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Search of human proteins with 19923348
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923348 NGFI-A binding protein 1 [Homo sapiens]
(487 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923348 NGFI-A binding protein 1 [Homo sapiens] 969 0.0
gi|5174607 NGFI-A binding protein 2 [Homo sapiens] 323 2e-88
gi|118498362 kinectin 1 isoform b [Homo sapiens] 39 0.011
gi|118498356 kinectin 1 isoform a [Homo sapiens] 39 0.011
gi|118498368 kinectin 1 isoform c [Homo sapiens] 39 0.011
gi|33620775 kinectin 1 isoform a [Homo sapiens] 39 0.011
gi|5803145 ralA binding protein 1 [Homo sapiens] 35 0.12
gi|52856434 POTE ankyrin domain family, member G [Homo sapiens] 35 0.20
gi|224282147 prostate-specific P704P [Homo sapiens] 35 0.20
gi|219555718 synaptonemal complex central element protein 1 isof... 33 0.58
gi|239755047 PREDICTED: ankyrin repeat domain 18A [Homo sapiens] 33 0.76
gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens] 33 0.76
gi|239743724 PREDICTED: ankyrin repeat domain 18A [Homo sapiens] 33 0.76
gi|55770898 Rho GTPase activating protein 25 isoform a [Homo sap... 33 0.76
gi|7661882 Rho GTPase activating protein 25 isoform b [Homo sapi... 33 0.76
gi|93141039 nuclear respiratory factor 1 [Homo sapiens] 32 1.00
gi|93141037 nuclear respiratory factor 1 [Homo sapiens] 32 1.00
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 32 1.3
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 32 1.3
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 32 1.7
gi|209977003 ANKRD26-like family C, member 3 [Homo sapiens] 32 1.7
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens] 32 1.7
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens] 32 1.7
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens] 32 1.7
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens] 32 1.7
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens] 32 1.7
gi|19923493 pleckstrin homology domain containing, family A memb... 32 1.7
gi|122937261 coiled-coil domain containing 85A [Homo sapiens] 32 1.7
gi|56549111 optineurin [Homo sapiens] 31 2.2
gi|56549109 optineurin [Homo sapiens] 31 2.2
>gi|19923348 NGFI-A binding protein 1 [Homo sapiens]
Length = 487
Score = 969 bits (2504), Expect = 0.0
Identities = 487/487 (100%), Positives = 487/487 (100%)
Query: 1 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS 60
MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS
Sbjct: 1 MAAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMAS 60
Query: 61 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA 120
KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA
Sbjct: 61 KPLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNA 120
Query: 121 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS 180
REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS
Sbjct: 121 REPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSLSPADLGS 180
Query: 181 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND 240
PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND
Sbjct: 181 PASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMND 240
Query: 241 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL 300
DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL
Sbjct: 241 DDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAAQLCVKDNALLTRRDELFAL 300
Query: 301 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA 360
ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA
Sbjct: 301 ARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELA 360
