Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 20631980
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20631980 DOM-3 homolog Z [Homo sapiens]
(396 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20631980 DOM-3 homolog Z [Homo sapiens] 847 0.0
gi|9951913 G protein-coupled receptor 162 isoform 2 [Homo sapiens] 32 0.77
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 32 1.0
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 32 1.0
gi|239750286 PREDICTED: hypothetical protein XP_002347353 [Homo ... 31 1.7
gi|239744595 PREDICTED: hypothetical protein XP_002343205 [Homo ... 31 1.7
gi|239755784 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|156104872 Ets2 repressor factor [Homo sapiens] 31 2.2
gi|5729862 stem-loop (histone) binding protein [Homo sapiens] 30 3.8
gi|27764882 leprecan-like 1 isoform a [Homo sapiens] 30 5.0
gi|149944548 neurobeachin-like 2 [Homo sapiens] 30 5.0
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 29 6.5
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 29 6.5
gi|30425410 R3H domain containing-like [Homo sapiens] 29 6.5
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 29 8.5
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 29 8.5
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens] 29 8.5
gi|150170699 kinesin family member 26A [Homo sapiens] 29 8.5
gi|68800032 tetraspanin 4 isoform b [Homo sapiens] 29 8.5
gi|68800005 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
gi|4507543 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
gi|68800018 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
gi|68800024 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
gi|68800011 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
gi|68799997 tetraspanin 4 isoform a [Homo sapiens] 29 8.5
>gi|20631980 DOM-3 homolog Z [Homo sapiens]
Length = 396
Score = 847 bits (2187), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MDPRGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQY 60
MDPRGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQY
Sbjct: 1 MDPRGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQY 60
Query: 61 HGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGG 120
HGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGG
Sbjct: 61 HGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLEGG 120
Query: 121 PGWLAEAIVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPL 180
PGWLAEAIVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPL
Sbjct: 121 PGWLAEAIVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSEVETPNARAQRLARPPL 180
Query: 181 LRELMYMGYKFEQYMCADKPGSSPDPSGEVNTNVAFCSVLRSRLGSHPLLFSGEVDCTDP 240
LRELMYMGYKFEQYMCADKPGSSPDPSGEVNTNVAFCSVLRSRLGSHPLLFSGEVDCTDP
Sbjct: 181 LRELMYMGYKFEQYMCADKPGSSPDPSGEVNTNVAFCSVLRSRLGSHPLLFSGEVDCTDP 240
Query: 241 QAPSTQPPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGVPNVVAGFRNPDGFV 300
QAPSTQPPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGVPNVVAGFRNPDGFV
Sbjct: 241 QAPSTQPPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGVPNVVAGFRNPDGFV 300
Query: 301 SSLKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGP 360
SSLKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGP
Sbjct: 301 SSLKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGP 360
Query: 361 VTVSVHQDAPYAFLPIWYVEAMTQDLPSPPKTPSPK 396
VTVSVHQDAPYAFLPIWYVEAMTQDLPSPPKTPSPK
Sbjct: 361 VTVSVHQDAPYAFLPIWYVEAMTQDLPSPPKTPSPK 396
>gi|9951913 G protein-coupled receptor 162 isoform 2 [Homo sapiens]
Length = 588
Score = 32.3 bits (72), Expect = 0.77
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 303 LKTFPTMKMFEYVRNDRDGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVHLFSWEPGGPVT 362
L TF +++ +D D WN S+C F + + + A +T H W PV
Sbjct: 67 LTTFAVVQLRRQASSDYD-WNESICKVFVSTYYTLALATCFTVASLSYHRM-WMVRWPVN 124
Query: 363 V---SVHQDAPYAFLPIWYVEAMTQDLPS 388
+ + A +A + IW V + LPS
Sbjct: 125 YRLSNAKKQALHAVMGIWMVSFILSTLPS 153
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 1.0
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGD 63
RG +RG A+P + S P A + P P + RP + + H
Sbjct: 39 RGVRRGVSPVAQADPAQDASSFSYSTPVQTA--TNPGPRHLRPE-------TSSSKQHFR 89
Query: 64 ARALRYYSPP-----PTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLE 118
+A R SPP P NGP P G+P +PR LL HR R
Sbjct: 90 TKAPRNLSPPGRARSPRNGP-PLLVSHTGFPSPNRPRPAP----------HLLGHRLRGP 138
