ C P + R + S P ++ P D S P
Sbjct: 271 SSSPDGLLSTHASSLDCFAP----ACSRSLDSTRSLPKASKSEERPSSP------DTSTP 320
Query: 66 HFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPG 121
RRL PP P PP P LS RG G SE Q E PPG
Sbjct: 321 GSRRLSPPPSPLP---PPPPPSAHRKLSNPRG------GEGSESQPCEVLTPSPPG 367
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 37.0 bits (84), Expect = 0.015
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 19/116 (16%)
Query: 6 ASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQP 65
+S+P G+ S S+ C P + R + S P ++ P D S P
Sbjct: 271 SSSPDGLLSTHASSLDCFAP----ACSRSLDSTRSLPKASKSEERPSSP------DTSTP 320
Query: 66 HFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPG 121
RRL PP P PP P LS RG G SE Q E PPG
Sbjct: 321 GSRRLSPPPSPLP---PPPPPSAHRKLSNPRG------GEGSESQPCEVLTPSPPG 367
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 37.0 bits (84), Expect = 0.015
Identities = 61/217 (28%), Positives = 81/217 (37%), Gaps = 35/217 (16%)
Query: 4 PVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWD-- 61
P + PGG+F P ++ P +S+ R G + PS A PP P P ++
Sbjct: 176 PTLAGPGGLFPP---RLADPVPSGGSSSPRFLPRGNA-PSPA-PPPPPAISLNAPSYNWG 230
Query: 62 ---RSQPHFRRLHSPPGSDPFQQPPSRP--------INAAALSASRGDILAKTGIKSEIQ 110
RS L SPP PPS P + L S ++ A G S+
Sbjct: 231 AALRSSLVPSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSN-NLPAHPGPASQPP 289
Query: 111 ALEAKAAVPPGWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQ-----FGARP 165
A +P G + G P + S K HPPL G RP
Sbjct: 290 VSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQ---HPPLPPPSTLQGRRP 346
Query: 166 RAQLP----AGSLCP---RPHTTDSAYRTLPGPRGPR 195
RAQ P + SL P RP + +R L G RGP+
Sbjct: 347 RAQAPSASHSSSLRPSQRRPRRPPTVFRLLEG-RGPQ 382
Score = 30.0 bits (66), Expect = 1.8
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 18/68 (26%)
Query: 163 ARPRAQLPA--------GSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLE 214
ARP ++P GSL P P + A+ TL GP G L P RL P
Sbjct: 145 ARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGPGG-----LFPPRLADPVP----- 194
Query: 215 SGGRQSSR 222
SGG S R
Sbjct: 195 SGGSSSPR 202
>gi|239756380 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 90 AALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCA---GISPRTLAVSCS 146
A +A +I A+ G Q E +AA P + G R A G + R L +
Sbjct: 18 AGSAAGLREIPAERGDAGSEQGEEQEAAEHPSAPRPPGHGCARAAASFGRASRPLGSGAA 77
Query: 147 --PFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDSAYRTLPG---PRGPRGDLLKP 201
PF+ PL P L GA PRA+ P RPH LPG P GP DL
Sbjct: 78 FDPFKSAPLGAEPALSSGAVPRARRPP----RRPHPP----ARLPGRGTPFGPPRDLHTH 129
Query: 202 TRLLGASPDAYLESGG 217
T +P SGG
Sbjct: 130 TLARTRAPLPPGASGG 145
>gi|239750901 PREDICTED: hypothetical protein XP_002347602 [Homo
sapiens]
Length = 151
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 90 AALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCA---GISPRTLAVSCS 146
A +A +I A+ G Q E +AA P + G R A G + R L +
Sbjct: 18 AGSAAGLREIPAERGDAGSEQGEEQEAAEHPSAPRPPGHGCARAAASFGRASRPLGSGAA 77
Query: 147 --PFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDSAYRTLPG---PRGPRGDLLKP 201
PF+ PL P L GA PRA+ P RPH LPG P GP DL
Sbjct: 78 FDPFKSAPLGAEPALSSGAVPRARRPP----RRPHPP----ARLPGRGTPFGPPRDLHTH 129
Query: 202 TRLLGASPDAYLESGG 217
T +P SGG
Sbjct: 130 TLARTRAPLPPGASGG 145
>gi|239745293 PREDICTED: hypothetical protein XP_002343426 [Homo
