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Search of human proteins with 208431840
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208431840 lymphocyte antigen 6 complex, locus H isoform b
[Homo sapiens]
(161 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho... 340 2e-94
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho... 340 2e-94
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho... 299 8e-82
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens] 58 3e-09
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens] 58 3e-09
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 47 5e-06
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s... 47 5e-06
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ... 47 5e-06
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 47 9e-06
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 44 8e-05
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ... 43 1e-04
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 40 7e-04
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.013
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.013
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 36 0.013
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 36 0.016
gi|9966907 ARS component B precursor [Homo sapiens] 34 0.048
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.53
gi|24041035 notch 2 preproprotein [Homo sapiens] 30 0.69
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 30 0.69
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 30 0.69
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 30 0.69
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 30 0.69
gi|54873613 agrin [Homo sapiens] 30 0.90
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 30 0.90
gi|31563503 activity-dependent neuroprotector [Homo sapiens] 30 0.90
gi|12229217 activity-dependent neuroprotector [Homo sapiens] 30 0.90
gi|5032115 sprouty 2 [Homo sapiens] 30 1.2
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens] 30 1.2
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens] 30 1.2
>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 340 bits (873), Expect = 2e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
Sbjct: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
Query: 61 CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK
Sbjct: 61 CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
Query: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP
Sbjct: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
sapiens]
Length = 161
Score = 340 bits (873), Expect = 2e-94
Identities = 161/161 (100%), Positives = 161/161 (100%)
Query: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
Sbjct: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
Query: 61 CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK
Sbjct: 61 CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
Query: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP
Sbjct: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
sapiens]
Length = 140
Score = 299 bits (765), Expect = 8e-82
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 22 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 81
MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP
Sbjct: 1 MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60
Query: 82 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 141
SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP
Sbjct: 61 SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120
Query: 142 WALAGGLLLSLGPALLWAGP 161
WALAGGLLLSLGPALLWAGP
Sbjct: 121 WALAGGLLLSLGPALLWAGP 140
>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 58.2 bits (139), Expect = 3e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
Query: 91 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
Query: 148 LLLSLGPALLWAGP 161
LLLSL PALL GP
Sbjct: 118 LLLSLLPALLRFGP 131
>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
Length = 131
Score = 58.2 bits (139), Expect = 3e-09
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
LLA LL A L C C ++ +C P C D C +V + + HS+
Sbjct: 8 LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67
Query: 91 NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
+K C+ +C + +N G+ + + CC+ LCN +A G S L G
Sbjct: 68 SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117
Query: 148 LLLSLGPALLWAGP 161
LLLSL PALL GP
Sbjct: 118 LLLSLLPALLRFGP 131
>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 5e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 27 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 86 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 144 LAGGLLLSLGPALLWA 159
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 5e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 27 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 86 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 144 LAGGLLLSLGPALLWA 159
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
sapiens]
Length = 190
Score = 47.4 bits (111), Expect = 5e-06
Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)
