Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 19923356
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923356 Cdc42 effector protein 3 [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923356 Cdc42 effector protein 3 [Homo sapiens] 515 e-146
gi|5802998 Cdc42 effector protein 2 [Homo sapiens] 146 1e-35
gi|13786127 Cdc42 effector protein 4 [Homo sapiens] 74 2e-13
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 65 7e-11
gi|30089966 CDC42 effector protein 5 [Homo sapiens] 45 6e-05
gi|34996489 pleckstrin homology domain interacting protein [Homo... 38 0.010
gi|4503647 coagulation factor VIII isoform a precursor [Homo sap... 37 0.022
gi|115334682 SNAP25-interacting protein [Homo sapiens] 33 0.24
gi|153945755 zinc finger protein 608 [Homo sapiens] 33 0.31
gi|19923559 EMSY protein [Homo sapiens] 32 0.53
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi... 32 0.70
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 32 0.70
gi|163644267 neutrophil cytosolic factor 4 isoform 2 [Homo sapiens] 31 0.91
gi|162287219 prune homolog 2 [Homo sapiens] 30 1.6
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 30 1.6
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 30 2.0
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 30 2.0
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 30 2.0
gi|18426913 drebrin 1 isoform b [Homo sapiens] 30 2.0
gi|18426915 drebrin 1 isoform a [Homo sapiens] 30 2.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 30 2.0
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 30 2.7
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 30 2.7
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 30 2.7
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens] 30 2.7
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens] 30 2.7
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 30 2.7
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 30 2.7
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 30 2.7
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 30 2.7
>gi|19923356 Cdc42 effector protein 3 [Homo sapiens]
Length = 254
Score = 515 bits (1326), Expect = e-146
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 61 GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML 120
GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML
Sbjct: 61 GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML 120
Query: 121 PLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQ 180
PLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQ
Sbjct: 121 PLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQ 180
Query: 181 SSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGP 240
SSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGP
Sbjct: 181 SSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGP 240
Query: 241 SLLDEVLNVMDKNK 254
SLLDEVLNVMDKNK
Sbjct: 241 SLLDEVLNVMDKNK 254
>gi|5802998 Cdc42 effector protein 2 [Homo sapiens]
Length = 210
Score = 146 bits (369), Expect = 1e-35
Identities = 103/255 (40%), Positives = 127/255 (49%), Gaps = 55/255 (21%)
Query: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 59
Query: 61 GNYELLPGNQEKA--HLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQAL 118
G + LLPG + G F +F R + + PSP+LKNAISLP IGG QAL
Sbjct: 60 GKFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQAL 119
Query: 119 MLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSA 178
LP P K PRL E + S E G+V W +
Sbjct: 120 TLPTAQ-----------APPKPPRLHLE-------TPQPSPQEGGSV----DIWRIPETG 157
Query: 179 SQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDL 238
S +S + ++ +EE SLLSL +DL
Sbjct: 158 SPNSG------------------------------LTPESGAEEPFLSNASSLLSLHVDL 187
Query: 239 GPSLLDEVLNVMDKN 253
GPS+LD+VL +MD++