sapiens]
Length = 151
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/136 (32%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 90 AALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCA---GISPRTLAVSCS 146
A +A +I A+ G Q E +AA P + G R A G + R L +
Sbjct: 18 AGSAAGLREIPAERGDAGSEQGEEQEAAEHPSAPRPPGHGCARAAASFGRASRPLGSGAA 77
Query: 147 --PFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDSAYRTLPG---PRGPRGDLLKP 201
PF+ PL P L GA PRA+ P RPH LPG P GP DL
Sbjct: 78 FDPFKSAPLGAEPALSSGAVPRARRPP----RRPHPP----ARLPGRGTPFGPPRDLHTH 129
Query: 202 TRLLGASPDAYLESGG 217
T +P SGG
Sbjct: 130 TLARTRAPLPPGASGG 145
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 36.6 bits (83), Expect = 0.019
Identities = 48/206 (23%), Positives = 65/206 (31%), Gaps = 53/206 (25%)
Query: 4 PVASTPGGVFSPGRPSVSCDTPIPA-------------------------ASAQRGTKNG 38
P A+ P G+ +P P S P P+ A T +
Sbjct: 1056 PPANPPSGLMNPSLPFTSSPDPTPSQNPLSLMMTQMSKYAMPSSTPLYHNAIKTIATSDD 1115
Query: 39 ESYPSSAFQPPNPRQEGARPGWDRSQPHFRRLHSPPGSDPF------QQPPSRPINAAAL 92
E P PP P +G+ PG SQP L+S P QQP S A L
Sbjct: 1116 ELLPDRPLLPPPPPPQGSGPGISNSQPSQMHLNSAAAQSPMGMNLPGQQPLSHEPPPAML 1175
Query: 93 SASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWR--MRCAGISPRTLAVSCSPFRK 150
+ L + + P + T G + M A P +L C P
Sbjct: 1176 PSP--------------TPLGSNIPLHPNAQGTGGPPQNSMMMAPGGPDSLNAPCGPVPS 1221
Query: 151 VPLYLHPPLQFGARPRAQLPAGSLCP 176
+ P PR Q P G++ P
Sbjct: 1222 SSQMMPFP------PRLQQPHGAMAP 1241
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.025
Identities = 46/170 (27%), Positives = 64/170 (37%), Gaps = 15/170 (8%)
Query: 34 GTKNGESYPSSAFQPPNPRQEGARPGWDRSQPHFRRLHSP---PGSDPFQQPPSRPINAA 90
G G+S P PP P Q+ +P + P H P P QQPP P +++
Sbjct: 48 GPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSS 107
Query: 91 ALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCAGISPR-TLAVSCSPFR 149
++G A G+ S A A ++ PP T+G G +P AV+ +P
Sbjct: 108 KPVVAQGPGPA-PGVGS---APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPG 163
Query: 150 KVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDS---AYRTLPGPRGPRG 196
P P P AG P P + PGP GP+G
Sbjct: 164 APP----PTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKG 209
>gi|239756720 PREDICTED: hypothetical protein XP_002345024 [Homo
sapiens]
Length = 303
Score = 35.8 bits (81), Expect = 0.033
Identities = 40/130 (30%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 111 ALEAKAAVPPGWKKTAGGWR-------MRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGA 163
A AV W K G WR RC G P A C+ P L P GA
Sbjct: 97 AAPGNTAVTIWWLKKLGSWRSLALAVLQRCRGQVP---ADHCAAEAVGPWRLGP----GA 149
Query: 164 RPRAQLPAGSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRN 223
+ + +L A R H AY PGP GP +P L + LE R S+
Sbjct: 150 KEKKRLSASQARLRSHLQPGAYCQAPGP-GPHHQ-QRPRPLGSIAAQEGLEQLLRLSTPR 207
Query: 224 AREKSGRQRP 233
A R RP
Sbjct: 208 ATLPGARSRP 217
>gi|239751215 PREDICTED: hypothetical protein XP_002347750 [Homo
sapiens]
Length = 303
Score = 35.8 bits (81), Expect = 0.033
Identities = 40/130 (30%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 111 ALEAKAAVPPGWKKTAGGWR-------MRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGA 163
A AV W K G WR RC G P A C+ P L P GA
Sbjct: 97 AAPGNTAVTIWWLKKLGSWRSLALAVLQRCRGQVP---ADHCAAEAVGPWRLGP----GA 149
