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Search of human proteins with 19923827
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923827 hypothetical protein LOC57179 isoform a [Homo
sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|119120892 hypothetical protein LOC57179 isoform a [Homo sapiens] 615 e-176
gi|19923827 hypothetical protein LOC57179 isoform a [Homo sapiens] 615 e-176
gi|119120888 hypothetical protein LOC57179 isoform b [Homo sapiens] 579 e-166
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.017
gi|155723000 mixed lineage kinase 4 [Homo sapiens] 37 0.028
gi|11386139 phospholipase C beta 3 [Homo sapiens] 36 0.037
gi|110347463 human immunodeficiency virus type I enhancer bindin... 36 0.048
gi|239742769 PREDICTED: hypothetical protein XP_002342619 [Homo ... 35 0.063
gi|157502171 sorting nexin 19 [Homo sapiens] 35 0.063
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 34 0.14
gi|225579152 insulin-like growth factor binding protein, acid la... 34 0.18
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 34 0.18
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 34 0.18
gi|222352143 TBC1 domain family, member 2 [Homo sapiens] 33 0.24
gi|239747616 PREDICTED: similar to hCG1996386 [Homo sapiens] 33 0.24
gi|169162775 PREDICTED: similar to hCG1996386 [Homo sapiens] 33 0.24
gi|83367077 mucin 16 [Homo sapiens] 33 0.31
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 33 0.31
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 33 0.31
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 33 0.41
gi|51479192 ring finger protein 1 [Homo sapiens] 33 0.41
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh... 32 0.54
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo... 32 0.54
gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 32 0.70
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 32 0.70
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.70
gi|38569484 kinesin family member 21A [Homo sapiens] 32 0.70
gi|57864582 hornerin [Homo sapiens] 32 0.91
gi|116284392 mucin 2 precursor [Homo sapiens] 32 0.91
gi|239756247 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
>gi|119120892 hypothetical protein LOC57179 isoform a [Homo sapiens]
Length = 305
Score = 615 bits (1586), Expect = e-176
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP 60
MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
Sbjct: 1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP 60
Query: 61 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH 120
ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
Sbjct: 61 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH 120
Query: 121 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP 180
FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
Sbjct: 121 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP 180
Query: 181 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA 240
HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
Sbjct: 181 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA 240
Query: 241 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL 300
TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
Sbjct: 241 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL 300
Query: 301 TPTGF 305
TPTGF
Sbjct: 301 TPTGF 305
>gi|19923827 hypothetical protein LOC57179 isoform a [Homo sapiens]
Length = 305
Score = 615 bits (1586), Expect = e-176