Query: 361 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG 420
ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG
Sbjct: 361 ALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDGQG 420
Query: 421 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK 480
ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK
Sbjct: 421 ERPLNLRMPNLQNRQPHHFVVDGELSRLYPSEAKSHSSESLGILKDYPHSAFTLEKKVIK 480
Query: 481 TEPEDSR 487
TEPEDSR
Sbjct: 481 TEPEDSR 487
>gi|5174607 NGFI-A binding protein 2 [Homo sapiens]
Length = 525
Score = 323 bits (829), Expect = 2e-88
Identities = 184/362 (50%), Positives = 234/362 (64%), Gaps = 37/362 (10%)
Query: 2 AAALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASK 61
A ALPRTLGELQLYR+LQ+ANLLSY++ FIQQGGDDVQQLCEAGEEEFLEIMALVGMA+K
Sbjct: 33 AMALPRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATK 92
Query: 62 PLHVRRLQKALRDWVTNPGLFNQPLTSLPVSSIPIYKLPEGSPTWLGISCSSY----ERS 117
PLHVRRLQKALR+W TNPGLF+QP+ ++PVSSIP++K+ E + T G + + E++
Sbjct: 93 PLHVRRLQKALREWATNPGLFSQPVPAVPVSSIPLFKISETAGTRKGSMSNGHGSPGEKA 152
Query: 118 SNAREPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSVGESRLWQGHHATESEHSL-SPA 176
+AR K P LG+ S + G G+ R+W G ES+
Sbjct: 153 GSARSFSPKSP--------LELGEKLSPLPGG---PGAGDPRIWPGRSTPESDVGAGGEE 201
Query: 177 DLGSPA-SPKESS--------------------EALDAAAALSVAECVERMAPTLPKSDL 215
+ GSP SP + L+ V E VER+ + P+ D
Sbjct: 202 EAGSPPFSPPAGGGVPEGTGAGGLAAGGTGGGPDRLEPEMVRMVVESVERIFRSFPRGDA 261
Query: 216 NEVKELLKTNKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELT 275
EV LLK NKKLA+ +GHIFEM+D+D KEEEIRKYS IYGRFDSKR++GK L+LHELT
Sbjct: 262 GEVTSLLKLNKKLARSVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQLSLHELT 321
Query: 276 VNEAAAQLCVKDNALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVE 335
+NEAAAQ C++DN LL RR ELF+L+RQ++RE TY + + ++ E K++K E
Sbjct: 322 INEAAAQFCMRDNTLLLRRVELFSLSRQVARESTYLSSLKGSRLHPEELGGPPLKKLKQE 381
Query: 336 DG 337
G
Sbjct: 382 VG 383
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 38.9 bits (89), Expect = 0.011
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 186 ESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK 245
E +EAL A ++ + + ++ +L++V + + +K++ + + D K
Sbjct: 576 EQNEALKAQIQQFHSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSK 633
Query: 246 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAA--QLCVKDNALLTRRDELFALARQ 303
EEE++ + F K + K L L +AAA +L ++ + D++ L Q
Sbjct: 634 EEELKDIQNM--NFLLKAEVQK---LQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQ 688
Query: 304 ISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALS 363
+ E++ K + F D + L +++ ++L L
Sbjct: 689 LQHEISNKM-----------------------EEFKILNDQNKAL----KSEVQKLQTLV 721
Query: 364 SQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNS 416
S+QP K + +QME C Q E+L+ E L GL + +++E N + ++NS
Sbjct: 722 SEQPNKDVVEQME-KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENS 773
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 38.9 bits (89), Expect = 0.011
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 186 ESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK 245
E +EAL A ++ + + ++ +L++V + + +K++ + + D K
Sbjct: 576 EQNEALKAQIQQFHSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSK 633
Query: 246 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAA--QLCVKDNALLTRRDELFALARQ 303
EEE++ + F K + K L L +AAA +L ++ + D++ L Q
Sbjct: 634 EEELKDIQNM--NFLLKAEVQK---LQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQ 688
Query: 304 ISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALS 363
+ E++ K + F D + L +++ ++L L
Sbjct: 689 LQHEISNKM-----------------------EEFKILNDQNKAL----KSEVQKLQTLV 721
