Search of human proteins with 20070191

Search of human proteins with 20070191

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20070191 thymic dendritic cell-derived factor 1 [Homo
sapiens]
         (323 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20070191 thymic dendritic cell-derived factor 1 [Homo sapiens]     657   0.0  
gi|6912274 brain-specific membrane-anchored protein precursor [H...   156   2e-38
gi|239755070 PREDICTED: similar to proprotein convertase subtili...    32   0.58 
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ...    32   0.58 
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ...    32   0.58 
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]                     32   1.00 
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]                     32   1.00 
gi|154146216 pleckstrin homology domain containing, family A (ph...    32   1.00 
gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens]                    30   2.9  
gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]                     30   2.9  
gi|4503861 gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...    30   2.9  
gi|64085252 hypothetical protein LOC145508 [Homo sapiens]              30   3.8  
gi|21389403 folliculin isoform 2 [Homo sapiens]                        29   4.9  
gi|22907034 folliculin isoform 1 [Homo sapiens]                        29   4.9  
gi|47717139 leucine-zipper-like transcription regulator 1 [Homo ...    28   8.4  

>gi|20070191 thymic dendritic cell-derived factor 1 [Homo sapiens]
          Length = 323

 Score =  657 bits (1694), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT 60
           MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT
Sbjct: 1   MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT 60

Query: 61  YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ 120
           YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ
Sbjct: 61  YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ 120

Query: 121 LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF 180
           LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF
Sbjct: 121 LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF 180

Query: 181 QSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMRNSQAHRNFLEDGESDGFLRCLSLNSGW 240
           QSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMRNSQAHRNFLEDGESDGFLRCLSLNSGW
Sbjct: 181 QSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMRNSQAHRNFLEDGESDGFLRCLSLNSGW 240

Query: 241 ILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVVR 300
           ILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVVR
Sbjct: 241 ILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVVR 300

Query: 301 SKTEDHEEAGPLPTKVNLAHSEI 323
           SKTEDHEEAGPLPTKVNLAHSEI
Sbjct: 301 SKTEDHEEAGPLPTKVNLAHSEI 323


>gi|6912274 brain-specific membrane-anchored protein precursor [Homo
           sapiens]
          Length = 342

 Score =  156 bits (395), Expect = 2e-38
 Identities = 104/319 (32%), Positives = 160/319 (50%), Gaps = 41/319 (12%)

Query: 16  LPPLLLLTMALAG---GSGTASAEAFDSVLGDTASCHRACQLTYPLHTYPKEEELY---- 68
           +PP LLL + LA     S  ++ + F   LGDT +C   C+    L   P +  L     
Sbjct: 7   MPPPLLLLLLLASPPAASAPSARDPFAPQLGDTQNCQLRCR-DRDLGPQPSQAGLEGASE 65

Query: 69  ----------ACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQ 118
                     AC+RGCRLFSIC+FV      N T+ ECE+AC EAY +  EQ AC  GC 
Sbjct: 66  SPYDRAVLISACERGCRLFSICRFVARSSKPNATQTECEAACVEAYVKEAEQQACSHGCW 125

Query: 119 NQLPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIV 178
           +Q    E  Q++ +   P   L   L L  +  +D+++SAQ F++S+WT+YLQ D+GK+V
Sbjct: 126 SQPAEPEPEQKRKVLEAPSGALSL-LDLFSTLCNDLVNSAQGFVSSTWTYYLQTDNGKVV 184

Query: 179 IFQSKPEIQ-------------------YAPHLEQEPTNLRESSLSKMSYLQMRNSQAHR 219
           +FQ++P ++                   +   LE     +      + + ++++ S   +
Sbjct: 185 VFQTQPIVESLGFQGGRLQRVEVTWRGSHPEALEVHVDPVGPLDKVRKAKIRVKTSSKAK 244

Query: 220 NFLEDGESDGFLRCLSLNSG---WILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSI 276
              E+ + + FL C+S  SG   WIL   L LSV+V+LW+ C+T+ TA  Q++  + L++
Sbjct: 245 VESEEPQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTLVTAPGQHLKFQPLTL 304

Query: 277 YGDLEFMNEQKLNRYPASS 295
                FM E     YP  S
Sbjct: 305 EQHKGFMMEPDWPLYPPPS 323


>gi|239755070 PREDICTED: similar to proprotein convertase
           subtilisin/kexin type 5 [Homo sapiens]
          Length = 853

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 39  DSVLGDTASCHRACQLTYPLHTYPKEEELYACQRGCRL 76
           D  +G+  SCHRAC+      T P  +E  +CQ G +L
Sbjct: 115 DQEMGECESCHRACETC----TGPGHDECSSCQEGLQL 148


>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
           sapiens]
          Length = 853

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 39  DSVLGDTASCHRACQLTYPLHTYPKEEELYACQRGCRL 76
           D  +G+  SCHRAC+      T P  +E  +CQ G +L
Sbjct: 115 DQEMGECESCHRACETC----TGPGHDECSSCQEGLQL 148


>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
           sapiens]
          Length = 853

 Score = 32.3 bits (72), Expect = 0.58
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 39  DSVLGDTASCHRACQLTYPLHTYPKEEELYACQRGCRL 76
           D  +G+  SCHRAC+      T P  +E  +CQ G +L
Sbjct: 115 DQEMGECESCHRACETC----TGPGHDECSSCQEGLQL 148