Query: 119 GG 120
GG
Sbjct: 139 GG 140
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 1.0
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGD 63
RG +RG A+P + S P A + P P + RP + + H
Sbjct: 39 RGVRRGVSPVAQADPAQDASSFSYSTPVQTA--TNPGPRHLRPE-------TSSSKQHFR 89
Query: 64 ARALRYYSPP-----PTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLE 118
+A R SPP P NGP P G+P +PR LL HR R
Sbjct: 90 TKAPRNLSPPGRARSPRNGP-PLLVSHTGFPSPNRPRPAP----------HLLGHRLRGP 138
Query: 119 GG 120
GG
Sbjct: 139 GG 140
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 32.0 bits (71), Expect = 1.0
Identities = 35/122 (28%), Positives = 45/122 (36%), Gaps = 25/122 (20%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGD 63
RG +RG A+P + S P A + P P + RP + + H
Sbjct: 39 RGVRRGVSPVAQADPAQDASSFSYSTPVQTA--TNPGPRHLRPE-------TSSSKQHFR 89
Query: 64 ARALRYYSPP-----PTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCWLLEHRGRLE 118
+A R SPP P NGP P G+P +PR LL HR R
Sbjct: 90 TKAPRNLSPPGRARSPRNGP-PLLVSHTGFPSPNRPRPAP----------HLLGHRLRGP 138
Query: 119 GG 120
GG
Sbjct: 139 GG 140
>gi|239750286 PREDICTED: hypothetical protein XP_002347353 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 16 AEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSL-DAQRQYHGDARALRYYSPPP 74
A R + PR PSLP A G P P+ G + + R+ G AR + SP
Sbjct: 5 ATERRRRPRAGPSLPRGAARGKGALPAAASPTSRGSSNFPPSARRRTGRARFRNFVSPRV 64
Query: 75 TNGP 78
GP
Sbjct: 65 ALGP 68
>gi|239744595 PREDICTED: hypothetical protein XP_002343205 [Homo
sapiens]
Length = 221
Score = 31.2 bits (69), Expect = 1.7
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 16 AEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSL-DAQRQYHGDARALRYYSPPP 74
A R + PR PSLP A G P P+ G + + R+ G AR + SP
Sbjct: 5 ATERRRRPRAGPSLPRGAARGKGALPAAASPTSRGSSNFPPSARRRTGRARFRNFVSPRV 64
Query: 75 TNGP 78
GP
Sbjct: 65 ALGP 68
>gi|239755784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 16 AEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSL-DAQRQYHGDARALRYYSPPP 74
A R + PR PSLP A G P P+ G + + R+ G AR + SP
Sbjct: 5 ATERRRRPRAGPSLPRGAARGKGALPAAASPTSRGSSNFPPSARRRTGRARFRNFVSPCV 64
Query: 75 TNGP 78
GP
Sbjct: 65 ALGP 68
>gi|156104872 Ets2 repressor factor [Homo sapiens]
Length = 548
Score = 30.8 bits (68), Expect = 2.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 13 TEVAEPRNKLPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGDARALRYYSP 72
+E+ EP + PR P P D + GP P R P + G F + + + G L +
Sbjct: 194 SELEEPLGEDPRARPPGPPDLGAFRGP-PLARLPHDPGVFRVYPRPR--GGPEPLSPFPV 250
Query: 73 PPTNGPG 79
P GPG
Sbjct: 251 SPLAGPG 257
>gi|5729862 stem-loop (histone) binding protein [Homo sapiens]
Length = 270
Score = 30.0 bits (66), Expect = 3.8
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 42 FYRRPSELGCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQE 101
F+ P+E GC D Q + D + S P T+ +FD+ G P + + D +V++
Sbjct: 196 FWDPPAEEGC---DLQEIHPVDLESAESSSEPQTSSQD-DFDVYSGTPTKVRHMDSQVED 251
Query: 102 RLDHLLC 108
D C
Sbjct: 252 EFDLEAC 258
>gi|27764882 leprecan-like 1 isoform a [Homo sapiens]
Length = 708
Score = 29.6 bits (65), Expect = 5.0
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 18 PRNKLP-RPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGDAR----------A 66
PR +L P P P D SG +Y E L+A + H R A
Sbjct: 30 PRRELELEPGPLQPFDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCA 89
Query: 67 LRYYSPPPTNGPGPNFDL 84
R+ PPP G GP +L
Sbjct: 90 ARHPLPPPPPGEGPGAEL 107
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 29.6 bits (65), Expect = 5.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 22 LPRPAPSLPTDPALYSGPFPFYRRPSELGCFSLDAQRQYHGDARALRYYS---------- 71
L RP P L ++P G R + +L ++ G ARALRY+
Sbjct: 536 LLRPRPGLDSEPG---GAEAGKARHAGAVIRTLSGMARHQGPARALRYFDLTPSMAGIMV 592
Query: 72 PPPTNGPGPNF 82
PP PGP F
Sbjct: 593 PPVQRWPGPGF 603
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 29.3 bits (64), Expect = 6.5
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAPSLPTDPAL---YSGPFPFYRRPSELGCFSLDAQRQY 60
RG R V E +K + A S P P++ Y P+ + RRP S D +
Sbjct: 225 RGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAK 284
Query: 61 HGDARALRYYSPPPTNGPGP 80
G+A PT P P
Sbjct: 285 AGEA---------PTENPAP 295
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 29.3 bits (64), Expect = 6.5