Query: 27 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
M+ L + LL +C+A A L C C HC +C P+D C R T P
Sbjct: 1 MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57
Query: 86 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
V K C+ +C ++S + V CC+ CN +A AG SP
Sbjct: 58 ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100
Query: 144 LAGGLLLSLGPALLWA 159
G L S+ + LWA
Sbjct: 101 --GTLWASIAASQLWA 114
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 46.6 bits (109), Expect = 9e-06
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 32 LALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVN 91
L L A+ + + PA L C CT ++N H C S C + +P + + V
Sbjct: 6 LLLAALAVATGPALTLRCHVCTSSSNCKHSV--VCPASSRFCKTTNTVEP---LRGNLVK 60
Query: 92 KMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAA-GAGHSPWALAGGLLL 150
K CA SC S L G ++SG CC++DLCN A + ALA L
Sbjct: 61 KDCAESCT------PSYTLQGQVSSG--TSSTQCCQEDLCNEKLHNAAPTRTALAHS-AL 111
Query: 151 SLGPAL 156
SLG AL
Sbjct: 112 SLGLAL 117
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 43.5 bits (101), Expect = 8e-05
Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 27 MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTP-KQCQPSDTVCASVRITDPSSSR 85
MK + LALL L P L C C ++ C + C C + RI
Sbjct: 1 MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLT 60
Query: 86 KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALA 145
++K C+ +C + DY +G K ++ CC+ DLCN + P A
Sbjct: 61 V---ISKGCSLNCVDDSQ----DYYVG-------KKNITCCDTDLCNASGAHALQPAAAI 106
Query: 146 GGLLLSLGPALLWAGP 161
LL +LG LLW GP
Sbjct: 107 LALLPALG-LLLW-GP 120
>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
sapiens]
Length = 97
Score = 42.7 bits (99), Expect = 1e-04
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 29 GLGLALLAVL-LCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKD 87
G GL L AVL L A A +WC CT SH +C T C + S++
Sbjct: 4 GTGLLLAAVLSLQLAAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDL 61
Query: 88 HSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
V KMC C + Y V + CC+ LCN
Sbjct: 62 PLVTKMCHIGCPDIPSLGLGPY-----------VSIACCQTSLCN 95
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 40.4 bits (93), Expect = 7e-04
Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 22/114 (19%)
Query: 27 MKGLGLALLAVLL--CSAPAHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASV----RIT 79
M+G LALLA++L C A L C C T S C T C ++T+C + I
Sbjct: 1 MRGTRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIV 60
Query: 80 DPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK-VDVDCCEKDLCN 132
P D +V K CAS C SD GI + + V CC +LCN
Sbjct: 61 YPFQG--DSTVTKSCASKCKP------SDV------DGIGQTLPVSCCNTELCN 100
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.013
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 32 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 90 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 150 LSL 152
+L
Sbjct: 110 ATL 112
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.013
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 32 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 90 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 150 LSL 152
+L
Sbjct: 110 ATL 112
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 36.2 bits (82), Expect = 0.013
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 32 LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
L L+ V+L P A L C C N +C P +C C + R + K
Sbjct: 5 LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59
Query: 90 VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
V+K C C F G+ CC+ DLCNG A + ALA LL
Sbjct: 60 VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109
Query: 150 LSL 152
+L
Sbjct: 110 ATL 112
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
Length = 131
Score = 35.8 bits (81), Expect = 0.016
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 41 SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 100
++ A +WC CT SH +C T C + S++ V KMC C
Sbjct: 51 TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108
Query: 101 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
+ Y V + CC+ LCN
Sbjct: 109 IPSLGLGPY-----------VSIACCQTSLCN 129
>gi|9966907 ARS component B precursor [Homo sapiens]
Length = 103
Score = 34.3 bits (77), Expect = 0.048
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 47 LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 103
L C C S+ C T +C+P DT C + +T + + S V + C+SSC
Sbjct: 23 LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82
Query: 104 HFFSDYLMGFINSGILKVDVDCCEKDLCN 132
+ F CC +DLCN
Sbjct: 83 DSIGAAHLIF-----------CCFRDLCN 100
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 30.8 bits (68), Expect = 0.53
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 3 APQRTRAPSPRAAPRPTRSMLPAAMKGL-GLALLAVLLCSAPAHGLWCQDCTLTTNSSHC 61
+P R R P P PRPT + PAA+ L + + A + SAP +T H
Sbjct: 2430 SPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPN--------PITILPVHI 2481
Query: 62 TPKQCQPSD-TVCASVRITDP 81
P PS C+S T P
Sbjct: 2482 LPSPPPPSQIPPCSSPACTPP 2502
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 30.4 bits (67), Expect = 0.69