Sbjct: 188 GPSILDDVLQIMDQD 202
>gi|13786127 Cdc42 effector protein 4 [Homo sapiens]
Length = 356
Score = 73.6 bits (179), Expect = 2e-13
Identities = 76/261 (29%), Positives = 114/261 (43%), Gaps = 45/261 (17%)
Query: 6 PIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQGNYEL 65
PI + ++ K + R L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 2 PILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSK--- 56
Query: 66 LPGNQEKAHLGQFPGHNEF--------FRANSTSDSVFT-ETPSPVLKNAISLPTIGGSQ 116
G + L + P + FR + S SV E + ++ +
Sbjct: 57 -AGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKN 115
Query: 117 ALMLPLLSPVTFNSKQESFGPAKLPR-LSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSS 175
A+ LP L+ K G +KLP+ LS PV +KA + GD G+
Sbjct: 116 AMSLPQLNEKEAAEK----GTSKLPKSLSSSPV--KKANDGEG---------GDEEAGTE 160
Query: 176 GSASQSSQGRDSHSSS--LSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLS 233
+ + + HS L EQ D+ D P + G +E S++S
Sbjct: 161 EAVPRRNGAAGPHSPDPLLDEQ----AFGDLTDLPVVPKATYGLKHAE--------SIMS 208
Query: 234 LQLDLGPSLLDEVLNVMDKNK 254
+DLGPS+L +VL++MDK +
Sbjct: 209 FHIDLGPSMLGDVLSIMDKEE 229
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 64.7 bits (156), Expect = 7e-11
Identities = 72/234 (30%), Positives = 99/234 (42%), Gaps = 61/234 (26%)
Query: 26 LSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL------QGNYELLPGN--QEKAHLGQ 77
L+ DMIS PLGDFRHT+H+G+ G DVFGD SFL G+ P + +K L +
Sbjct: 33 LTADMISHPLGDFRHTMHVGRGG--DVFGDTSFLSNHGGSSGSTHRSPRSFLAKKLQLVR 90
Query: 78 FPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFGP 137
G A+ + S SP++KNAISLP + Q ++
Sbjct: 91 RVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQL------------------NQAAYDS 132
Query: 138 AKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSE-QY 196
+ +LS + S +S + SS G DS ++S
Sbjct: 133 LVVGKLSFD------------------------SSPTSSTDGHSSYGLDSGFCTISRLPR 168
Query: 197 PDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGPSLLDEVLNVM 250
+ P + D P E G +S+ LS L LDLGPSLL E+L VM
Sbjct: 169 SEKPHDRDRDGSFPSE--PGLRRSDSLLS------FRLDLDLGPSLLSELLGVM 214
>gi|30089966 CDC42 effector protein 5 [Homo sapiens]
Length = 148
Score = 45.1 bits (105), Expect = 6e-05
Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 9 LKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFL 59
LK + KK R LS IS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 4 LKQLGPAQPKKRPDRGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Score = 34.3 bits (77), Expect = 0.11
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 231 LLSLQLDLGPSLLDEVLNVMD 251
LLS LDLGPS+LD VL VMD
Sbjct: 88 LLSFHLDLGPSMLDAVLGVMD 108
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 37.7 bits (86), Expect = 0.010
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 151 EKAQEKSSLLENGTVH--QGDTSWGSSGSASQSSQG--RDSHSSSLSEQYPDWPAEDMFD 206
E+ S +ENG+ +G+ S G++ + + D SS S Y DW A+ +
Sbjct: 803 EETPRPSEEIENGSSSSDEGEVVAVSGGTSEEEERAWHSDGSSSDYSSDYSDWTADAGIN 862
Query: 207 HPTPCELIKGKTKSEESLSD 226
P ++ K KTK ES SD
Sbjct: 863 LQPPKKVPKNKTKKAESSSD 882
>gi|4503647 coagulation factor VIII isoform a precursor [Homo sapiens]
Length = 2351
Score = 36.6 bits (83), Expect = 0.022
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 85 FRANSTSDSVFTETPSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQES--FGPAKLPR 142
F+ +STS+++ + PS L + G ++ PV ++S+ ++ FG P
Sbjct: 895 FKVSSTSNNLISTIPSDNLAAGTDNTSSLGPPSM------PVHYDSQLDTTLFGKKSSPL 948
Query: 143 L-SCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSS---QGRDSHSSSL 192
S P+ + S LLE+G ++ ++SWG + S+++S +G+ +H +L
Sbjct: 949 TESGGPLSLSEENNDSKLLESGLMNSQESSWGKNVSSTESGRLFKGKRAHGPAL 1002
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 33.1 bits (74), Expect = 0.24
Identities = 45/169 (26%), Positives = 65/169 (38%), Gaps = 23/169 (13%)
Query: 85 FRANSTSDSVFTETPSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFGPAKLPRLS 144
FR +S S SVF E+P ++A S T G + L P FGP +P
Sbjct: 509 FRKDSGSSSVFAESPGGKTRSAGSASTAGAPPS----ELFPGPGERSLVGFGP-PVPAKD 563
Query: 145 CEPVMEEKAQEKSSLLENGTVHQ-----------GDTSWGSSGSASQS----SQGRDSHS 189
E +A EK G V + GS+G+A+ S S GR S +
Sbjct: 564 TETRERMEAMEKQIASLTGLVQSALLRGSEPETPSEKIEGSNGAATPSAPCGSGGRSSGA 623
Query: 190 SSLSEQYPDWPAEDMFDHPTPCELIKGKTK---SEESLSDLTGSLLSLQ 235
+ +S P + PT ++ + + S SDL G L L+
Sbjct: 624 TPVSGPPPPSASSTPAGQPTAVSRLQMQLHLRGLQNSASDLRGQLQQLR 672
>gi|153945755 zinc finger protein 608 [Homo sapiens]
Length = 1512
Score = 32.7 bits (73), Expect = 0.31
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 46/211 (21%)
Query: 6 PIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQGNYEL 65
P + + KK +K KL+D + SP + G + +G +
Sbjct: 803 PALVSLKDKKKKEKRKLKDKEGKETGSPKMDA--------------KLGKLEDSKGASKD 848
Query: 66 LPGNQEKAHLGQFPG---------HNEFFRANSTSDSVFTET---PSPVLKNAISLP--T 111
LPG+ K HL + G + + +D V+T T PSP + +A L T
Sbjct: 849 LPGHFLKDHLNKNEGLANGLSESQESRMASIKAEADKVYTFTDNAPSPSIGSASRLECST 908
Query: 112 IGGSQALMLPLLSPVTFNSKQESFGPAKLPRLSC-------------EPVMEEKAQEKSS 158
+ QA M PL +T N + S P S M KA S
Sbjct: 909 LVNGQAPMAPL-HVLTQNGAESSAAKTSSPAYSDISDAADDGGSDSRSEGMRSKASSPSD 967
Query: 159 LLENGTVHQGDTSWGSSGSASQSSQGRDSHS 189
++ + + G S + +QSSQ ++SHS
Sbjct: 968 IISS----KDSVVKGHSSTTAQSSQLKESHS 994
>gi|19923559 EMSY protein [Homo sapiens]
Length = 1322
Score = 32.0 bits (71), Expect = 0.53
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 113 GGSQALMLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDT-S 171
G +Q L+ P PVTF + S +L + + SS+ E Q T S
Sbjct: 662 GKTQVLIKP--KPVTFQATVVSEQTRQLVTETLQQASRVAEAGNSSIQEGKEEPQNYTDS 719
Query: 172 WGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSL 231
SS +SQSSQ ++ + DW ++ +P + + + +S + +L
Sbjct: 720 SSSSTESSQSSQDSQPVVHVIASRRQDWSEHEIAMETSPTIIYQDVSSESQSATSTIKAL 779
Query: 232 LSLQ 235
L LQ
Sbjct: 780 LELQ 783
>gi|195976782 Paf1/RNA polymerase II complex component [Homo
sapiens]
Length = 710
Score = 31.6 bits (70), Expect = 0.70
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 153 AQEKSSLLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDM 204
+ +K S E+ +G+ S S S+S SS DS SSS E++ D ED+
Sbjct: 138 SSDKDSSAESSAPEEGEVSDSDSNSSSSSS---DSDSSSEDEEFHDGYGEDL 186
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 31.6 bits (70), Expect = 0.70
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 115 SQALMLPLLSPVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGS 174
S A + P L P+ + + S + L S + +++ +Q++ S L GTV T
Sbjct: 445 SPAALSPSLEPIRCSHQPISLLGSFLTEESPDKEIDQNSQQEESRLRKGTVSSQGTEVVF 504
Query: 175 SGSASQSSQGRDSHSSSLSEQYPDWPA 201
+ ++ + DS S +E YP PA
Sbjct: 505 ASASVTPPRTPDSAPPSPAEAYPITPA 531
>gi|163644267 neutrophil cytosolic factor 4 isoform 2 [Homo sapiens]
Length = 348
Score = 31.2 bits (69), Expect = 0.91
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 171 SWGSSGSASQSSQGRDSHSSSLSEQYPDWPAE--DMFDHPTP 210
S GS + S + SH++ S Q P WP + F HPTP
Sbjct: 278 SHGSLSHSKAPSGSQMSHNAVTSHQRPGWPGQPHSPFPHPTP 319
>gi|162287219 prune homolog 2 [Homo sapiens]
Length = 3088
Score = 30.4 bits (67), Expect = 1.6
Identities = 30/129 (23%), Positives = 47/129 (36%), Gaps = 24/129 (18%)
Query: 146 EPVMEEKAQEKSSLLE-NGTVHQGDTSWG--------------------SSGSASQSSQG 184
E E + + S +LE N +VHQ + WG + S G
Sbjct: 1841 ESPFERELSDSSGVLEINSSVHQNASPWGVPVQGDIEPVETHYTNPFSDNHQSPFLEGNG 1900
Query: 185 RDSHSS--SLSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLSLQLDLGPSL 242
++SH ++ + PD P D F + IK K E++ G L+ +
Sbjct: 1901 KNSHEQLWNIQPRQPD-PDADKFSQLVKLDQIKEKDSREQTFVSAAGDELTPETPTQEQC 1959
Query: 243 LDEVLNVMD 251
D +L V D
Sbjct: 1960 QDTMLPVCD 1968