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAPSLPTDPAL---YSGPFPFYRRPSELGCFSLDAQRQY 60
RG R V E +K + A S P P++ Y P+ + RRP S D +
Sbjct: 294 RGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAK 353
Query: 61 HGDARALRYYSPPPTNGPGP 80
G+A PT P P
Sbjct: 354 AGEA---------PTENPAP 364
>gi|30425410 R3H domain containing-like [Homo sapiens]
Length = 253
Score = 29.3 bits (64), Expect = 6.5
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 20 NKLPRPAPSLPTDPALYSG-PFPFYRRPSELGCFSLDAQRQYHGDARALRYYSPPPTN 76
N P PA T L SG P YRR + ++A YH RA Y PP N
Sbjct: 28 NATPAPAQPESTAMRLLSGLEVPRYRRKRHISVRDMNALLDYHNHIRASVY--PPAAN 83
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.9 bits (63), Expect = 8.5
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 10/89 (11%)
Query: 15 VAEPRNKLPRPAPSLPTDPALYSG---------PFPFYRRPSELGCFSLDAQRQYHGDAR 65
V++ R P P+P++ T P SG P P Y P G + + + H A
Sbjct: 574 VSKSRASPPGPSPAVTTGPRTLSGVSWPSERLLPSPCY-HPLCSGGLASPSSSESHPYAS 632
Query: 66 ALRYYSPPPTNGPGPNFDLRDGYPDRYQP 94
+P P GPGP PD +P
Sbjct: 633 LDSSRAPSPQPGPGPICPDSPPSPDPTRP 661
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 28.9 bits (63), Expect = 8.5
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 38/157 (24%)
Query: 3 PRGTKRGAEKTEVAEPRNKLPRP-------------APSLPTDPALYSGPFPFYRRPSEL 49
P G R PR K PR A + P P + GP RRP L
Sbjct: 89 PAGCCRANAPAPARNPRRKEPRRQSRATGKSARTRRACASPCRPGRHCGP-ETARRPRPL 147
Query: 50 GCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCW 109
A + G AR L S PP +G G + P R + + + L
Sbjct: 148 ------AGTTFCGGARVL---SNPPPSGSGGDARPSPLVPRRCRATSASLPQETPFALSV 198
Query: 110 LL--------EHRGRLEGGP-------GWLAEAIVTW 131
+ + RGR G P GWLA A+ +W
Sbjct: 199 VWAPRRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSW 235
>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 28.9 bits (63), Expect = 8.5
Identities = 41/157 (26%), Positives = 53/157 (33%), Gaps = 38/157 (24%)
Query: 3 PRGTKRGAEKTEVAEPRNKLPRP-------------APSLPTDPALYSGPFPFYRRPSEL 49
P G R PR K PR A + P P + GP RRP L
Sbjct: 89 PAGCCRANAPAPARNPRRKEPRRQSRATGKSARTRRACASPCRPGRHCGP-ETARRPRPL 147
Query: 50 GCFSLDAQRQYHGDARALRYYSPPPTNGPGPNFDLRDGYPDRYQPRDEEVQERLDHLLCW 109
A + G AR L S PP +G G + P R + + + L
Sbjct: 148 ------AGTTFCGGARVL---SNPPPSGSGGDARPSPLVPRRCRATSASLPQETPFALSV 198
Query: 110 LL--------EHRGRLEGGP-------GWLAEAIVTW 131
+ + RGR G P GWLA A+ +W
Sbjct: 199 VWAPRRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSW 235
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 28.9 bits (63), Expect = 8.5
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 4 RGTKRGAEKTEVAEPRNKLPRPAP---SLPTDPALYSG----PFPF---YRRPSELGCFS 53
R K ++ + R +P P P +L P+L P P + P E+ +
Sbjct: 1693 RSLKSPKKRATGLQRRRLIPAPLPDTTALGRKPSLPGQWVDLPPPLAGSLKEPFEIKVYE 1752
Query: 54 LDAQRQYHGDARALRYYSPPPTNGPGPNF---DLRDGYPDRYQPRDEEVQERLDHLLCWL 110
+D D L+ P P P R +R Q R EVQ + HL L
Sbjct: 1753 ID-------DVERLQRPRPTPREAPTQGLACVSTRLRLAERRQQRLREVQAKHKHLCEEL 1805
Query: 111 LEHRGRLEGGPG-WLAE 126
E +GRL PG WL +
Sbjct: 1806 AETQGRLMLEPGRWLEQ 1822
>gi|68800032 tetraspanin 4 isoform b [Homo sapiens]
Length = 174
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 102 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 141
>gi|68800005 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
>gi|4507543 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
>gi|68800018 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
>gi|68800024 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
>gi|68800011 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
>gi|68799997 tetraspanin 4 isoform a [Homo sapiens]
Length = 238
Score = 28.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 247 PPTCYVELKTSKEMHSPGQWRSFYRHKLLKWWAQSFLPGV 286
P +C +E S +H+PG W ++ +K W Q L V
Sbjct: 166 PDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLAV 205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,571,669
Number of Sequences: 37866
Number of extensions: 1149086
Number of successful extensions: 3103
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3093
Number of HSP's gapped (non-prelim): 28
length of query: 396
length of database: 18,247,518
effective HSP length: 104
effective length of query: 292
effective length of database: 14,309,454
effective search space: 4178360568
effective search space used: 4178360568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.