Search of human proteins with 195539356

Search of human proteins with 195539356

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens]       330   4e-91
gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]         330   4e-91
gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Hom...   231   3e-61
gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo...   231   3e-61
gi|153791216 proteasome beta 11 subunit [Homo sapiens]                176   1e-44
gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]       137   3e-33
gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo...    65   3e-11
gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo ...    65   3e-11
gi|23110925 proteasome beta 6 subunit [Homo sapiens]                   63   1e-10
gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]         60   8e-10
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]        52   2e-07
gi|4506193 proteasome beta 1 subunit [Homo sapiens]                    44   8e-05
gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]              42   3e-04
gi|22538465 proteasome beta 3 subunit [Homo sapiens]                   38   0.003
gi|4504747 integrin alpha 3 isoform a precursor [Homo sapiens]         34   0.047
gi|6006011 integrin alpha 3 isoform b precursor [Homo sapiens]         34   0.047
gi|23110942 proteasome alpha 5 subunit [Homo sapiens]                  31   0.52 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                29   1.5  
gi|8394456 toll-like receptor 9 isoform A precursor [Homo sapiens]     27   5.7  
gi|119709832 low density lipoprotein receptor-related protein 5 ...    27   7.5  
gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]         27   7.5  
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]        27   7.5  
gi|38049014 semenogelin I isoform b preproprotein [Homo sapiens]       27   9.8  
gi|4506883 semenogelin I isoform a preproprotein [Homo sapiens]        27   9.8  

>gi|195539356 proteasome beta 5 subunit isoform 2 [Homo sapiens]
          Length = 160

 Score =  330 bits (845), Expect = 4e-91
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW
Sbjct: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60

Query: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
           DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT
Sbjct: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120

Query: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 160
           YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP
Sbjct: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 160


>gi|4506201 proteasome beta 5 subunit isoform 1 [Homo sapiens]
          Length = 263

 Score =  330 bits (845), Expect = 4e-91
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW
Sbjct: 104 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 163

Query: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
           DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT
Sbjct: 164 DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 223

Query: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 160
           YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP
Sbjct: 224 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKYSGSTP 263


>gi|73747875 proteasome beta 8 subunit isoform E2 proprotein [Homo
           sapiens]
          Length = 276

 Score =  231 bits (588), Expect = 3e-61
 Identities = 105/155 (67%), Positives = 130/155 (83%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           M+G AADC +WERLLA++CR+Y LRN ERISV+AASKLL+NM+ QY+GMGLSMG+MICGW
Sbjct: 117 MSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGW 176

Query: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
           DK+GPGLYYVD  G R+SG  FS GSG+ YAYGVMD GY  +L  E+AYDL RRAI  AT
Sbjct: 177 DKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYAT 236

Query: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKY 155
           +RD+YSGG VN+YH++EDGW++V S +V+DL  +Y
Sbjct: 237 HRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQY 271


>gi|4758970 proteasome beta 8 subunit isoform E1 proprotein [Homo
           sapiens]
          Length = 272

 Score =  231 bits (588), Expect = 3e-61
 Identities = 105/155 (67%), Positives = 130/155 (83%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           M+G AADC +WERLLA++CR+Y LRN ERISV+AASKLL+NM+ QY+GMGLSMG+MICGW
Sbjct: 113 MSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGW 172

Query: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
           DK+GPGLYYVD  G R+SG  FS GSG+ YAYGVMD GY  +L  E+AYDL RRAI  AT
Sbjct: 173 DKKGPGLYYVDEHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYAT 232

Query: 121 YRDAYSGGAVNLYHVREDGWIRVSSDNVADLHEKY 155
           +RD+YSGG VN+YH++EDGW++V S +V+DL  +Y
Sbjct: 233 HRDSYSGGVVNMYHMKEDGWVKVESTDVSDLLHQY 267