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 30.4 bits (67), Expect = 1.6
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 61 GNYELLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALML 120
GN E+L + +F H+ FF + + F + P P+L S P + L
Sbjct: 302 GNLEVLVQSHRDGGSTEFVDHDHFFDEDLQAAIDFFKLPPPLLSPVPSPPPMSSPHPGSL 361
Query: 121 P-LLSPVTFNSK--QESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGS 177
P +P T+ + S + R S E V E+ E + + ++G +W
Sbjct: 362 PSSFAPETYFGEYTDSSDNDSVQLRNSAECVSEDDTTESQNYFGSLRKNKGSGTWEEKPK 421
Query: 178 ASQSSQ 183
+ ++ Q
Sbjct: 422 SHEAIQ 427
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 162 NGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSE 221
+ T T SS S+S SS S SSS S P + ++ P+P E +E
Sbjct: 130 SSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVE--NTPQNNE 187
Query: 222 ESLSDLTGS 230
+ DL G+
Sbjct: 188 CKMVDLRGA 196
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 162 NGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSE 221
+ T T SS S+S SS S SSS S P + ++ P+P E +E
Sbjct: 130 SSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVE--NTPQNNE 187
Query: 222 ESLSDLTGS 230
+ DL G+
Sbjct: 188 CKMVDLRGA 196
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 162 NGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGKTKSE 221
+ T T SS S+S SS S SSS S P + ++ P+P E +E
Sbjct: 130 SSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTPSPVE--NTPQNNE 187
Query: 222 ESLSDLTGS 230
+ DL G+
Sbjct: 188 CKMVDLRGA 196
>gi|18426913 drebrin 1 isoform b [Homo sapiens]
Length = 651
Score = 30.0 bits (66), Expect = 2.0
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 99 PSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFG-PAKLPRLSCEP-VMEEKAQEK 156
P P+L T+ L P P TF +E G P P+ P +EE QE+
Sbjct: 519 PEPLLPAGEGCATLLNFDELPEP---PATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQ 575
Query: 157 SS---LLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYP 197
LL NG Q + + S G SQS + + S L + P
Sbjct: 576 EPEPHLLTNGETTQKEGTQASEGYFSQSQEEEFAQSEELCAKAP 619
>gi|18426915 drebrin 1 isoform a [Homo sapiens]
Length = 649
Score = 30.0 bits (66), Expect = 2.0
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 99 PSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFG-PAKLPRLSCEP-VMEEKAQEK 156
P P+L T+ L P P TF +E G P P+ P +EE QE+
Sbjct: 517 PEPLLPAGEGCATLLNFDELPEP---PATFCDPEEVEGEPLAAPQTPTLPSALEELEQEQ 573
Query: 157 SS---LLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYP 197
LL NG Q + + S G SQS + + S L + P
Sbjct: 574 EPEPHLLTNGETTQKEGTQASEGYFSQSQEEEFAQSEELCAKAP 617
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.0 bits (66), Expect = 2.0
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 8/138 (5%)
Query: 65 LLPGNQEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQALMLPLLS 124
L P + ++ + ++S+S S + S SLP +P +
Sbjct: 2524 LQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPT 2583
Query: 125 PVTFNSKQESFGPAKLPRLSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQG 184
P + +E P EP ++ + SS + + +S SS S+S SS
Sbjct: 2584 PAPKEAVREGRPP--------EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2635
Query: 185 RDSHSSSLSEQYPDWPAE 202
S SSS S PA+
Sbjct: 2636 SSSSSSSSSSSSSPSPAK 2653
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 170 TSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTP 210
+S SS S+S SS S SSS + PD P F P P
Sbjct: 95 SSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPP 135
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 170 TSWGSSGSASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTP 210
+S SS S+S SS S SSS + PD P F P P
Sbjct: 95 SSSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAFGAPPP 135
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 29.6 bits (65), Expect = 2.7