Query: 164 RPRAQLPAGSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRN 223
+ + +L A R H AY PGP GP +P L + LE R S+
Sbjct: 150 KEKKRLSASQARLRSHLQPGAYCQAPGP-GPHHQ-QRPRPLGSIAAQEGLEQLLRLSTPR 207
Query: 224 AREKSGRQRP 233
A R RP
Sbjct: 208 ATLPGARSRP 217
>gi|239745705 PREDICTED: hypothetical protein XP_002343521 [Homo
sapiens]
Length = 303
Score = 35.8 bits (81), Expect = 0.033
Identities = 40/130 (30%), Positives = 47/130 (36%), Gaps = 16/130 (12%)
Query: 111 ALEAKAAVPPGWKKTAGGWR-------MRCAGISPRTLAVSCSPFRKVPLYLHPPLQFGA 163
A AV W K G WR RC G P A C+ P L P GA
Sbjct: 97 AAPGNTAVTIWWLKKLGSWRSLALAVLQRCRGQVP---ADHCAAEAVGPWRLGP----GA 149
Query: 164 RPRAQLPAGSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGASPDAYLESGGRQSSRN 223
+ + +L A R H AY PGP GP +P L + LE R S+
Sbjct: 150 KEKKRLSASQARLRSHLQPGAYCQAPGP-GPHHQ-QRPRPLGSIAAQEGLEQLLRLSTPR 207
Query: 224 AREKSGRQRP 233
A R RP
Sbjct: 208 ATLPGARSRP 217
>gi|239753500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.056
Identities = 22/72 (30%), Positives = 29/72 (40%)
Query: 49 PNPRQEGARPGWDRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSE 108
P+PR AR P RL P +P + P+R + AA SA R A G +
Sbjct: 11 PSPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGS 70
Query: 109 IQALEAKAAVPP 120
L A + P
Sbjct: 71 TPGLAASRELSP 82
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 34.7 bits (78), Expect = 0.073
Identities = 45/157 (28%), Positives = 56/157 (35%), Gaps = 25/157 (15%)
Query: 59 GWDRSQPHFRRLHSPPGS------------------DPFQQPPSRPINAAALSASRGDIL 100
G QP RRL PPGS P ++ P R A L AS L
Sbjct: 92 GAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGL 151
Query: 101 AKTGIKSEIQALEAKAAVPPGW--KKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPP 158
++ ++ A A +P G AG WR C + P L + P L P
Sbjct: 152 RPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRP--LLLQPPPMLSPGLAQSPG 209
Query: 159 LQFGARPRAQLPAGSLCP-RPHTTDSAYRTLPGPRGP 194
++ AR LPA S P P A RT P P
Sbjct: 210 VELHAR-TLSLPAPSPAPCLPPPAPPAART-PSAHSP 244
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 34.7 bits (78), Expect = 0.073
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 49 PNPRQEGARPGWDRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSE 108
P PR AR P RL P +P + P+R + AA SA R A G +
Sbjct: 11 PRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGS 70
Query: 109 IQALEAKAAVPP 120
L A + P
Sbjct: 71 TPGLAASRELSP 82
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 34.7 bits (78), Expect = 0.073
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 49 PNPRQEGARPGWDRSQPHFRRLHSPPGSDPFQQPPSRPINAAALSASRGDILAKTGIKSE 108
P PR AR P RL P +P + P+R + AA SA R A G +
Sbjct: 11 PRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREGSAAPDGARGS 70
Query: 109 IQALEAKAAVPP 120
L A + P
Sbjct: 71 TPGLAASRELSP 82
>gi|237512940 early growth response 4 [Homo sapiens]
Length = 589
Score = 34.7 bits (78), Expect = 0.073
Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 22/174 (12%)
Query: 23 DTPIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQPHFRR---LHSPPGSDPF 79
+ P P A A R + GE P ++ P P+ + ARP PH RR LH S+P
Sbjct: 59 ECPKPGARAPRSVRCGEPLPPASPPPARPQAQRARP----RAPHSRRRAMLHLSEFSEP- 113
Query: 80 QQPPSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCAGISPR 139
+A + ++ G + + A +A AA W + G S