Query: 364 SQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNS 416
S+QP K + +QME C Q E+L+ E L GL + +++E N + ++NS
Sbjct: 722 SEQPNKDVVEQME-KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENS 773
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 38.9 bits (89), Expect = 0.011
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 186 ESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK 245
E +EAL A ++ + + ++ +L++V + + +K++ + + D K
Sbjct: 576 EQNEALKAQIQQFHSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSK 633
Query: 246 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAA--QLCVKDNALLTRRDELFALARQ 303
EEE++ + F K + K L L +AAA +L ++ + D++ L Q
Sbjct: 634 EEELKDIQNM--NFLLKAEVQK---LQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQ 688
Query: 304 ISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALS 363
+ E++ K + F D + L +++ ++L L
Sbjct: 689 LQHEISNKM-----------------------EEFKILNDQNKAL----KSEVQKLQTLV 721
Query: 364 SQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNS 416
S+QP K + +QME C Q E+L+ E L GL + +++E N + ++NS
Sbjct: 722 SEQPNKDVVEQME-KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENS 773
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 38.9 bits (89), Expect = 0.011
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 186 ESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHK 245
E +EAL A ++ + + ++ +L++V + + +K++ + + D K
Sbjct: 576 EQNEALKAQIQQFHSQIAAQTSASVLAEELHKV--IAEKDKQIKQTEDSLASERDRLTSK 633
Query: 246 EEEIRKYSAIYGRFDSKRKDGKHLTLHELTVNEAAA--QLCVKDNALLTRRDELFALARQ 303
EEE++ + F K + K L L +AAA +L ++ + D++ L Q
Sbjct: 634 EEELKDIQNM--NFLLKAEVQK---LQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQ 688
Query: 304 ISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALS 363
+ E++ K + F D + L +++ ++L L
Sbjct: 689 LQHEISNKM-----------------------EEFKILNDQNKAL----KSEVQKLQTLV 721
Query: 364 SQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNS 416
S+QP K + +QME C Q E+L+ E L GL + +++E N + ++NS
Sbjct: 722 SEQPNKDVVEQME-KCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENS 773
>gi|5803145 ralA binding protein 1 [Homo sapiens]
Length = 655
Score = 35.4 bits (80), Expect = 0.12
Identities = 40/213 (18%), Positives = 85/213 (39%), Gaps = 40/213 (18%)
Query: 208 PTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGK 267
PTLP++ +KE ++ + L + + D KEE + + I K ++ K
Sbjct: 389 PTLPETQAG-IKEEIRRQEFLLNCLHRDLQGGIKDLSKEERLWEVQRILTALKRKLREAK 447
Query: 268 H------------------LTLHELTVNEAAAQ-LCVKDNALLTRRDELFALARQISREV 308
++ E+ NE L ++N +LT ++EL A+ + + R++
Sbjct: 448 RQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTEQEELLAMEQFLRRQI 507
Query: 309 TYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEELAALSSQQPE 368
E++E+ R ++ + +Q+ Q R+++EE ++ S + E
Sbjct: 508 ------------ASEKEEIERLRAEIAE--------IQSRQQHGRSETEEYSSESESESE 547
Query: 369 KVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQ 401
Q+ Q E L+ L+ ++ +
Sbjct: 548 DEEELQIILEDLQRQNEELEIKNNHLNQAIHEE 580
>gi|52856434 POTE ankyrin domain family, member G [Homo sapiens]
Length = 508
Score = 34.7 bits (78), Expect = 0.20
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 300 LARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEEL 359
L+ Q +RE + + E ++ E+ P+ Q L + +S+ L
Sbjct: 336 LSGQTAREYAVSSHHNVICQLLSDYKEKQMLKVSSENSNPE-----QDLKLTSEEESQRL 390
Query: 360 AALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDG- 418
+ QPE+ M+++ E N+ G +++ E G E+ PNG T+DN D
Sbjct: 391 KGSENSQPEE-MSQEPEI--NKGGDRKVE--EEMKKHGSTHMGFPENLPNGATADNGDDG 445
