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Search of human proteins with 195546889
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195546889 RAB, member RAS oncogene family-like 5 isoform b
[Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [H... 317 2e-87
gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Ho... 301 1e-82
gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [H... 222 9e-59
gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [H... 222 9e-59
gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2 [... 33 0.13
gi|122056685 peptidylarginine deiminase type I [Homo sapiens] 32 0.22
gi|169171756 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|239749140 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|169170101 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|239508844 PREDICTED: hypothetical protein [Homo sapiens] 31 0.49
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 31 0.49
gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.64
gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.64
gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.64
gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens] 30 0.64
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom... 29 1.4
gi|221316624 dystonin isoform 4 [Homo sapiens] 29 1.9
gi|221316622 dystonin isoform 3 [Homo sapiens] 29 1.9
gi|221316618 dystonin isoform 2 [Homo sapiens] 29 1.9
gi|34577047 dystonin isoform 1 [Homo sapiens] 29 1.9
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens] 29 1.9
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens] 29 1.9
gi|4502443 dystonin isoform 1e precursor [Homo sapiens] 29 1.9
gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens] 29 1.9
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens] 29 1.9
gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom... 28 3.2
gi|157738645 plexin A4 isoform 1 [Homo sapiens] 28 4.1
gi|113722116 plexin A2 [Homo sapiens] 28 4.1
gi|5032223 plexin C1 [Homo sapiens] 28 4.1
gi|239754732 PREDICTED: similar to hCG1737379 [Homo sapiens] 27 5.4
>gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [Homo
sapiens]
Length = 155
Score = 317 bits (813), Expect = 2e-87
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRFESCWPALMKDAHGVVIVFNA 60
MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRFESCWPALMKDAHGVVIVFNA
Sbjct: 1 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRFESCWPALMKDAHGVVIVFNA 60
Query: 61 DIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL 120
DIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL
Sbjct: 61 DIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL 120
Query: 121 EDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 155
EDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT
Sbjct: 121 EDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 155
>gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Homo
sapiens]
Length = 185
Score = 301 bits (772), Expect = 1e-82
Identities = 155/185 (83%), Positives = 155/185 (83%), Gaps = 30/185 (16%)
Query: 1 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR--------------------- 39
MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR
Sbjct: 1 MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 60
Query: 40 ---------FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 90
FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
Sbjct: 61 LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120
Query: 91 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
Sbjct: 121 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 180
Query: 151 MSIMT 155
MSIMT
Sbjct: 181 MSIMT 185
>gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [Homo
sapiens]
Length = 108
Score = 222 bits (566), Expect = 9e-59
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 48 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 107
MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS
Sbjct: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60
Query: 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 155
PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT
Sbjct: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108
>gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [Homo
sapiens]
Length = 108
Score = 222 bits (566), Expect = 9e-59
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 48 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 107
MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS
Sbjct: 1 MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60
Query: 108 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 155
PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT
Sbjct: 61 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108
>gi|208609964 RAB7, member RAS oncogene family-like 1 isoform 2
[Homo sapiens]
Length = 179
Score = 32.7 bits (73), Expect = 0.13
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 5 KILFVGPCESGKTVLANFLTESSDITEYSPTQG--VRFESCWPALMKDAHGVVIVF---N 59
K+L VG GKT L ++ S Y T G RF S +DA VI+F N
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGGQERFTSMTRLYYRDASACVIMFDVTN 68
Query: 60 ADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAH 92
A S+ + + + P+ + C+L+A+
Sbjct: 69 ATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 101
>gi|122056685 peptidylarginine deiminase type I [Homo sapiens]
Length = 663
Score = 32.0 bits (71), Expect = 0.22
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 50 DAHGVVIVFNADIPSHRK-EMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLSP 108
+ +G +++ N D +HR E ++ +S + LQD ML++ + P D L L+
Sbjct: 144 EGYGAILLVNCDRDNHRSAEPDLTHSWLMSLADLQDMSPMLLSCNGPDKLFDSHKLVLNV 203
Query: 109 PLNKLKLV 116
P + K V
Sbjct: 204 PFSDSKRV 211
>gi|169171756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.8 bits (68), Expect = 0.49
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 MLKAKILFVGPCESG 15
MLKAKILFVG CESG
Sbjct: 29 MLKAKILFVGLCESG 43
>gi|239749140 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.8 bits (68), Expect = 0.49
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 MLKAKILFVGPCESG 15
MLKAKILFVG CESG
Sbjct: 29 MLKAKILFVGLCESG 43
>gi|169170101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.8 bits (68), Expect = 0.49