Sbjct: 114 --------DALLVKSTEGCCAEPSAELPRLPARDAPAATGYPGAGDFLSWALNSCGAS-G 164
Query: 140 TLAVSCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDSAYRTLPGPRG 193
LA SC F + P PP G ++ PH ++ + + G G
Sbjct: 165 DLADSC--FLEGPAPTPPP---GLSYSGSFFIQAVPEHPHDPEALFNLMSGILG 213
>gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo
sapiens]
Length = 470
Score = 34.3 bits (77), Expect = 0.095
Identities = 48/181 (26%), Positives = 62/181 (34%), Gaps = 43/181 (23%)
Query: 59 GWDRSQPHFRRLHSPPGS------------------DPFQQPPSRPINAAALSASRGDIL 100
G QP RRL PPGS P ++ P R A L AS L
Sbjct: 92 GAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGL 151
Query: 101 AKTGIKSEIQALEAKAAVPPGW--KKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPP 158
++ ++ A A +P G AG WR C + P L + P L P
Sbjct: 152 RPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRP--LLLQPPPMLSPGLAQSPG 209
Query: 159 LQFGARPRAQL----------PAGSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGAS 208
++ AR ++ P + RP DS PR P PTR G S
Sbjct: 210 VELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDS-------PRFPD----VPTRPAGPS 258
Query: 209 P 209
P
Sbjct: 259 P 259
>gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo
sapiens]
Length = 470
Score = 34.3 bits (77), Expect = 0.095
Identities = 48/181 (26%), Positives = 62/181 (34%), Gaps = 43/181 (23%)
Query: 59 GWDRSQPHFRRLHSPPGS------------------DPFQQPPSRPINAAALSASRGDIL 100
G QP RRL PPGS P ++ P R A L AS L
Sbjct: 92 GAGAQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHGLPASEAPGL 151
Query: 101 AKTGIKSEIQALEAKAAVPPGW--KKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPP 158
++ ++ A A +P G AG WR C + P L + P L P
Sbjct: 152 RPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRP--LLLQPPPMLSPGLAQSPG 209
Query: 159 LQFGARPRAQL----------PAGSLCPRPHTTDSAYRTLPGPRGPRGDLLKPTRLLGAS 208
++ AR ++ P + RP DS PR P PTR G S
Sbjct: 210 VELHARAHSRAHTCAGGGEGDPGPIVGGRPENEDS-------PRFPD----VPTRPAGPS 258
Query: 209 P 209
P
Sbjct: 259 P 259
>gi|55953100 tubby like protein 4 isoform 1 [Homo sapiens]
Length = 1543
Score = 34.3 bits (77), Expect = 0.095
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 144 SCSPFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPH 179
+CS + P+ LHP + A P Q P G+L P+PH
Sbjct: 1249 TCSSLQLPPVALHPWSSYSACPPMQNPQGTLPPKPH 1284
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 34.3 bits (77), Expect = 0.095
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 25 PIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQPHFRRLHSPPGS-------- 76
P P S+Q S + P Q+GA+P P + SPP
Sbjct: 1433 PFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNFPQSPPAQYSPMHNMG 1492
Query: 77 ----DPFQQP-PSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTA--GGW 129
P Q P PS PI+ + ++ G + G+ AA P T+ G W
Sbjct: 1493 LLPMHPLQIPAPSWPIHGPVIHSAPGSAPSNIGLNDPSIIFAQPAARPVAIPNTSHDGHW 1552
Query: 130 RMRCAGISPRTLAVSCSPFRKVPLY--LHPPLQFGARPRAQLP 170
++P +L S + P + L PP+ + PR P
Sbjct: 1553 PRT---VAPNSLVNSGAVGNSEPGFRGLTPPIPWEHAPRPHFP 1592
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 34.3 bits (77), Expect = 0.095
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 25 PIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQPHFRRLHSPPGS-------- 76
P P S+Q S + P Q+GA+P P + SPP
Sbjct: 1432 PFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNFPQSPPAQYSPMHNMG 1491
Query: 77 ----DPFQQP-PSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTA--GGW 129
P Q P PS PI+ + ++ G + G+ AA P T+ G W
Sbjct: 1492 LLPMHPLQIPAPSWPIHGPVIHSAPGSAPSNIGLNDPSIIFAQPAARPVAIPNTSHDGHW 1551
Query: 130 RMRCAGISPRTLAVSCSPFRKVPLY--LHPPLQFGARPRAQLP 170
++P +L S + P + L PP+ + PR P
Sbjct: 1552 PRT---VAPNSLVNSGAVGNSEPGFRGLTPPIPWEHAPRPHFP 1591
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 34.3 bits (77), Expect = 0.095
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 20/163 (12%)
Query: 25 PIPAASAQRGTKNGESYPSSAFQPPNPRQEGARPGWDRSQPHFRRLHSPPGS-------- 76
P P S+Q S + P Q+GA+P P + SPP
Sbjct: 1428 PFPQNSSQSAAITQPSSQPGSQPKLGPPQQGAQPPHQVQMPLYNFPQSPPAQYSPMHNMG 1487
Query: 77 ----DPFQQP-PSRPINAAALSASRGDILAKTGIKSEIQALEAKAAVPPGWKKTA--GGW 129
P Q P PS PI+ + ++ G + G+ AA P T+ G W
Sbjct: 1488 LLPMHPLQIPAPSWPIHGPVIHSAPGSAPSNIGLNDPSIIFAQPAARPVAIPNTSHDGHW 1547
Query: 130 RMRCAGISPRTLAVSCSPFRKVPLY--LHPPLQFGARPRAQLP 170
++P +L S + P + L PP+ + PR P
Sbjct: 1548 PRT---VAPNSLVNSGAVGNSEPGFRGLTPPIPWEHAPRPHFP 1587
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 33.9 bits (76), Expect = 0.12
Identities = 51/217 (23%), Positives = 66/217 (30%), Gaps = 50/217 (23%)
Query: 6 ASTPGGVFSPGRPSVSCDTPIPAASAQRGT-----------------------KNGESYP 42
A PG G+P V T +P ++G K G++ P
Sbjct: 654 AGEPGPPGPEGQPGVDGATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKKGQAGP 713
Query: 43 SSAFQPPNPRQEGARPGWDRSQPHFRRLHSPPGSDPFQQPP--SRPINAAALSASRGDIL 100
PP P PG + GS P SRP A L +GD
Sbjct: 714 PGVMGPPGPPGPPGPPGPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIGLKGEKGD-- 771
Query: 101 AKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCAGISPRTLAVSCSPFRKVPLYLHPPLQ 160
G K E A PPG + G ++ S + F +P + PP
Sbjct: 772 --RGPKGERGMDGASIVGPPGPRGPPG--HIKVLSNSLINITHGFMNFSDIPELVGPP-- 825
Query: 161 FGARPRAQLPAGSLCPRPHTTDSAYRTLPGPRGPRGD 197
G LP PGPRGP+GD
Sbjct: 826 -GPDGLPGLPG----------------FPGPRGPKGD 845
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 33.9 bits (76), Expect = 0.12
Identities = 58/253 (22%), Positives = 79/253 (31%), Gaps = 70/253 (27%)
Query: 4 PVASTPGGVFSPGRPSVSCDTPIPAASAQRGTKNGESYPSSAFQP----PNPRQEGARPG 59
P+ + G + P S+ P P AS + G SY +QP PN P
Sbjct: 758 PLTQSRSG-YIPSGHSLGTPEPAPRASLE-SVPPGRSYSPYDYQPCLAGPNQDFHSKSPA 815
Query: 60 WDRSQPHFRRLHSPPG-----------------------SDPFQQPPSRPINAAALSASR 96
HSPPG SDP + P P+N L A R
Sbjct: 816 SSSLPAFLPTTHSPPGPQQPPASLPGLTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHR 875
Query: 97 GDILAKTGIKSEIQALEAKAAVPPGWKKTAGGWRMRCAGISPRTLA---------VSC-S 146
+ +QA E + A PP + + SP + V C S
Sbjct: 876 ---------VAGVQAREKQPAEPPAPLRRRAASDGQYENQSPEATSPRSPGVRSPVQCVS 926
Query: 147 PFRKVPLYLHPPLQFGARPRAQLPAGSLCPRPHTTDSAYRTLPGP----------RGPRG 196
P + + L+P G RP+ P H+ A+ + G R P G
Sbjct: 927 PELALTIALNP----GGRPKE--------PHLHSYKEAFEEMEGTSPSSPPPSGVRSPPG 974
Query: 197 DLLKPTRLLGASP 209
P LG P
Sbjct: 975 LAKTPLSALGLKP 987
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,565,185
Number of Sequences: 37866
Number of extensions: 768519
Number of successful extensions: 3267
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 229
Number of HSP's that attempted gapping in prelim test: 2918
Number of HSP's gapped (non-prelim): 624
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.