Query: 419 -----QGERPLNLRMPNLQNRQPH 437
+ P + + P+ +N Q H
Sbjct: 446 LIPPRKSRTPESQQFPDTENEQYH 469
>gi|224282147 prostate-specific P704P [Homo sapiens]
Length = 508
Score = 34.7 bits (78), Expect = 0.20
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 300 LARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEEL 359
L+ Q +RE + + E ++ E+ P+ Q L + +S+ L
Sbjct: 336 LSGQTAREYAVSSRHNVICQLLSDYKEKQILKVSSENSNPE-----QDLKLTSEEESQRL 390
Query: 360 AALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDG- 418
+ QPE+ M+++ E N+ G +++ E G E+ PNG T+DN D
Sbjct: 391 KGSENSQPEE-MSQEPEI--NKGGDRKVE--EEMKKHGSTHMGFPENLPNGATADNGDDG 445
Query: 419 -----QGERPLNLRMPNLQNRQPH 437
+ P + + P+ +N Q H
Sbjct: 446 LIPPRKSRTPESQQFPDTENEQYH 469
>gi|219555718 synaptonemal complex central element protein 1 isoform
4 [Homo sapiens]
Length = 351
Score = 33.1 bits (74), Expect = 0.58
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 25/188 (13%)
Query: 246 EEEIRKYSAIYGRFDSKRKD--GKHLTLHELTVNEAAA-QLCVKDNALLTRRDELFALAR 302
EEE K + F+ + +D G+H L + + E A ++C D++ +++L
Sbjct: 145 EEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFHMPERLAKEICALDSS----KEQL----- 195
Query: 303 QISREVTYKYTYRTTK----SKCGERDELSPKRIKVEDGFPDFQDSVQT--LFQQARAKS 356
+ E K T K S CG P + E F Q++ T LFQ+ K+
Sbjct: 196 -LKEEKLVKATLEDVKHQLCSLCGAE---GPSTLD-EGLFLRSQEAAATVQLFQEEHRKA 250
Query: 357 EELAALSSQQPEKVMAK-QMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDN 415
EEL A ++Q+ +++ K Q + Q E L+ ++ A EE P + S
Sbjct: 251 EELLAAAAQRHQQLQQKCQQQQQKRQRLKEELEKHGMQVPAQAQSTQEEEAGPGDVASP- 309
Query: 416 SDGQGERP 423
+GERP
Sbjct: 310 KPLKGERP 317
>gi|239755047 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
Length = 1415
Score = 32.7 bits (73), Expect = 0.76
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 400 RQSSEEHS----PNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGE--LSRLYPSEA 453
RQ EH N L +DN + +P NL+ + + H+ V E RL SE
Sbjct: 356 RQQILEHKNKMLKNHLRNDNQETAAMKPANLKKRKERAKAEHNLKVASEEKQERLQRSEN 415
Query: 454 KS-HSSESLGILKDYPHSAFTLEKKVIKTEPE 484
K S+S G KD + F L+K + + E
Sbjct: 416 KQPQDSQSYGKKKDAMYGNFMLKKDIAMLKEE 447
>gi|239749578 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
Length = 1002
Score = 32.7 bits (73), Expect = 0.76
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 400 RQSSEEHS----PNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGE--LSRLYPSEA 453
RQ EH N L +DN + +P NL+ + + H+ V E RL SE
Sbjct: 249 RQQILEHKNKMLKNHLRNDNQETAAMKPANLKKRKERAKAEHNLKVASEEKQERLQRSEN 308
Query: 454 KS-HSSESLGILKDYPHSAFTLEKKVIKTEPE 484
K S+S G KD + F L+K + + E
Sbjct: 309 KQPQDSQSYGKKKDAMYGNFMLKKDIAMLKEE 340
>gi|239743724 PREDICTED: ankyrin repeat domain 18A [Homo sapiens]
Length = 1415
Score = 32.7 bits (73), Expect = 0.76
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 400 RQSSEEHS----PNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGE--LSRLYPSEA 453
RQ EH N L +DN + +P NL+ + + H+ V E RL SE
Sbjct: 356 RQQILEHKNKMLKNHLRNDNQETAAMKPANLKKRKERAKAEHNLKVASEEKQERLQRSEN 415
Query: 454 KS-HSSESLGILKDYPHSAFTLEKKVIKTEPE 484
K S+S G KD + F L+K + + E
Sbjct: 416 KQPQDSQSYGKKKDAMYGNFMLKKDIAMLKEE 447
>gi|55770898 Rho GTPase activating protein 25 isoform a [Homo
sapiens]
Length = 645
Score = 32.7 bits (73), Expect = 0.76
Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 14/160 (8%)
Query: 87 TSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNAREPHLKIPKCAATTCVQSLGQGKSDV 146
T+ P P PE S ++ S R L KC T+ Q K ++
Sbjct: 405 TTSPTGQQPSDAFPEDSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEI 464
Query: 147 VGSLALQSVGESRLWQGHHATESE--HSLSPADLGS--------PASPKESSEALDAAAA 196