>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
          Length = 1173

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 63  KEEELYACQRGCRLFSICQFVDDGIDLNRTKLECE---------SACTEAYSQ-----SD 108
           KEE+L + +   +LF +C   D   DL+R K E E         +  T  YSQ     +D
Sbjct: 479 KEEQLSSYED--KLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 536

Query: 109 EQYACHLGCQNQLPFAELRQEQLMSLMPKMHL 140
           E  +C   CQ         QE +  L  K+ L
Sbjct: 537 ENQSCCPVCQRVFQTEAELQEVISDLQSKLRL 568


>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
          Length = 1312

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 16/92 (17%)

Query: 63  KEEELYACQRGCRLFSICQFVDDGIDLNRTKLECE---------SACTEAYSQ-----SD 108
           KEE+L + +   +LF +C   D   DL+R K E E         +  T  YSQ     +D
Sbjct: 618 KEEQLSSYED--KLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLAGATAVYSQFITQLTD 675

Query: 109 EQYACHLGCQNQLPFAELRQEQLMSLMPKMHL 140
           E  +C   CQ         QE +  L  K+ L
Sbjct: 676 ENQSCCPVCQRVFQTEAELQEVISDLQSKLRL 707


>gi|154146216 pleckstrin homology domain containing, family A
           (phosphoinositide binding specific) member 2 [Homo
           sapiens]
          Length = 425

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 59  HTYPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQ 118
           HT  +  + Y    GCR  +    +  G  + +  +    +    +   D+   C+  C+
Sbjct: 176 HTILRRSQSYIPTSGCRASTGPPLIKSGYCVKQGNVR--KSWKRRFFALDDFTICYFKCE 233

Query: 119 NQLPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQAD 173
                    +E L ++  K  L     LV+S    M D+    ITSS TFY+QAD
Sbjct: 234 QD-------REPLRTIFLKDVLKTHECLVKSGDLLMRDNLFEIITSSRTFYVQAD 281


>gi|114155146 tropomyosin 3 isoform 3 [Homo sapiens]
          Length = 247

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 78  SICQFVDDGIDLNRTKLECESACTEAYSQSDEQY 111
           S C+ +D+ I L    L+C SA  E YSQ +++Y
Sbjct: 152 SRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185


>gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]
          Length = 248

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 78  SICQFVDDGIDLNRTKLECESACTEAYSQSDEQY 111
           S C+ +D+ I L    L+C SA  E YSQ +++Y
Sbjct: 152 SRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185


>gi|4503861 gamma-aminobutyric acid (GABA) A receptor, alpha 5
           precursor [Homo sapiens]
          Length = 462

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 20  LLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHTYPKEEELYACQRGCRLFSI 79
           LL TM L     T SAE     L D      AC L +  + YP  E +Y    G     +
Sbjct: 161 LLYTMRL-----TISAEC-PMQLEDFPMDAHACPLKFGSYAYPNSEVVYVWTNGSTKSVV 214

Query: 80  CQFVDDGIDLNRTKLECESACTEAYSQSDEQY 111
               +DG  LN+  L  ++  TE  S S  +Y
Sbjct: 215 --VAEDGSRLNQYHLMGQTVGTENISTSTGEY 244


>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
          Length = 1094

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)

Query: 176 KIVIFQSKPEIQYAPH--LEQEPTNL---------RESSLSKMSYLQMRNSQAHRNFLED 224
           K+ +F S P+I Y PH  L +  T L         RE+    + +  M   Q  RN  E+
Sbjct: 849 KLKVFSSGPDIHYDPHRWLAESKTKLQWLCEELKERENREKNLRHQLMLCRQQLRNLTEN 908

Query: 225 GESDGFLRCL 234
            ES+  L+CL
Sbjct: 909 KESE--LQCL 916


>gi|21389403 folliculin isoform 2 [Homo sapiens]
          Length = 342

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 154 MMDSAQSFITSSWTFYLQADDGKIVIFQSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMR 213
           MMD  + ++ +SW F L    G I   Q K    +       P   +  + +   +L  R
Sbjct: 176 MMD--RIYLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQR 233

Query: 214 NSQAHRNFLEDGESDGFLRCLSLNSGWIL 242
           N  A R+       D    CL  +  W+L
Sbjct: 234 NGNAARSLTSLTSDDNLWACLHTSFAWLL 262


>gi|22907034 folliculin isoform 1 [Homo sapiens]
          Length = 579

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 154 MMDSAQSFITSSWTFYLQADDGKIVIFQSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMR 213
           MMD  + ++ +SW F L    G I   Q K    +       P   +  + +   +L  R
Sbjct: 176 MMD--RIYLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQR 233

Query: 214 NSQAHRNFLEDGESDGFLRCLSLNSGWIL 242
           N  A R+       D    CL  +  W+L
Sbjct: 234 NGNAARSLTSLTSDDNLWACLHTSFAWLL 262


>gi|47717139 leucine-zipper-like transcription regulator 1 [Homo
           sapiens]
          Length = 840

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 74  CRLFSIC-QFVDDGIDLNRTKLECESACTEAYSQSDE 109
           CRL  +C Q+++  +DL    + CESA     SQ  E
Sbjct: 560 CRLEQLCRQYIEASVDLQNVLVVCESAARLQLSQLKE 596


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,347,094
Number of Sequences: 37866
Number of extensions: 511058
Number of successful extensions: 1302
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1286
Number of HSP's gapped (non-prelim): 21
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.