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP 60
MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP
Sbjct: 1 MASRQPEVPALEASAPLGKMSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIP 60
Query: 61 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH 120
ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH
Sbjct: 61 ERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQH 120
Query: 121 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP 180
FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP
Sbjct: 121 FERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTP 180
Query: 181 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA 240
HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA
Sbjct: 181 HSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA 240
Query: 241 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL 300
TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL
Sbjct: 241 TQAYRGAQKPSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL 300
Query: 301 TPTGF 305
TPTGF
Sbjct: 301 TPTGF 305
>gi|119120888 hypothetical protein LOC57179 isoform b [Homo sapiens]
Length = 286
Score = 579 bits (1493), Expect = e-166
Identities = 286/286 (100%), Positives = 286/286 (100%)
Query: 20 MSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEASLPS 79
MSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEASLPS
Sbjct: 1 MSLPIGIYRRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEASLPS 60
Query: 80 PAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLT 139
PAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLT
Sbjct: 61 PAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQAGLRDAGYTPHKGLT 120
Query: 140 TEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTA 199
TEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTA
Sbjct: 121 TEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTA 180
Query: 200 LPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQ 259
LPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQ
Sbjct: 181 LPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQ 240
Query: 260 ANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF 305
ANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF
Sbjct: 241 ANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVLTPTGF 286
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.4 bits (85), Expect = 0.017
Identities = 39/156 (25%), Positives = 55/156 (35%), Gaps = 12/156 (7%)
Query: 158 QSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDR 217
+ G T +Q + T S+ + P+G S S P P +T S G
Sbjct: 897 KEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGG-PA 955
Query: 218 NLSDKWSLFGPRSLQKYDSGSFATQAYRG------AQKPSPLELIRAQANRMAEDPAALK 271
S KW+ P + G AT + +G A PSP + + A P A+
Sbjct: 956 TPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVT 1015
Query: 272 PPK-----MDIPVMEGKKQPPRAHNLKPRDLNVLTP 302
PP P +G PP A P+ TP
Sbjct: 1016 PPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATP 1051
>gi|155723000 mixed lineage kinase 4 [Homo sapiens]
Length = 1036
Score = 36.6 bits (83), Expect = 0.028
Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 8/139 (5%)
Query: 153 HKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGS 212
HK+ +Q+ + R S+ S+P ++P P+ R TS S G N
Sbjct: 521 HKITVQASPNLDKRRSLNSSSSSPPSSPTMMPRLRAI-QLTSDESNKTWGRNTVFRQEEF 579
Query: 213 GDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLE--LIRAQ-----ANRMAE 265