+ E++ +GH T S+ LS + S P SP E + AL + A
Sbjct: 465 FKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQAC 524
Query: 197 LSVAECV----ERMAPTLPKSDLNEVKELLKTNKKLAKMI 232
S + + P S E+ L + ++L K I
Sbjct: 525 DSKGDTLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEI 564
>gi|7661882 Rho GTPase activating protein 25 isoform b [Homo
sapiens]
Length = 638
Score = 32.7 bits (73), Expect = 0.76
Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 14/160 (8%)
Query: 87 TSLPVSSIPIYKLPEGSPTWLGISCSSYERSSNAREPHLKIPKCAATTCVQSLGQGKSDV 146
T+ P P PE S ++ S R L KC T+ Q K ++
Sbjct: 398 TTSPTGQQPSDAFPEDSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEI 457
Query: 147 VGSLALQSVGESRLWQGHHATESE--HSLSPADLGS--------PASPKESSEALDAAAA 196
+ E++ +GH T S+ LS + S P SP E + AL + A
Sbjct: 458 FKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQAC 517
Query: 197 LSVAECV----ERMAPTLPKSDLNEVKELLKTNKKLAKMI 232
S + + P S E+ L + ++L K I
Sbjct: 518 DSKGDTLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEI 557
>gi|93141039 nuclear respiratory factor 1 [Homo sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 1.00
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 162 QGHHATESEHSLSPADLGSPASPKESS-EALDAAAALSVAECVERMAPTLPKSDLNEVKE 220
Q H AT +EHS+ AD SP+SP+++S + D + + E +A P
Sbjct: 26 QVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVG--MAAAA 83
Query: 221 LLKTNKKLAKMIGHIFEMNDDDPHKEEE--IRKYSAIYGRFDSK 262
+ T KK + H+FE N +++ +RK A + ++
Sbjct: 84 AVATGKKRKR--PHVFESNPSIRKRQQTRLLRKLRATLDEYTTR 125
>gi|93141037 nuclear respiratory factor 1 [Homo sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 1.00
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 162 QGHHATESEHSLSPADLGSPASPKESS-EALDAAAALSVAECVERMAPTLPKSDLNEVKE 220
Q H AT +EHS+ AD SP+SP+++S + D + + E +A P
Sbjct: 26 QVHVATYTEHSMLSADEDSPSSPEDTSYDDSDILNSTAADEVTAHLAAAGPVG--MAAAA 83
Query: 221 LLKTNKKLAKMIGHIFEMNDDDPHKEEE--IRKYSAIYGRFDSK 262
+ T KK + H+FE N +++ +RK A + ++
Sbjct: 84 AVATGKKRKR--PHVFESNPSIRKRQQTRLLRKLRATLDEYTTR 125
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 32.0 bits (71), Expect = 1.3
Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 20/200 (10%)
Query: 225 NKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIY-----------GRFDSKRKDGKHLTLHE 273
++ L+K + + +DDD E I K + G D + ++GK T +
Sbjct: 1209 DEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1268
Query: 274 LTVNEAAAQLCVKDNALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIK 333
N + + N+ E R R + +K T +S GE + PK K
Sbjct: 1269 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGES--GEEKKTKPKEHK 1326
Query: 334 VEDGFP----DFQDSVQTLFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQH 389
G +DS + FQ++ E + Q+P AK+ E NQ Y++
Sbjct: 1327 EVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQ--- 1383
Query: 390 AERRLSAGLYRQSSEEHSPN 409
++R + SS E+ N
Sbjct: 1384 KKKRRRIKVQEDSSSENKSN 1403
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 32.0 bits (71), Expect = 1.3
Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 20/200 (10%)
Query: 225 NKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIY-----------GRFDSKRKDGKHLTLHE 273
++ L+K + + +DDD E I K + G D + ++GK T +
Sbjct: 1247 DEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1306
Query: 274 LTVNEAAAQLCVKDNALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIK 333
N + + N+ E R R + +K T +S GE + PK K
Sbjct: 1307 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGES--GEEKKTKPKEHK 1364
Query: 334 VEDGFP----DFQDSVQTLFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQH 389
G +DS + FQ++ E + Q+P AK+ E NQ Y++
