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Search of human proteins with 20127561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20127561 NADH dehydrogenase (ubiquinone) 1 beta subcomplex,
11, 17.3kDa isoform 1 [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20127561 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1... 342 1e-94
gi|209862760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, ... 307 2e-84
gi|27734719 solute carrier family 19, member 2 [Homo sapiens] 32 0.24
gi|54112394 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.24
gi|54112392 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.24
gi|54112390 calcium channel, voltage-dependent, alpha 2/delta su... 32 0.32
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 30 0.92
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 30 0.92
gi|58761508 midnolin [Homo sapiens] 30 0.92
gi|149944548 neurobeachin-like 2 [Homo sapiens] 30 1.2
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ... 30 1.2
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s... 30 1.2
gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens] 29 2.1
gi|148806928 hypothetical protein LOC57482 [Homo sapiens] 28 2.7
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 28 2.7
gi|189303549 speedy homolog E4 [Homo sapiens] 28 3.5
gi|18426913 drebrin 1 isoform b [Homo sapiens] 28 3.5
gi|18426915 drebrin 1 isoform a [Homo sapiens] 28 3.5
gi|4502873 chloride channel 6 isoform ClC-6a [Homo sapiens] 28 3.5
gi|12025673 chloride channel 6 isoform ClC-6d [Homo sapiens] 28 3.5
gi|12025668 chloride channel 6 isoform ClC-6b [Homo sapiens] 28 3.5
gi|12025671 chloride channel 6 isoform ClC-6c [Homo sapiens] 28 3.5
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 28 3.5
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 28 3.5
gi|38505159 transcription factor-like 5 protein [Homo sapiens] 28 3.5
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 28 3.5
gi|4506455 reticulocalbin 1 precursor [Homo sapiens] 28 4.6
gi|223972653 aldehyde dehydrogenase 16 family, member A1 isoform... 27 6.0
gi|223972651 aldehyde dehydrogenase 16 family, member A1 isoform... 27 6.0
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 27 6.0
>gi|20127561 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11,
17.3kDa isoform 1 [Homo sapiens]
Length = 163
Score = 342 bits (876), Expect = 1e-94
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE
Sbjct: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
Query: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRA 120
PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRA
Sbjct: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRA 120
Query: 121 WDGMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 163
WDGMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE
Sbjct: 121 WDGMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 163
>gi|209862760 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11,
17.3kDa isoform 2 [Homo sapiens]
Length = 153
Score = 307 bits (787), Expect = 2e-84
Identities = 153/163 (93%), Positives = 153/163 (93%), Gaps = 10/163 (6%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE
Sbjct: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE 60
Query: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYRCTGCPRA 120
PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR
Sbjct: 61 PEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR------- 113
Query: 121 WDGMKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 163
MKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE
Sbjct: 114 ---MKEWSRREAERLVKYREANGLPIMESNCFDPSKIQLPEDE 153
>gi|27734719 solute carrier family 19, member 2 [Homo sapiens]
Length = 497
Score = 32.0 bits (71), Expect = 0.24
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 7 GLSARRLLAAAATRGLPAARVRWESSFSRTVV--APSAVAGKRPPEP-TTPWQEDPEPED 63
G +RR AAAAT L ARVR E F T + A A RP EP TP+ P D
Sbjct: 5 GPVSRRAAAAAATVLLRTARVRRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGP---D 61
Query: 64 ENLYEKNPDSHGYDKDPVLDVWNMR-LVFFFGVSIILVLGSTFVAYLP 110
+NL E+ + Y VW LV F V L + ++ Y P
Sbjct: 62 KNLTEREVFNEIY------PVWTYSYLVLLFPV----FLATDYLRYKP 99
>gi|54112394 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform b [Homo sapiens]