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 23 LPAAMKGLGLALLAV-LLCSAPAHGLWCQD 51
+PA L ALLA+ L C+APAH L C+D
Sbjct: 1 MPALRPALLWALLALWLCCAAPAHALQCRD 30
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 30.4 bits (67), Expect = 0.69
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 51 DCTLTTNSSHCTPKQCQPSDTVCASVRI------TDPSSSRKDHSVNKMCASSCD 99
DC ++ CTP+ C S+ CA+ R D D S K C CD
Sbjct: 3560 DCGDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3614
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 53 TLTTNSSHCTPKQCQPSDTVCASVR 77
T N S+ P QCQP + CA+ R
Sbjct: 841 TCLANPSYVPPPQCQPGEFACANSR 865
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 30.4 bits (67), Expect = 0.69
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 49 CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 103
C +CT S CT +CQ T+C VR D K +S + +C S
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342
Query: 104 HFFSDYLMGFINS--GILKVDVDCCEKDL 130
F DY G N IL V CCE L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 30.4 bits (67), Expect = 0.69
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 49 CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 103
C +CT S CT +CQ T+C VR D K +S + +C S
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342
Query: 104 HFFSDYLMGFINS--GILKVDVDCCEKDL 130
F DY G N IL V CCE L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369
>gi|126012573 low density lipoprotein-related protein 2 [Homo
sapiens]
Length = 4655
Score = 30.4 bits (67), Expect = 0.69
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCTP 63
LLA++ C APA G C S HC P
Sbjct: 13 LLALVACLAPASGQECDSAHFRCGSGHCIP 42
Score = 30.0 bits (66), Expect = 0.90
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 50 QDCTLTTNSSH---CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCD 99
QDC+ +T SSH C+ QC PS+ C VR + D +CD
Sbjct: 101 QDCSQSTCSSHQITCSNGQCIPSEYRCDHVRDCPDGADENDCQYPTCEQLTCD 153
Score = 26.6 bits (57), Expect = 9.9
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 49 CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF-VKRHFFS 107
C+D + +SSHC + C+P CA+ R P + + D V+ C D ++ S
Sbjct: 3619 CEDNS-DEDSSHCASRTCRPGQFRCANGRCI-PQAWKCD--VDNDCGDHSDEPIEECMSS 3674
Query: 108 DYLMGFINSGILKVDVDCCEK-DLCNG 133
+L K + C K +CNG
Sbjct: 3675 AHLCDNFTEFSCKTNYRCIPKWAVCNG 3701
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 30.0 bits (66), Expect = 0.90
Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 40 CSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCAS-SC 98
CS G DC T C P P C R P+ D S CA C
Sbjct: 847 CSCDPQGAVRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRC 906
Query: 99 DFVKR 103
+F R
Sbjct: 907 EFGAR 911
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 30.0 bits (66), Expect = 0.90
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 10 PSPRAAPRPTRSMLPAAMK--------GLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHC 61
P+P P P R L L ALL +L C A LW C L T + C
Sbjct: 171 PAPARDPAPRRGRLARCWARCRDWRRMALVSALLLMLFCVA----LWPVQCALKTGNLRC 226
Query: 62 TPKQCQPSDTVCAS 75
P +P T A+
Sbjct: 227 LPLPPRPPATSTAA 240
>gi|31563503 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 30.0 bits (66), Expect = 0.90
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 64 KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 115
KQ +P+D T V + DPS ++ +D+ C S+C F + FFS Y F N
Sbjct: 39 KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95
>gi|12229217 activity-dependent neuroprotector [Homo sapiens]
Length = 1102
Score = 30.0 bits (66), Expect = 0.90
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 64 KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 115
KQ +P+D T V + DPS ++ +D+ C S+C F + FFS Y F N
Sbjct: 39 KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95
>gi|5032115 sprouty 2 [Homo sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 1.2
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 29 GLGLALLAVLLCSAPAHGLW--CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRK 86
G+ L L C PA G CQ C N C +C+ S+TVC V P + K
Sbjct: 257 GVMSLFLPCLWCYLPAKGCLKLCQGCYDRVNRPGC---RCKNSNTVCCKVPTVPPRNFEK 313
>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
Length = 1184
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAH---------GLWCQD 51
++ P+ R P P AAPR A + L L A L S P G CQ
Sbjct: 559 LIVPEVRRPPEPAAAPRRVSEAEMAGREALSLGTEAELPNSLPGDDQDECLLLPGELCQH 618
Query: 52 -CTLTTNSSHC 61
C T S HC
Sbjct: 619 LCINTVGSYHC 629
>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
Length = 1231
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 1 MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAH---------GLWCQD 51
++ P+ R P P AAPR A + L L A L S P G CQ
Sbjct: 559 LIVPEVRRPPEPAAAPRRVSEAEMAGREALSLGTEAELPNSLPGDDQDECLLLPGELCQH 618
Query: 52 -CTLTTNSSHC 61
C T S HC
Sbjct: 619 LCINTVGSYHC 629
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,314,676
Number of Sequences: 37866
Number of extensions: 353699
Number of successful extensions: 1732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 137
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.