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 MLKAKILFVGPCESG 15
MLKAKILFVG CESG
Sbjct: 29 MLKAKILFVGLCESG 43
>gi|239508844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 95
Score = 30.8 bits (68), Expect = 0.49
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 1 MLKAKILFVGPCESG 15
MLKAKILFVG CESG
Sbjct: 29 MLKAKILFVGLCESG 43
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 30.8 bits (68), Expect = 0.49
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 17 TVLANFLTESSDITEYSPTQGV-------RFESCWPALMKDAHGVVIVFNADIPSHRKEM 69
T+ A+FLT+ + + T + RF+S A + A V+VF+ P+ K +
Sbjct: 40 TIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL 99
Query: 70 EMWYSCFVQQPSLQDTQ 86
+ W F+ Q S +D +
Sbjct: 100 DSWRDEFLIQASPRDPE 116
>gi|239756748 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 100 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+ GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++
Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73
>gi|113426703 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 100 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+ GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++
Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73
>gi|113426673 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 100 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+ GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++
Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73
>gi|169210813 PREDICTED: similar to keratin 17 [Homo sapiens]
Length = 103
Score = 30.4 bits (67), Expect = 0.64
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 100 DKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+ GSL L L+KL L +NLE PE ++ + + YLK +S ++ ++
Sbjct: 24 EAGSLELPQGLDKLTLPGANLEMQPENLKEDLV-YLKKNHEEVSSAQGMQQ 73
>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
sapiens]
Length = 1911
Score = 29.3 bits (64), Expect = 1.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 5 KILFVGPCESGKTVLANFLTES--SDITEYSPTQGVRFESCWPALMKD 50
K+ +GP SGKT L N L E+ + +Y+ RF+ L+++
Sbjct: 393 KVFILGPQYSGKTTLCNMLAENYKGKVVDYAQLVQPRFDKARETLVEN 440
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 601 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 655
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 612 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 666
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 750 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 804
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 572 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 626
>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
Length = 3062
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300
>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
Length = 5171
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300
>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
Length = 2649
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 94 KPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+P S + + PL K L+ NL + EEI M+F++ L + ++ M DR E
Sbjct: 246 EPNSLQTLKLMQIRKPLLKSSLLDQNLTE--EEINMKFVQDLLNWVDEMQVQLDRTE 300
>gi|7242140 ClpX caseinolytic protease X homolog [Homo sapiens]
Length = 633
Score = 28.9 bits (63), Expect = 1.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 3 KAKILFVGPCESGKTVLANFLTESSDI 29
K+ IL +GP SGKT+LA L + D+
Sbjct: 286 KSNILLLGPTGSGKTLLAQTLAKCLDV 312
>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
Length = 182
Score = 28.9 bits (63), Expect = 1.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 3 KAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRFES 42
+ +IL +G +GKT L L S DI+ +PTQG +S
Sbjct: 17 EVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKS 55
>gi|33598956 ADP-ribosylation factor-like 2-like 1 isoform 1 [Homo
sapiens]
Length = 428
Score = 28.1 bits (61), Expect = 3.2
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 25/137 (18%)
Query: 3 KAKILFVGPCESGKTVLA--------------------NFLTESSDITEYSPTQGVRFES 42
K +L VG +GKT A N ++T + G+R
Sbjct: 21 KVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRG 80
Query: 43 CWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKP-----GS 97
W +++GV+ V ++ +E + S ++ P + +++A+ + G
Sbjct: 81 IWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGE 140
Query: 98 GDDKGSLSLSPPLNKLK 114
D LSL +N+ K
Sbjct: 141 ADVIECLSLEKLVNEHK 157
>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
Length = 1894
Score = 27.7 bits (60), Expect = 4.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 47 LMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQD 84
L KD+ +++ DIPS++ +E +YS + P++ D
Sbjct: 1789 LGKDSPSNKLLYAKDIPSYKNWVERYYSDIGKMPAISD 1826
>gi|113722116 plexin A2 [Homo sapiens]
Length = 1894
Score = 27.7 bits (60), Expect = 4.1
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 47 LMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSL 106
L KD+ +++ DIPS++ +E +Y+ + P++ D + A+ S ++
Sbjct: 1789 LGKDSPSNKLLYAKDIPSYKSWVERYYADIAKLPAISDQD--MNAYLAEQSRLHAVEFNM 1846
Query: 107 SPPLNKLKLVHSN--------LEDDPEEIRMEFIKYLKSIINSMS 143
LN++ S LE D + R ++ +IN+MS
Sbjct: 1847 LSALNEIYSYVSKYSEELIGALEQDEQARRQRLAYKVEQLINAMS 1891
>gi|5032223 plexin C1 [Homo sapiens]
Length = 1568
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 47 LMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQC--MLIAHHKPGSGDDKGSL 104
L K+A +++ DIP++++E++ +Y P L ++ L K + +
Sbjct: 1460 LGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEV 1519
Query: 105 SLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150
+L+ EI +KY I+N + R EE
Sbjct: 1520 ALT------------------EIYKYIVKYFDEILNKLERERGLEE 1547
>gi|239754732 PREDICTED: similar to hCG1737379 [Homo sapiens]
Length = 167
Score = 27.3 bits (59), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 84 DTQCMLIAHHKPGSGDDKGSLSLSPPLNKLKLVHSNL 120
+ QC L++ HKP D G+ S + P L + S L
Sbjct: 117 ELQCFLLSVHKPHCFPDPGAFSRTSPSPPLTTIGSGL 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,893,958
Number of Sequences: 37866
Number of extensions: 251403
Number of successful extensions: 754
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 43
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.