Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CDS2 Sequence: fasta or formatted (445aa) NCBI GI: 20143480
Description:

phosphatidate cytidylyltransferase 2

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         19           1
 C cysteine            2.2         10           1
 D aspartate           3.8         17           2
 E glutamate           4.7         21           2
 F phenylalanine       9.4         42           3
 G glycine             5.8         26           2
 H histidine           2.7         12           1
 I isoleucine          8.3         37           3
 K lysine              3.6         16           2
 L leucine             9.4         42           3
 M methionine          3.4         15           1
 N asparagine          3.4         15           2
 P proline             4.7         21           2
 Q glutamine           2.9         13           2
 R arginine            4.5         20           1
 S serine              7.0         31           2
 T threonine           6.1         27           2
 V valine              7.2         32           2
 W tryptophan          2.0          9           2
 Y tyrosine            4.5         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidate cytidylyltransferase 2 
CDS1                  0.729   CDP-diacylglycerol synthase 1 
NIACR2                0.015   G protein-coupled receptor 109B 
NIACR1                0.015   G protein-coupled receptor 109A 
ELOVL4                0.012   elongation of very long chain fatty acids-like 4 [Ho...
OBSCN                 0.008   obscurin, cytoskeletal calmodulin and titin-interac...
AFF1                  0.008   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
SLC17A1               0.007   solute carrier family 17 (sodium phosphate), member...
PRKCSH                0.006   protein kinase C substrate 80K-H isoform 1 
LOC100131203          0.006   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.006   PREDICTED: similar to serine/threonine-protein kina...
TECPR2                0.006   tectonin beta-propeller repeat containing 2 
PROM1                 0.004   prominin 1 isoform 2 
SLC44A2               0.004   solute carrier family 44, member 2 isoform 1 
SLC44A2               0.004   solute carrier family 44, member 2 isoform 2 
PROM1                 0.004   prominin 1 isoform 4 
PROM1                 0.004   prominin 1 isoform 5 
PROM1                 0.004   prominin 1 isoform 6 
PROM1                 0.004   prominin 1 isoform 7 
PROM1                 0.004   prominin 1 isoform 2 
PROM1                 0.004   prominin 1 isoform 1 
R3HCC1                0.004   R3H domain and coiled-coil containing 1 
ZDHHC20               0.004   zinc finger, DHHC-type containing 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press