>gi|153791216 proteasome beta 11 subunit [Homo sapiens]
          Length = 300

 Score =  176 bits (445), Expect = 1e-44
 Identities = 82/151 (54%), Positives = 112/151 (74%)

Query: 2   AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD 61
           +G +ADC+ W R+L R+ R+ ELR  +  SVA+A+KLL+ M+ QY+G+ L + T +CGWD
Sbjct: 95  SGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMMSQYRGLDLCVATALCGWD 154

Query: 62  KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATY 121
           + GP L+YV S+G R+ G  FSVGSGS YAYGV+DRGY YD+  ++AY LAR A+  AT+
Sbjct: 155 RSGPELFYVYSDGTRLQGDIFSVGSGSPYAYGVLDRGYRYDMSTQEAYALARCAVAHATH 214

Query: 122 RDAYSGGAVNLYHVREDGWIRVSSDNVADLH 152
           RDAYSGG+V+L+HVRE GW  VS  +   L+
Sbjct: 215 RDAYSGGSVDLFHVRESGWEHVSRSDACVLY 245


>gi|222144262 proteasome beta 5 subunit isoform 3 [Homo sapiens]
          Length = 203

 Score =  137 bits (346), Expect = 3e-33
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW
Sbjct: 104 MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 163

Query: 61  DKRGP 65
           DKRGP
Sbjct: 164 DKRGP 168


>gi|23110932 proteasome beta 9 subunit isoform 2 proprotein [Homo
           sapiens]
          Length = 209

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           ++G AAD      + A Q  ++ +  +E   V AA+ ++ N+ Y+Y+   LS   M+ GW
Sbjct: 55  LSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGW 113

Query: 61  DKRGPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQA 119
           D+R  G  Y  + G  ++   F++G SGS + YG +D  Y   +  E+       AI  A
Sbjct: 114 DQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALA 172

Query: 120 TYRDAYSGGAVNLYHVREDG 139
             RD  SGG + L  +   G
Sbjct: 173 MSRDGSSGGVIYLVTITAAG 192


>gi|4506205 proteasome beta 9 subunit isoform 1 proprotein [Homo
           sapiens]
          Length = 219

 Score = 64.7 bits (156), Expect = 3e-11
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 3/140 (2%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           ++G AAD      + A Q  ++ +  +E   V AA+ ++ N+ Y+Y+   LS   M+ GW
Sbjct: 65  LSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGW 123

Query: 61  DKRGPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQA 119
           D+R  G  Y  + G  ++   F++G SGS + YG +D  Y   +  E+       AI  A
Sbjct: 124 DQREGGQVY-GTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALA 182

Query: 120 TYRDAYSGGAVNLYHVREDG 139
             RD  SGG + L  +   G
Sbjct: 183 MSRDGSSGGVIYLVTITAAG 202


>gi|23110925 proteasome beta 6 subunit [Homo sapiens]
          Length = 239

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 2   AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD 61
           +G AAD       +  Q   + +   E   V  A+ L   M Y+Y+   L  G +I GWD
Sbjct: 80  SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWD 138

Query: 62  KRGPGLYYVDSEGNRISGATFSVG-SGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
            +  G  Y    G  +   +F++G SGS Y YG +D  Y   +  E+       A+  A 
Sbjct: 139 PQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAM 198

Query: 121 YRDAYSGGAVNLYHVREDG 139
            RD  SGG + L  + E G
Sbjct: 199 ERDGSSGGVIRLAAIAESG 217


>gi|4506203 proteasome beta 7 subunit proprotein [Homo sapiens]
          Length = 277

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 2   AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD 61
           AG AAD     +L++    ++ L       V  A+++L  M+++Y+G  +    ++ G D
Sbjct: 89  AGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVD 147

Query: 62  KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATY 121
             GP LY +   G+       ++GSGS+ A  V +  +  D+E E+A +L   AI    +
Sbjct: 148 VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIF 207

Query: 122 RDAYSGGAVNL 132
            D  SG  ++L
Sbjct: 208 NDLGSGSNIDL 218


>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
          Length = 273

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)