Sbjct: 1365 EVKGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQ--- 1421
Query: 390 AERRLSAGLYRQSSEEHSPN 409
++R + SS E+ N
Sbjct: 1422 KKKRRRIKVQEDSSSENKSN 1441
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 31.6 bits (70), Expect = 1.7
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 152 LQSVGESRLWQGHHATESEHSLSPADLGSPASP--KESSEALDAAAALSVAE 201
L+ S L+ G E + SP D PASP K SE+ AA A S AE
Sbjct: 2120 LEIESSSLLYSGEETHTVETATSPTDASIPASPEWKRESESTAAAPARSCAE 2171
>gi|209977003 ANKRD26-like family C, member 3 [Homo sapiens]
Length = 545
Score = 31.6 bits (70), Expect = 1.7
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 300 LARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQTLFQQARAKSEEL 359
L+ Q +RE + + E ++ E+ P+ Q L + +S+ L
Sbjct: 373 LSGQTAREYAVSSRHNVICQLLSDYKEKQILKVSSENSNPE-----QDLKLTSEEESQRL 427
Query: 360 AALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHSPNGLTSDNSDG- 418
+ QPE+ M+++ E N+ G +++ E G E+ NG T+DN D
Sbjct: 428 KGSENSQPEE-MSQEPEI--NKGGDRKVE--EEMKKHGSTHMGFPENLTNGATADNGDDG 482
Query: 419 -----QGERPLNLRMPNLQNRQPH 437
+ P + + P+ +N Q H
Sbjct: 483 LIPPRKSRTPESQQFPDTENEQYH 506
>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
Length = 439
Score = 31.6 bits (70), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 212 KSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHKEEE 248
K + E E +K NK L ++ ++ E+ D DP+ +EE
Sbjct: 70 KDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEE 106
>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
Length = 1312
Score = 31.6 bits (70), Expect = 1.7
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 234 HIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLH----ELTVNEAAAQLCV--KD 287
HI KEE +YS DS ++G+ ++ E T+ +L K
Sbjct: 305 HIDRSRKKRGEKEETEYEYSGSEEEDDSHGEEGEPSSIMNVPGESTLRREFLRLQQENKS 364
Query: 288 NALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQT 347
N+ ++ + +Q E K+ + + E+ E +R++ + Q +Q
Sbjct: 365 NSEALKQQQQLQQQQQRDPEAHIKHLLHQRQRRIEEQKE-ERRRVEEQQRREREQRKLQE 423
Query: 348 LFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHS 407
QQ R E++ AL ++ + ++ E Y+R Q E+R S L RQ +EH+
Sbjct: 424 KEQQRRL--EDMQALRREEERRQAEREQE-------YKRKQLEEQRQSERLQRQLQQEHA 474
>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
Length = 1303
Score = 31.6 bits (70), Expect = 1.7
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 234 HIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLH----ELTVNEAAAQLCV--KD 287
HI KEE +YS DS ++G+ ++ E T+ +L K
Sbjct: 305 HIDRSRKKRGEKEETEYEYSGSEEEDDSHGEEGEPSSIMNVPGESTLRREFLRLQQENKS 364
Query: 288 NALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQT 347
N+ ++ + +Q E K+ + + E+ E +R++ + Q +Q
Sbjct: 365 NSEALKQQQQLQQQQQRDPEAHIKHLLHQRQRRIEEQKE-ERRRVEEQQRREREQRKLQE 423
Query: 348 LFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHS 407
QQ R E++ AL ++ + ++ E Y+R Q E+R S L RQ +EH+
Sbjct: 424 KEQQRRL--EDMQALRREEERRQAEREQE-------YKRKQLEEQRQSERLQRQLQQEHA 474
>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
Length = 1332
Score = 31.6 bits (70), Expect = 1.7
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 234 HIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLH----ELTVNEAAAQLCV--KD 287
HI KEE +YS DS ++G+ ++ E T+ +L K
Sbjct: 305 HIDRSRKKRGEKEETEYEYSGSEEEDDSHGEEGEPSSIMNVPGESTLRREFLRLQQENKS 364
Query: 288 NALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQT 347
N+ ++ + +Q E K+ + + E+ E +R++ + Q +Q
Sbjct: 365 NSEALKQQQQLQQQQQRDPEAHIKHLLHQRQRRIEEQKE-ERRRVEEQQRREREQRKLQE 423
Query: 348 LFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHS 407
QQ R E++ AL ++ + ++ E Y+R Q E+R S L RQ +EH+
