Guide to the Human Genome
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Name: HSP90AB1 Sequence: fasta or formatted (724aa) NCBI GI: 20149594
Description:

heat shock 90kDa protein 1, beta

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         38           2
 C cysteine            0.8          6           2
 D aspartate           7.0         51           2
 E glutamate          13.3         96           3
 F phenylalanine       3.6         26           1
 G glycine             4.7         34           2
 H histidine           1.8         13           2
 I isoleucine          6.6         48           2
 K lysine             10.4         75           4
 L leucine             8.6         62           2
 M methionine          2.6         19           2
 N asparagine          3.9         28           2
 P proline             3.2         23           2
 Q glutamine           2.9         21           2
 R arginine            4.4         32           3
 S serine              6.6         48           2
 T threonine           4.7         34           1
 V valine              5.8         42           3
 W tryptophan          0.6          4           1
 Y tyrosine            3.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 90kDa protein 1, beta 
HSP90AA1              0.881   heat shock 90kDa protein 1, alpha isoform 2 
HSP90AA1              0.881   heat shock 90kDa protein 1, alpha isoform 1 
HSP90B1               0.450   heat shock protein 90kDa beta, member 1 
TRAP1                 0.122   TNF receptor-associated protein 1 
RNF20                 0.021   ring finger protein 20 
WDR87                 0.018   NYD-SP11 protein 
LOC728792             0.017   PREDICTED: hypothetical protein 
MYH10                 0.017   myosin, heavy polypeptide 10, non-muscle 
SUPT5H                0.017   suppressor of Ty 5 homolog isoform b 
CCAR1                 0.017   cell-cycle and apoptosis regulatory protein 1 
LOC440243             0.016   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC100294088          0.016   PREDICTED: hypothetical protein, partial 
USP35                 0.016   ubiquitin specific protease 35 
ATRX                  0.016   transcriptional regulator ATRX isoform 2 
ATRX                  0.016   transcriptional regulator ATRX isoform 1 
KIF21A                0.016   kinesin family member 21A 
MYT1L                 0.016   myelin transcription factor 1-like 
LOC727832             0.015   golgi autoantigen, golgin subfamily a-like 
RGAG4                 0.015   retrotransposon gag domain containing 4 
EHMT2                 0.015   euchromatic histone-lysine N-methyltransferase 2 is...
MYT1                  0.014   myelin transcription factor 1 
SUPT5H                0.014   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.014   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.014   suppressor of Ty 5 homolog isoform a 
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.014   splicing factor, arginine/serine-rich 12 isoform b [...
LOC645202             0.014   PREDICTED: hypothetical protein LOC645202 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
SMARCA2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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