Query: 2   AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG-MGLSMGTMICGW 60
           AG AAD     R++A +  ++ L       VA  +++L   +++Y+G +G S+  ++ G 
Sbjct: 85  AGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQGHVGASL--IVGGV 142

Query: 61  DKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQAT 120
           D  GP LY V   G+       ++GSG   A  V++  +  ++ +E A  L   A+    
Sbjct: 143 DLTGPQLYGVHPHGSYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGI 202

Query: 121 YRDAYSGGAVNLYHVREDG 139
             D  SGG V+   + + G
Sbjct: 203 LGDLGSGGNVDACVITKTG 221


>gi|4506193 proteasome beta 1 subunit [Homo sapiens]
          Length = 241

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 2   AGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWD 61
           +G   DC    +++  + ++Y+  N + ++  A + +L+ ++Y  +     +  +I G D
Sbjct: 83  SGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLD 142

Query: 62  KRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD---------LEVEQAYDL 111
           + G G +Y  D  G+    +  + GS S     ++D    +          L +++A  L
Sbjct: 143 EEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRL 202

Query: 112 ARRAIYQATYRDAYSGGAVNLYHVREDG 139
            +     A  RD Y+G A+ +  V ++G
Sbjct: 203 VKDVFISAAERDVYTGDALRICIVTKEG 230


>gi|4506181 proteasome subunit alpha type 2 [Homo sapiens]
          Length = 234

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 13  RLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMG----LSMGTMICGWDKRGPGLY 68
           R LA+Q   Y L  +E I  A   + +A+++ +Y   G      +  +ICGW++  P L+
Sbjct: 91  RKLAQQ---YYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 147

Query: 69  YVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA 112
             D  G   +    ++G   V     +++ Y+ DLE+E A   A
Sbjct: 148 QSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTA 191


>gi|22538465 proteasome beta 3 subunit [Homo sapiens]
          Length = 205

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)

Query: 1   MAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGW 60
           +AG A D     + L  +  +YEL+   +I       ++AN++Y+ +        +I G 
Sbjct: 53  LAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGL 112

Query: 61  DKRG--PGLYYVDSEGNRISGATFSV-GSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIY 117
           D +   P +  +D  G  +    F V G+ +   YG+ +  +  +++ +  ++   +A+ 
Sbjct: 113 DPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAML 172

Query: 118 QATYRDAYSGGAVNLYHVRED 138
            A  RDA SG  V ++ + +D
Sbjct: 173 NAVDRDAVSGMGVIVHIIEKD 193


>gi|4504747 integrin alpha 3 isoform a precursor [Homo sapiens]
          Length = 1051

 Score = 34.3 bits (77), Expect = 0.047
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 60  WDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVM---------DRGYSYDLEVEQAYD 110
           WD         + +GN   G T  VGS  ++   +            G  + L  E   D
Sbjct: 232 WDLSEYSYKDPEDQGNLYIGYTMQVGSFILHPKNITIVTGAPRHRHMGAVFLLSQEAGGD 291

Query: 111 LARRAIYQATYRDAYSGGAVNLYHVREDGW 140
           L RR + + +   AY G A+ L  +  DGW
Sbjct: 292 LRRRQVLEGSQVGAYFGSAIALADLNNDGW 321


>gi|6006011 integrin alpha 3 isoform b precursor [Homo sapiens]
          Length = 1066

 Score = 34.3 bits (77), Expect = 0.047
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 60  WDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVM---------DRGYSYDLEVEQAYD 110
           WD         + +GN   G T  VGS  ++   +            G  + L  E   D
Sbjct: 232 WDLSEYSYKDPEDQGNLYIGYTMQVGSFILHPKNITIVTGAPRHRHMGAVFLLSQEAGGD 291