Length = 1143
Score = 32.0 bits (71), Expect = 0.24
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 PPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
P + W E+PEP + + Y ++ D+HGY
Sbjct: 764 PNKAAEDWTENPEPFNASFYRRSLDNHGY 792
>gi|54112392 calcium channel, voltage-dependent, alpha 2/delta
subunit 2 isoform a [Homo sapiens]
Length = 1145
Score = 32.0 bits (71), Expect = 0.24
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 48 PPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
P + W E+PEP + + Y ++ D+HGY
Sbjct: 764 PNKAAEDWTENPEPFNASFYRRSLDNHGY 792
>gi|54112390 calcium channel, voltage-dependent, alpha 2/delta
subunit 1 [Homo sapiens]
Length = 1091
Score = 31.6 bits (70), Expect = 0.32
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 34 SRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHGY 76
+R VV + P E WQE+PE +++ Y+++ D+ Y
Sbjct: 719 ARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNY 761
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 30.0 bits (66), Expect = 0.92
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 109 LPDYRCTGCPRAWDG 123
L DYRCT CPR ++G
Sbjct: 1489 LDDYRCTACPRGYEG 1503
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 30.0 bits (66), Expect = 0.92
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 109 LPDYRCTGCPRAWDG 123
L DYRCT CPR ++G
Sbjct: 1489 LDDYRCTACPRGYEG 1503
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 30.0 bits (66), Expect = 0.92
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 1 MAAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPS---AVAGKRPPEPTTPWQE 57
+AA L R +LAAAA AA R + S + V +P + A + PP PT+P
Sbjct: 156 LAAQHAPLQHRHVLAAAAA----AAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPA 211
Query: 58 DPEP 61
P P
Sbjct: 212 SPSP 215
>gi|149944548 neurobeachin-like 2 [Homo sapiens]
Length = 2754
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 22 LPAARVRWESSFSRTVVAPSAVAGKRPP----EPTTPWQEDPEPEDEN 65
L A + W+ +R V +A AG PP PT+P P+P E+
Sbjct: 1277 LLARQAGWQDVLTRLYVLEAATAGSPPPSSPESPTSPKPAPPKPPTES 1324
>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
sapiens]
Length = 706
Score = 29.6 bits (65), Expect = 1.2
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 3 AGLFGLSARRLLAA----AATRGLPAA----RVRWESSFSRTVVAPSAVAGKRPPE---- 50
AGL G SA LLA AA L AA R E+ SR APS A PPE
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKEDRAGVEAEGSRVERAPSRSASPSPPESLVE 216
Query: 51 ---PTTPW----QEDPEPEDENLYEKNPDSHGYD 77
P+ P Q E E YE + D Y+
Sbjct: 217 EERPSGPGGGGKQRADEKEPSGPYESDEDKSDYN 250
>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
sapiens]
Length = 743
Score = 29.6 bits (65), Expect = 1.2
Identities = 34/94 (36%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 3 AGLFGLSARRLLAA----AATRGLPAA----RVRWESSFSRTVVAPSAVAGKRPPE---- 50
AGL G SA LLA AA L AA R E+ SR APS A PPE
Sbjct: 143 AGLVGGSATGLLALSGALAAQAQLAAAVKEDRAGVEAEGSRVERAPSRSASPSPPESLVE 202
Query: 51 ---PTTPW----QEDPEPEDENLYEKNPDSHGYD 77
P+ P Q E E YE + D Y+
Sbjct: 203 EERPSGPGGGGKQRADEKEPSGPYESDEDKSDYN 236
>gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]
Length = 4024
Score = 28.9 bits (63), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 75 GYDKDPVLDVWNMRLVFFFGVSIILVLGSTFVAYLPDYR 113
G + DP+L+ ++ F G S + LG + + Y PD+R
Sbjct: 3040 GEELDPILEPLLLKQTFKQGGSTCIRLGDSTIEYAPDFR 3078
>gi|148806928 hypothetical protein LOC57482 [Homo sapiens]
Length = 1233
Score = 28.5 bits (62), Expect = 2.7
Identities = 21/62 (33%), Positives = 27/62 (43%)
Query: 2 AAGLFGLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEP 61
AA L+ + LA T P A + S V S AG+ PEP+ P +ED E
Sbjct: 951 AANKMPLAQKPALAPKPTSQTPPASPLSKLSRPYLVELLSRRAGRPDPEPSEPSKEDQES 1010
Query: 62 ED 63
D
Sbjct: 1011 SD 1012
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 28.5 bits (62), Expect = 2.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 27 VRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDSHG 75
++W S+F R + S V + P P Q P E + L K PD G
Sbjct: 572 LKWHSAFFRKQMGTSLVHSLKKPHKRDPLQNSPGSEGKTLL-KQPDLCG 619
>gi|189303549 speedy homolog E4 [Homo sapiens]
Length = 237
Score = 28.1 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 34 SRTVVAPSAVAGKRPPEPTTPWQEDPEPEDENL 66
S TV +P V P P+ PW DP P+ ++L