Sbjct: 424 KEQQRRL--EDMQALRREEERRQAEREQE-------YKRKQLEEQRQSERLQRQLQQEHA 474
>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
Length = 1295
Score = 31.6 bits (70), Expect = 1.7
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 16/180 (8%)
Query: 234 HIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLH----ELTVNEAAAQLCV--KD 287
HI KEE +YS DS ++G+ ++ E T+ +L K
Sbjct: 305 HIDRSRKKRGEKEETEYEYSGSEEEDDSHGEEGEPSSIMNVPGESTLRREFLRLQQENKS 364
Query: 288 NALLTRRDELFALARQISREVTYKYTYRTTKSKCGERDELSPKRIKVEDGFPDFQDSVQT 347
N+ ++ + +Q E K+ + + E+ E +R++ + Q +Q
Sbjct: 365 NSEALKQQQQLQQQQQRDPEAHIKHLLHQRQRRIEEQKE-ERRRVEEQQRREREQRKLQE 423
Query: 348 LFQQARAKSEELAALSSQQPEKVMAKQMEFLCNQAGYERLQHAERRLSAGLYRQSSEEHS 407
QQ R E++ AL ++ + ++ E Y+R Q E+R S L RQ +EH+
Sbjct: 424 KEQQRRL--EDMQALRREEERRQAEREQE-------YKRKQLEEQRQSERLQRQLQQEHA 474
>gi|19923493 pleckstrin homology domain containing, family A member
5 isoform 1 [Homo sapiens]
Length = 1116
Score = 31.6 bits (70), Expect = 1.7
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 392 RRLSAGLYRQSSEEHSPNGLTSDNSDGQGERPLNLRMPNLQNRQPHHFVVDGELSRLYPS 451
R + AGL QS S G T +G+G L +P +D +LSRL
Sbjct: 595 RSVPAGLTLQSVSPQSLQGKTLSQDEGRG---------TLYKYRPEEVDIDAKLSRLCEQ 645
Query: 452 EAKSHSSESLGILKDYPHSAFTLEKKVIKTEPE 484
+ H+ E L+ +TLE+ ++ E
Sbjct: 646 DKVVHALEEK--LQQLHKEKYTLEQALLSASQE 676
>gi|122937261 coiled-coil domain containing 85A [Homo sapiens]
Length = 553
Score = 31.6 bits (70), Expect = 1.7
Identities = 29/137 (21%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 166 ATESEHSLSPADLGSPASPKESSEALDAAAALSVAE-CVERMAPTLPKSDLNEVKELL-- 222
A + S SPA GS A+P E L + + + E + +L +++ +V +L
Sbjct: 11 AAAAAESCSPAPAGSSAAPPAPVEDLSKVSDEELLQWSKEELIRSLRRAEAEKVSAMLDH 70
Query: 223 -----KTNKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIYGRFDSKRKDGKHLTLHELTVN 277
+ N++L +G I + D + +E+ ++ + D R+ GK ++ +
Sbjct: 71 SNLIREVNRRLQLHLGEIRGLKDINQKLQEDNQELRDLCCFLDDDRQKGKRVSREWQRLG 130
Query: 278 EAAAQLCVKDNALLTRR 294
A + K+ AL ++
Sbjct: 131 RYTAGVMHKEVALYLQK 147
>gi|56549111 optineurin [Homo sapiens]
Length = 577
Score = 31.2 bits (69), Expect = 2.2
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 201 ECVERMAPTLPKSDLNEVKELLKTNKKLAKMI-GHIFEMNDDDPHKEEEIRKYSAIYGRF 259
+ +ER +P S+LNE +EL+ TNKKL + + E+ + E+E K + +
Sbjct: 335 QALERKNSAIP-SELNEKQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLTVLQMTH 393
Query: 260 DSKRKDGKHL--TLHELTVNEAAAQLCVKDNALLTRRDELFALARQ 303
+ ++ + T+ ELT E+ D A+L E LA +
Sbjct: 394 NKLLQEHNNALKTIEELTRKESEK----VDRAVLKELSEKLELAEK 435
>gi|56549109 optineurin [Homo sapiens]
Length = 577
Score = 31.2 bits (69), Expect = 2.2
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 201 ECVERMAPTLPKSDLNEVKELLKTNKKLAKMI-GHIFEMNDDDPHKEEEIRKYSAIYGRF 259
+ +ER +P S+LNE +EL+ TNKKL + + E+ + E+E K + +
Sbjct: 335 QALERKNSAIP-SELNEKQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLTVLQMTH 393
Query: 260 DSKRKDGKHL--TLHELTVNEAAAQLCVKDNALLTRRDELFALARQ 303
+ ++ + T+ ELT E+ D A+L E LA +
Sbjct: 394 NKLLQEHNNALKTIEELTRKESEK----VDRAVLKELSEKLELAEK 435
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,774,730
Number of Sequences: 37866
Number of extensions: 855325
Number of successful extensions: 2400
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 2366
Number of HSP's gapped (non-prelim): 109
length of query: 487
length of database: 18,247,518
effective HSP length: 106
effective length of query: 381
effective length of database: 14,233,722
effective search space: 5423048082
effective search space used: 5423048082
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.