D RN K +GP S+Q D + + SP LI+ Q A+ +
Sbjct: 580 EDVKRNFKKKGCTWGPNSIQMKDRTDCKERIRPLSDGNSPWSTILIKNQKTMPLASLFVD 639
Query: 266 DPAALKPPKMDIPVMEGKK 284
P + + PK+ +E +K
Sbjct: 640 QPGSCEEPKLSPDGLEHRK 658
>gi|11386139 phospholipase C beta 3 [Homo sapiens]
Length = 1234
Score = 36.2 bits (82), Expect = 0.037
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 56 KPVIPERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQ 115
K V+P +A EEG + + +S AI S ++ +A + + T+
Sbjct: 785 KVVLPTLASLRIAAFEEGGKFVGHRILPVS-AIRSGYHYVCLRNEANQPLCLPALLIYTE 843
Query: 116 ESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQST 175
S + +A P K ++ + + ++A + + + Q+G+ T ++ Q S
Sbjct: 844 ASDYIPDDHQDYAEALINPIKHVSLMDQRARQLAALIGESEAQAGQETCQDTQSQQLGSQ 903
Query: 176 PSTTPHSSP----KQRPRGWFTSGSSTALPGP 203
PS+ P SP +RP G TS +ST+L P
Sbjct: 904 PSSNPTPSPLDASPRRPPGPTTSPASTSLSSP 935
>gi|110347463 human immunodeficiency virus type I enhancer binding
protein 2 [Homo sapiens]
Length = 2446
Score = 35.8 bits (81), Expect = 0.048
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 157 LQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALP-----GPNPSTMDSG 211
LQSG + P+S+Q PS +P S P SGS LP GP+ S S
Sbjct: 1508 LQSGSSSFSSLSPSSSQDYPSVSPSSREPFLPSKEMLSGSRAPLPGQKSSGPSESKESSD 1567
Query: 212 SGDKDRNLSD 221
D D SD
Sbjct: 1568 ELDIDETASD 1577
>gi|239742769 PREDICTED: hypothetical protein XP_002342619 [Homo
sapiens]
Length = 351
Score = 35.4 bits (80), Expect = 0.063
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 158 QSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGS---STALPGPNPSTMDSGSGD 214
Q+ ++ ++ S+ +P+ S K R W SG+ A PGP + + D
Sbjct: 60 QAQSLSALRKEQDSSSEKDGRSPNKSDKDHIR-WPMSGAHDLQQAAPGPGGAHQGHPNQD 118
Query: 215 K---DRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQANR 262
+ LS++W GP +QKY+ +F + Q P ++L R QA++
Sbjct: 119 NRTVSQMLSERWYTLGPNEMQKYNL-AFQVKVAHLQQGPKEVQL-RGQAHK 167
>gi|157502171 sorting nexin 19 [Homo sapiens]
Length = 992
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 23/123 (18%)
Query: 146 LRVAEALHKLK--LQSGEVTKE-----------ERQPASAQSTPSTTPHSSPKQRPRGWF 192
L V EA K+ LQ G V E E+Q + P+ P P+Q P+G
Sbjct: 736 LSVTEAQDKILYCLQEGNVESETLSMSAMESFIEKQTKLLEMQPTKAPEKDPEQPPKGRV 795
Query: 193 TS-GSSTALPGPNPSTMDSGSGDKDRN---------LSDKWSLFGPRSLQKYDSGSFATQ 242
S S A+P +PS D G+ + + L+++W ++QK+ F T
Sbjct: 796 DSCVSDAAVPAQDPSNSDPGTETELADTALDLLLLLLTEQWKWLCTENMQKFLRLIFGTL 855
Query: 243 AYR 245
R
Sbjct: 856 VQR 858
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 34.3 bits (77), Expect = 0.14
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 149 AEALHKLKLQSGEVTKEERQPASAQSTP--------STTPHSSPKQRPR-GWFTSGSSTA 199
AEAL+ L L+ + + S P +T SS K+RPR G GS
Sbjct: 124 AEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDLGGGSRDL 183
Query: 200 LPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQAYRGAQKPSPLELIRAQ 259
P P P GD P+ L ++ +F + ++ PL L RA
Sbjct: 184 SPEPAPDEGPRRDGDP-----------APKRLASLNAAAFLKLSQ---ERELPLRLPRAH 229
Query: 260 A--NRMAEDPAALKPPKMDIPVMEGKKQP 286
A + + +P A K P+ P + GK P
Sbjct: 230 AEVDGRSTEPPAPKAPRPKWPKVNGKNYP 258
>gi|225579152 insulin-like growth factor binding protein, acid
labile subunit isoform 1 precursor [Homo sapiens]
Length = 643
Score = 33.9 bits (76), Expect = 0.18
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 180 PHSSPKQRPR-GWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGS 238