Query: 111 LARRAIYQATYRDAYSGGAVNLYHVREDGW 140
           L RR + + +   AY G A+ L  +  DGW
Sbjct: 292 LRRRQVLEGSQVGAYFGSAIALADLNNDGW 321


>gi|23110942 proteasome alpha 5 subunit [Homo sapiens]
          Length = 241

 Score = 30.8 bits (68), Expect = 0.52
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 9/90 (10%)

Query: 28  ERISVAAASKLLANMVYQYKGMGLSMGTM---------ICGWDKRGPGLYYVDSEGNRIS 78
           E ++V + ++ ++N+  Q+       G M           G D++GP L+++D  G  + 
Sbjct: 105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQ 164

Query: 79  GATFSVGSGSVYAYGVMDRGYSYDLEVEQA 108
               ++GS S  A   +   Y   + +++A
Sbjct: 165 CDARAIGSASEGAQSSLQEVYHKSMTLKEA 194


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 19/105 (18%)

Query: 67  LYYVDSEGNRISGA-TFSVGSGSVYAYGVMDRG-------YSYDLEVEQAYDLARRAIYQ 118
           LY   S  N  +G  T  VG    +AY V  +G       Y  ++     YD      Y+
Sbjct: 598 LYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDE-----YK 652

Query: 119 ATYRDAYSGGAVNLYHVREDGWIRVSSDNVADL------HEKYSG 157
             Y D  SGGAV      +  W+++ SD    L      H  +SG
Sbjct: 653 KGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSG 697


>gi|8394456 toll-like receptor 9 isoform A precursor [Homo sapiens]
          Length = 1032

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 12/17 (70%), Positives = 13/17 (76%)

Query: 65  PGLYYVDSEGNRISGAT 81
           PGL YVD   NRISGA+
Sbjct: 415 PGLRYVDLSDNRISGAS 431


>gi|119709832 low density lipoprotein receptor-related protein 5
           [Homo sapiens]
          Length = 1615

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 56  MICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 109
           + C W   G  LY+ DSE NRI  A  +  S  V  +  +D+  +  L+    Y
Sbjct: 113 LACDWV--GKKLYWTDSETNRIEVANLNGTSRKVLFWQDLDQPRAIALDPAHGY 164


>gi|4506179 proteasome alpha 1 subunit isoform 2 [Homo sapiens]
          Length = 263

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 53  MGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLE 104
           +G +I G+D  GP ++      N       S+G+ S  A   ++R  S  +E
Sbjct: 130 VGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 181


>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
          Length = 269

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 53  MGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLE 104
           +G +I G+D  GP ++      N       S+G+ S  A   ++R  S  +E
Sbjct: 136 VGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFME 187


>gi|38049014 semenogelin I isoform b preproprotein [Homo sapiens]
          Length = 402

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 66  GLYYVDSEGNRISGATFSVGSGSV-YAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDA 124
           G +Y   +G +    T S GS S+ Y Y V    +    + +Q YDL   A+++ T    
Sbjct: 45  GQHYSGQKGKQ---QTESKGSFSIQYTYHVDANDHDQSRKSQQ-YDL--NALHKTTKSQR 98

Query: 125 YSGGAVNLYHVREDG 139
           + GG+  L H +++G
Sbjct: 99  HLGGSQQLLHNKQEG 113


>gi|4506883 semenogelin I isoform a preproprotein [Homo sapiens]
          Length = 462

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 66  GLYYVDSEGNRISGATFSVGSGSV-YAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDA 124
           G +Y   +G +    T S GS S+ Y Y V    +    + +Q YDL   A+++ T    
Sbjct: 45  GQHYSGQKGKQ---QTESKGSFSIQYTYHVDANDHDQSRKSQQ-YDL--NALHKTTKSQR 98

Query: 125 YSGGAVNLYHVREDG 139
           + GG+  L H +++G
Sbjct: 99  HLGGSQQLLHNKQEG 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,838,621
Number of Sequences: 37866
Number of extensions: 220219
Number of successful extensions: 450
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 26
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.