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 129 NSKQESFGPAKLPRLSCEPVMEEKAQE---KSSLLENGTVHQGDTSWGSSGSASQSSQG 184
+S++E GPA + S +P ++ +E +S+ +E G + ++ GSS S+S+S G
Sbjct: 1700 HSEEEESGPAPVEE-STDPEAQDIPEEGSAESASVEGGVESEEESESGSSSSSSESQSG 1757
>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
Length = 2087
Score = 29.6 bits (65), Expect = 2.7
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 14/156 (8%)
Query: 43 HIGKEGQHDVFGDISF------LQGNYELLPGNQEKAHLGQFPGHNEFFRANSTS--DSV 94
H K QH V+G S L+ N + PG H + E+ + S+S ++
Sbjct: 1510 HHNKLEQHQVYGARSEPPASMGLRYNTYVAPGRNASGHHSKPCSRVEYVSSLSSSVRNTC 1569
Query: 95 FTET--PSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFGPAKL----PRLSCEPV 148
+ E P P ++ SL S +P+ + ++ P L P S +
Sbjct: 1570 YPEDIPPYPTIRRVQSLHAPPSSMIRSVPISRTEVPPDDEPAYCPRPLYQYKPYQSSQAR 1629
Query: 149 MEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQG 184
+ + ENG VH + + SS S+ S G
Sbjct: 1630 SDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPDG 1665
>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
Length = 1738
Score = 29.6 bits (65), Expect = 2.7
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 14/156 (8%)
Query: 43 HIGKEGQHDVFGDISF------LQGNYELLPGNQEKAHLGQFPGHNEFFRANSTS--DSV 94
H K QH V+G S L+ N + PG H + E+ + S+S ++
Sbjct: 1161 HHNKLEQHQVYGARSEPPASMGLRYNTYVAPGRNASGHHSKPCSRVEYVSSLSSSVRNTC 1220
Query: 95 FTET--PSPVLKNAISLPTIGGSQALMLPLLSPVTFNSKQESFGPAKL----PRLSCEPV 148
+ E P P ++ SL S +P+ + ++ P L P S +
Sbjct: 1221 YPEDIPPYPTIRRVQSLHAPPSSMIRSVPISRTEVPPDDEPAYCPRPLYQYKPYQSSQAR 1280
Query: 149 MEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQG 184
+ + ENG VH + + SS S+ S G
Sbjct: 1281 SDYHVTQLQPYFENGRVHYRYSPYSSSSSSYYSPDG 1316
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 29.6 bits (65), Expect = 2.7
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 166 HQGDTSWGSSG--------SASQSSQGRDSHSSSLSEQYPDWPAEDMFDHPTPCELIKGK 217
H G++ GS G + S+G + +++ SE+ PD D + +GK
Sbjct: 8 HAGESFLGSDGDEEATRELETEEESEGEEDETAAESEEEPDSRLSDQDE--------EGK 59
Query: 218 TKSEESLSDLTGSLLSLQ 235
K E +SD + S++++Q
Sbjct: 60 IKQEYIISDPSFSMVTVQ 77
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 29.6 bits (65), Expect = 2.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 150 EEKAQEKSSLLENGTVHQG--DTSWGSSGSASQSSQGRDSHSSSLSE 194
++ +E SSL N + H + S SGS S+S QG D S SE
Sbjct: 6 DKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSE 52
Score = 28.5 bits (62), Expect = 5.9
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 150 EEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPD 198
++K+QE+ S L + SS SAS+ + G DS S S SEQ D
Sbjct: 5 KDKSQEEDSSLHSNA---------SSHSASEEASGSDSGSQSESEQGSD 44
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 146 EPVMEEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQGRDSHSSS 191
EP E K +EK +G+ G +S S S++ S+ S+SSS
Sbjct: 494 EPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSS 539
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 29.6 bits (65), Expect = 2.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 150 EEKAQEKSSLLENGTVHQG--DTSWGSSGSASQSSQGRDSHSSSLSE 194
++ +E SSL N + H + S SGS S+S QG D S SE
Sbjct: 6 DKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSE 52
Score = 28.5 bits (62), Expect = 5.9
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 150 EEKAQEKSSLLENGTVHQGDTSWGSSGSASQSSQGRDSHSSSLSEQYPD 198
++K+QE+ S L + SS SAS+ + G DS S S SEQ D
Sbjct: 5 KDKSQEEDSSLHSNA---------SSHSASEEASGSDSGSQSESEQGSD 44
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,576,192
Number of Sequences: 37866
Number of extensions: 515662
Number of successful extensions: 1441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 102
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.