P +P++R R W+ + S AL GP P G L W GPRSL+ D G+
Sbjct: 11 PQFTPERRFRLCWYQAHSGRALLGPPPQASPPAGGLALALLLLSWVALGPRSLEGADPGT 70
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 42 PMTPPPSDMGSVP-WKPVIPERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAK 100
P PPS+ + P VI +LA ++ SLPSP S + K+K
Sbjct: 604 PSHAPPSEDAATPRTNSVISVCSSSNLAGNDDSFGSLPSPKELSSFSFSMKGHEKTAKSK 663
Query: 101 ATHVI--MNSLITKQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAE--ALHKLK 156
++ M SL K + S + GL +G +G+ E+ K L E AL+ +
Sbjct: 664 TRSLLKRMESLKLKSSHHSKHKAPSKLGLIISGPILQEGMDEEKLKQLNCVEISALNGNR 723
Query: 157 LQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPST 207
+ V K S ++ T+ SS S +S+A+ P+P T
Sbjct: 724 INVPMVRKR-----SVSNSTQTSSSSS---------QSETSSAVSTPSPVT 760
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 33.9 bits (76), Expect = 0.18
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 42 PMTPPPSDMGSVP-WKPVIPERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAK 100
P PPS+ + P VI +LA ++ SLPSP S + K+K
Sbjct: 167 PSHAPPSEDAATPRTNSVISVCSSSNLAGNDDSFGSLPSPKELSSFSFSMKGHEKTAKSK 226
Query: 101 ATHVI--MNSLITKQTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAE--ALHKLK 156
++ M SL K + S + GL +G +G+ E+ K L E AL+ +
Sbjct: 227 TRSLLKRMESLKLKSSHHSKHKAPSKLGLIISGPILQEGMDEEKLKQLNCVEISALNGNR 286
Query: 157 LQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPST 207
+ V K S ++ T+ SS S +S+A+ P+P T
Sbjct: 287 INVPMVRKR-----SVSNSTQTSSSSS---------QSETSSAVSTPSPVT 323
>gi|222352143 TBC1 domain family, member 2 [Homo sapiens]
Length = 917
Score = 33.5 bits (75), Expect = 0.24
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 158 QSGEVTKEERQPASAQSTPSTTPHSSPKQRPR 189
QSGE +EE+ AS STP P SPK P+
Sbjct: 242 QSGEPQREEQPLASDASTPGREPEDSPKPAPK 273
>gi|239747616 PREDICTED: similar to hCG1996386 [Homo sapiens]
Length = 441
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 191 WFTSGSST---ALPGPNPSTMDSGSGDK---DRNLSDKWSLFGPRSLQKYDSGSFATQAY 244
W SGS A PGP + + D + LS++W GP +QKYD +F +
Sbjct: 92 WPMSGSHNLQQAAPGPGRAHQGHPNQDNRTISQMLSEQWYTLGPNEMQKYDL-AFQVKVA 150
Query: 245 RGAQKPSPLELIRAQANR 262
Q P ++L R QA++
Sbjct: 151 HLQQGPKEVQL-RGQAHK 167
>gi|169162775 PREDICTED: similar to hCG1996386 [Homo sapiens]
Length = 441
Score = 33.5 bits (75), Expect = 0.24
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 191 WFTSGSST---ALPGPNPSTMDSGSGDK---DRNLSDKWSLFGPRSLQKYDSGSFATQAY 244
W SGS A PGP + + D + LS++W GP +QKYD +F +
Sbjct: 92 WPMSGSHNLQQAAPGPGRAHQGHPNQDNRTISQMLSEQWYTLGPNEMQKYDL-AFQVKVA 150
Query: 245 RGAQKPSPLELIRAQANR 262
Q P ++L R QA++
Sbjct: 151 HLQQGPKEVQL-RGQAHK 167
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.1 bits (74), Expect = 0.31
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 21/194 (10%)
Query: 36 TLEDPAPMTPP-PSDMGSVPWKPVIPERKYQHLAKVEEGEASLPSPAMTLSSAID--SVD 92
TL TP S V V+ + KV+ ++ S ++S+ +D SV
Sbjct: 4755 TLPSSVAFTPQWHSTSSPVSMSSVLTSSLVKTAGKVDTSLETVTSSPQSMSNTLDDISVT 4814
Query: 93 KVPVVKAKATHVIMNSLITK--QTQESIQHFERQAGLRDAGYTPHKGLTTEETKYLRVAE 150
+ TH +N+++T T + + + + +TT + ++
Sbjct: 4815 SAATTDIETTHPSINTVVTNVGTTGSAFESHSTVSAYPEPSKVTSPNVTTSTMEDTTISR 4874
Query: 151 ALHKL----------------KLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTS 194
++ K KL+ +++E + P + + R TS
Sbjct: 4875 SIPKSSKTTRTETETTSSLTPKLRETSISQEITSSTETSTVPYKELTGATTEVSRTDVTS 4934
Query: 195 GSSTALPGPNPSTM 208
SST+ PGP+ ST+
Sbjct: 4935 SSSTSFPGPDQSTV 4948
Score = 28.5 bits (62), Expect = 7.7