Sbjct: 18 STTVRSPEVVVDDEVPGPSAPW-IDPSPQPQSL 49
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 APSAVAGKRPPE-PTTPWQEDPEPEDENLYE 68
AP V +PPE T W DP PE+E +E
Sbjct: 618 APPPVFYNKPPEIDITCWDADPVPEEEEGFE 648
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 39 APSAVAGKRPPE-PTTPWQEDPEPEDENLYE 68
AP V +PPE T W DP PE+E +E
Sbjct: 616 APPPVFYNKPPEIDITCWDADPVPEEEEGFE 646
>gi|4502873 chloride channel 6 isoform ClC-6a [Homo sapiens]
Length = 869
Score = 28.1 bits (61), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025673 chloride channel 6 isoform ClC-6d [Homo sapiens]
Length = 308
Score = 28.1 bits (61), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025668 chloride channel 6 isoform ClC-6b [Homo sapiens]
Length = 320
Score = 28.1 bits (61), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|12025671 chloride channel 6 isoform ClC-6c [Homo sapiens]
Length = 353
Score = 28.1 bits (61), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 47 RPPEPTTPWQEDPEPEDENLYEKNPDSHGYDK---DPVLDV 84
R PE T E E EDE L K+ +S YD+ DP L+V
Sbjct: 24 RTPEELTILGETQEEEDEILPRKDYESLDYDRCINDPYLEV 64
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 28.1 bits (61), Expect = 3.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 12 RLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPEP 61
R+ A+ RG P AR S +++ ++ PP+ T +E+P P
Sbjct: 405 RMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRP 454
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 28.1 bits (61), Expect = 3.5
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 39 APSAVAGKRPPEPTTPWQ-EDPEPEDENLYEKNPDSHGYDKDPVLDVWNMRLVFFFGVSI 97
+PS+ PEP P P +NL +P+ G PV W R VS
Sbjct: 636 SPSSPMASMGPEPHLPTHLSSPARPPDNL---SPEWGGEQGVPV-PPWAHRQSS--AVSS 689
Query: 98 ILVLGSTFVAYLPDYRCTGCPRAWDGM 124
L LG + P+ RC+ PR W G+
Sbjct: 690 ALALGPRY----PNSRCSPAPRIWAGL 712
>gi|38505159 transcription factor-like 5 protein [Homo sapiens]
Length = 500
Score = 28.1 bits (61), Expect = 3.5
Identities = 17/37 (45%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 16 AAATRGLPAARVRWESSF-SRTVVAPSAVAGKRPPEP 51
A R PA RVR E F S P A G PPEP
Sbjct: 174 APEARAKPAVRVRLEDRFNSIPAEPPPAPRGPEPPEP 210
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 28.1 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 39 APSAVAGKRPPEPTTPWQEDPEPEDENLYEKNPDS 73
AP AV + PPEP + DP P + PD+
Sbjct: 13 APPAVVARTPPEPRPSPEGDPSPPPPPMSALVPDT 47
>gi|4506455 reticulocalbin 1 precursor [Homo sapiens]
Length = 331
Score = 27.7 bits (60), Expect = 4.6
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
Query: 7 GLSARRLLAAAATRGLPAARVRWESSFSRTVVAPSAVAGKRPPEPTTPWQEDPE----PE 62
GL +LA R P R VV P + G+RPPE +Q D E E
Sbjct: 15 GLLLALVLAPRVLRAKPTVR-------KERVVRPDSELGERPPEDNQSFQYDHEAFLGKE 67
Query: 63 DENLYEK-NPD 72
D +++ PD
Sbjct: 68 DSKTFDQLTPD 78
>gi|223972653 aldehyde dehydrogenase 16 family, member A1 isoform 2
[Homo sapiens]
Length = 751
Score = 27.3 bits (59), Expect = 6.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 86 NMRLVFFFGVSIILVLGSTFVAYL------PDYRCTGCPRAWDGMKEWSRREAERLVKYR 139
+++ +++FG + GS FV + P + GCPRAWD E + E V
Sbjct: 687 DVQAMWYFGSA----QGSQFVEWASAGNLKPVWASRGCPRAWDQEAEGAGPELGLRVART 742
Query: 140 EANGLPI 146
+A LP+
Sbjct: 743 KALWLPM 749
>gi|223972651 aldehyde dehydrogenase 16 family, member A1 isoform 1
[Homo sapiens]
Length = 802
Score = 27.3 bits (59), Expect = 6.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 86 NMRLVFFFGVSIILVLGSTFVAYL------PDYRCTGCPRAWDGMKEWSRREAERLVKYR 139
+++ +++FG + GS FV + P + GCPRAWD E + E V
Sbjct: 738 DVQAMWYFGSA----QGSQFVEWASAGNLKPVWASRGCPRAWDQEAEGAGPELGLRVART 793
Query: 140 EANGLPI 146
+A LP+
Sbjct: 794 KALWLPM 800
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 27.3 bits (59), Expect = 6.0
Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 31 SSFSRTVVAPSA-----VAGKRPPEPTTPWQEDPEP 61
SSFS VV P A K P PT W D EP
Sbjct: 472 SSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEP 507
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,535,336
Number of Sequences: 37866
Number of extensions: 383218
Number of successful extensions: 1781
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1759
Number of HSP's gapped (non-prelim): 52
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.