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 165 EERQPASAQSTP-STTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 210
EE A+ +ST S+ P + + R S S T++PGP STM S
Sbjct: 9297 EETSSATEKSTVLSSVPTGATTEVSRTEAISSSRTSIPGPAQSTMSS 9343
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 33.1 bits (74), Expect = 0.31
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 60 PERKYQHLAKVEEGEASLPSPAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQ 119
P + + +EG + PSP MT S +S + H+ NSL+ +
Sbjct: 237 PSAHFHKCSSHQEGNFNGPSPNMTSCSVSNSQQFSSHYSFSSNHISPNSLLQSSAVLASN 296
Query: 120 HFERQAG--LRDAGYTPHKGLTTEETKYL 146
H + ++PH+G+ E T+++
Sbjct: 297 HTNQTLSDFTGSNSFSPHRGIKQESTQHI 325
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sapiens]
Length = 1189
Score = 33.1 bits (74), Expect = 0.31
Identities = 44/162 (27%), Positives = 58/162 (35%), Gaps = 29/162 (17%)
Query: 162 VTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSG---DKDRN 218
V K+ A P + P SS +P G TS S + P + S +G +
Sbjct: 985 VMKDSHASKGAPHLPRSNPGSS---QPSGAGTSNSGSGALPPYAPKLSSSAGLPLGTSTS 1041
Query: 219 LSDKWSLFGPRSLQKYDSGSFAT---------QAYRGAQK------PSPLELIRAQ---- 259
+ SL+ PR + AT Q G K PSP E I Q
Sbjct: 1042 VLSGISLYDPRDHGSSSTSELATASSGENSKNQKKSGGLKSSDKTEPSPGEAILPQKPSP 1101
Query: 260 -ANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPRDLNVL 300
E PA P+ D+P GK Q P H+L + L L
Sbjct: 1102 NVGVTLEGPA---DPQADVPRSSGKVQVPAVHSLPVQALTGL 1140
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 32.7 bits (73), Expect = 0.41
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 169 PASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKD 216
P A+ P P P RPR W + PG P T S SGD D
Sbjct: 125 PPPARPPPPPPPPPPPAPRPRAW-RGSRRRSRPGSRPQTRRSCSGDLD 171
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 32.7 bits (73), Expect = 0.41
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 168 QPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKD 216
+ S+ S P + P +PK RPRG GSS G + G+G +D
Sbjct: 184 EDVSSDSAPDSAPGPAPK-RPRGGGAGGSSVGTGGGGTGGVGGGAGSED 231
>gi|14719400 ADP-ribosylation factor binding protein 3 isoform short
[Homo sapiens]
Length = 690
Score = 32.3 bits (72), Expect = 0.54
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 14/190 (7%)
Query: 37 LEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEASL---PSPAMTLSSAIDSVDK 93
L DPAP PP G+ W + E+ G A+ +P + S+ S +
Sbjct: 366 LADPAPNVPPKESAGNSQWHLLQREQSDLDFFSPRPGTAACGASDAPLLQPSAPSSSSSQ 425
Query: 94 VPVVKAKATHVIMNSLITKQTQESIQHFERQAGLR---DAGYTPHKGLTTEETKYLRVAE 150
P+ V+ S+ S+ L + H GL + L +
Sbjct: 426 APLPPPFPAPVVPASVPAPSAGSSLFSTGVAPALAPKVEPAVPGHHGLALGNSA-LHHLD 484
Query: 151 ALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 210
AL +L L+ +VT +P ++ P+TTP RP F++G + L P S
Sbjct: 485 ALDQL-LEEAKVTSGLVKPTTSPLIPTTTP-----ARPLLPFSTGPGSPLFQP-LSFQSQ 537
Query: 211 GSGDKDRNLS 220
GS K LS
Sbjct: 538 GSPPKGPELS 547
>gi|20336267 ADP-ribosylation factor binding protein 3 isoform long
[Homo sapiens]
Length = 723
Score = 32.3 bits (72), Expect = 0.54
Identities = 47/190 (24%), Positives = 72/190 (37%), Gaps = 14/190 (7%)
Query: 37 LEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEASL---PSPAMTLSSAIDSVDK 93
L DPAP PP G+ W + E+ G A+ +P + S+ S +
Sbjct: 399 LADPAPNVPPKESAGNSQWHLLQREQSDLDFFSPRPGTAACGASDAPLLQPSAPSSSSSQ 458
Query: 94 VPVVKAKATHVIMNSLITKQTQESIQHFERQAGLR---DAGYTPHKGLTTEETKYLRVAE 150
P+ V+ S+ S+ L + H GL + L +
Sbjct: 459 APLPPPFPAPVVPASVPAPSAGSSLFSTGVAPALAPKVEPAVPGHHGLALGNSA-LHHLD 517
Query: 151 ALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 210
AL +L L+ +VT +P ++ P+TTP RP F++G + L P S
Sbjct: 518 ALDQL-LEEAKVTSGLVKPTTSPLIPTTTP-----ARPLLPFSTGPGSPLFQP-LSFQSQ 570
Query: 211 GSGDKDRNLS 220
GS K LS
Sbjct: 571 GSPPKGPELS 580
>gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo
sapiens]
Length = 616
Score = 32.0 bits (71), Expect = 0.70
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 167 RQPASAQSTPSTTPHSSPKQRPRGWFTSGS---STALPGPNPSTMDSGSGDK---DRNLS 220
++ S+ +P+ S K R W SG+ A PGP + + D + LS
Sbjct: 111 KEQDSSSEKDGRSPNKSDKDHIR-WPMSGAHDLQQAAPGPGGAHQGHPNQDNRTVSQMLS 169
Query: 221 DKWSLFGPRSLQKYD 235
++W GP +QKY+
Sbjct: 170 ERWYTLGPNEMQKYN 184
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 32.0 bits (71), Expect = 0.70
Identities = 64/287 (22%), Positives = 109/287 (37%), Gaps = 48/287 (16%)
Query: 48 SDMGSVPWKPVIPERKYQHLAKVE--------------EGEA----------SLPS---- 79
+++ + W+ R+YQ L V+ EGE SLP
Sbjct: 369 AELRNTKWEMAAQLREYQDLLNVKMALDIEIAAYRKLLEGEECRIGFGPIPFSLPEGLPK 428
Query: 80 -PAMTLSSAIDSVDKVPVVKAKATHVIMNSLITKQTQ--ESIQHFERQAGLRDAGYTPHK 136
P+++ + S +K+ VV+ ++ T++TQ E + E + + G
Sbjct: 429 IPSVSTHIKVKSEEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEG 488
Query: 137 GLTTE------ETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRG 190
G E ETK EA K V +E + PA A+S P SP + +
Sbjct: 489 GEEEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKS-PEKEEAKSPAE-VKS 546
Query: 191 WFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFA-TQAYRGAQK 249
+ S +P S ++ ++ ++ S +S K ++ S A ++ A+
Sbjct: 547 PEKAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKS 606
Query: 250 P------SPLELIRAQANRMAEDPAALK-PPKMDIPVMEGKKQPPRA 289
P SP E ++ A+ PA +K P K P E K P +A
Sbjct: 607 PVKEEAKSPAE-AKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKA 652
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 32.0 bits (71), Expect = 0.70
Identities = 49/200 (24%), Positives = 70/200 (35%), Gaps = 18/200 (9%)
Query: 28 RRAVSYDDTLEDPAPMTPPPSDMGSVPWKPVIPERKYQHLAKVEEGEAS--LPSPAMTLS 85
R A + D P TP + S P P AK + + PSPA
Sbjct: 2344 RAATLEEGNPTDEVPSTPLALEPSSTPGSKKSPPEPVDKRAKAPKARPAPPQPSPAPPAF 2403
Query: 86 SAIDSVDKVPVVKAKATHVIMNSLITKQTQESIQHFERQA------GLRDAG-------Y 132
++ + + + A AT + LIT R A G R G
Sbjct: 2404 TSCPAPEPFAELPAPATSLAPAPLITMPATRPKPKKARAAEESGAKGPRRPGEEAELLVK 2463
Query: 133 TPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWF 192
H+G+T+ ++K + EAL + +E + S S P S PK P
Sbjct: 2464 LDHEGVTSPKSK--KAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAGSSEPK-APWPKA 2520
Query: 193 TSGSSTALPGPNPSTMDSGS 212
T G PGP + DSG+
Sbjct: 2521 TDGDLAQEPGPGLTFEDSGN 2540
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 32.0 bits (71), Expect = 0.70
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 164 KEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSD 221
KE++ S S S +P SSP RPR + + N S S + D +LS+
Sbjct: 1243 KEQKHSDSGTSEASLSPPSSPPSRPRNELNVFNRLTVSQGNTSVQQDKSDESDSSLSE 1300
Score = 31.2 bits (69), Expect = 1.2
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 19/119 (15%)
Query: 193 TSGSSTALPGP----------NPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGSFATQ 242
TS +LPGP +T SG+ +++ LS L P + GS + Q
Sbjct: 1162 TSTGDASLPGPLTPVAEGQEIGMNTETSGTSAREKELSPPPGL--PSKI-----GSISRQ 1214
Query: 243 AYRGAQK-PSPLELIRAQANRMAEDPAALKPPKMDIPVMEGKKQPPRAHNLKPR-DLNV 299
+ +K P P + R +A AE A + D E PP + +PR +LNV
Sbjct: 1215 SSLSEKKIPEPSPVTRRKAYEKAEKSKAKEQKHSDSGTSEASLSPPSSPPSRPRNELNV 1273
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.6 bits (70), Expect = 0.91
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 128 RDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQR 187
+ +GYT H + + Y + +SG+ ++ ER +S+ S+ S H S ++
Sbjct: 2350 QSSGYTQHGSGSGHSSSYEQHGS-------RSGQSSRGERHGSSSGSSSSYGQHGSGSRQ 2402
Query: 188 PRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFG-----PRSLQKYDSGS 238
G GS + P+PS GSG S +S +G S Y+SGS
Sbjct: 2403 SLGHGQHGSGSG-QSPSPSRGRHGSGS---GQSSSYSPYGSGSGWSSSRGPYESGS 2454
Score = 31.2 bits (69), Expect = 1.2
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 158 QSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGS-STALPGPNPSTMDSGSGDKD 216
+SG+ ++ ERQ +SA S+ S H S ++ G GS S P P+ +SGS
Sbjct: 497 RSGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQSS 556
Query: 217 RNLSDKWSLFGPRSLQKYDSGS 238
+ S Y+SGS
Sbjct: 557 SYGPHGYGSGRSSSRGPYESGS 578
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 128 RDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQR 187
+ +GYT H + + Y + +SG+ ++ E+ +S+ S+ S H S ++
Sbjct: 940 QSSGYTQHGSGSGHSSSYEQHGS-------RSGQSSRSEQHGSSSGSSSSYGQHGSGSRQ 992
Query: 188 PRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGS 238
G GS + P+PS GSG S + S +GP Y SGS
Sbjct: 993 SLGHGQHGSGSG-QSPSPSRGRHGSG------SGQSSSYGP-----YRSGS 1031
Score = 30.8 bits (68), Expect = 1.6
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 19/111 (17%)
Query: 128 RDAGYTPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPSTTPHSSPKQR 187
+ +GYT H + + Y + +SG+ ++ E+ +S+ S+ S H S ++
Sbjct: 1880 QSSGYTQHGSGSGHSSSYEQHGS-------RSGQSSRGEQHGSSSGSSSSYGQHGSGSRQ 1932
Query: 188 PRGWFTSGSSTALPGPNPSTMDSGSGDKDRNLSDKWSLFGPRSLQKYDSGS 238
G GS + P+PS GSG S + S +GP Y SGS
Sbjct: 1933 SLGHGQHGSGSG-QSPSPSRGRHGSG------SGQSSSYGP-----YGSGS 1971
Score = 29.6 bits (65), Expect = 3.5
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 158 QSGEVTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDSGSGDKDR 217
+SG+ ++ ER +S+ S+ S H S ++ G GS + P+PS GSG
Sbjct: 1433 RSGQSSRGERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSG-QSPSPSRGRHGSGS--- 1488
Query: 218 NLSDKWSLFG-----PRSLQKYDSGS 238
S +S +G S Y+SGS
Sbjct: 1489 GQSSSYSPYGSGSGWSSSRGPYESGS 1514
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 31.6 bits (70), Expect = 0.91
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 133 TPHKGLTTEETKYLRVAEALHKLKLQSGEVTKEERQPASAQSTPS--TTPHSSPKQRPRG 190
TP TT + + S +T P + +TPS TTP S P
Sbjct: 1656 TPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSS-----PIT 1710
Query: 191 WFTSGSSTALPGPNPSTMDSGS 212
T+ SST P P P+TM + S
Sbjct: 1711 TTTTPSSTTTPSPPPTTMTTPS 1732
>gi|239756247 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 31.6 bits (70), Expect = 0.91
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 168 QPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPN----PSTMDSGS 212
QP + PS P SP Q GW T G+S ++ GP+ PS + GS
Sbjct: 35 QPHPFRKQPSPCPRQSP-QGDFGWVTPGASRSVTGPSSPAAPSLISLGS 82
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,928,015
Number of Sequences: 37866
Number of extensions: 774460
Number of successful extensions: 3549
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 3243
Number of HSP's gapped (non-prelim): 425
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.