Guide to the Human Genome
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Name: ITGA3 Sequence: fasta or formatted (1051aa) NCBI GI: 4504747
Description:

integrin alpha 3 isoform a precursor

Referenced in:

Integrins

Other entries for this name:
alt prot [1066aa] integrin alpha 3 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         72           3
 C cysteine            2.0         21           1
 D aspartate           4.9         52           2
 E glutamate           5.4         57           2
 F phenylalanine       3.3         35           2
 G glycine             8.5         89           3
 H histidine           2.2         23           2
 I isoleucine          3.6         38           3
 K lysine              3.1         33           2
 L leucine            12.1        127           4
 M methionine          2.6         27           1
 N asparagine          4.4         46           2
 P proline             6.0         63           3
 Q glutamine           4.7         49           3
 R arginine            6.5         68           4
 S serine              6.5         68           3
 T threonine           5.4         57           2
 V valine              7.0         74           2
 W tryptophan          1.5         16           1
 Y tyrosine            3.4         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 3 isoform a precursor 
ITGA3                 0.973   integrin alpha 3 isoform b precursor 
ITGA6                 0.296   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA6                 0.287   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA7                 0.285   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.281   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.235   integrin alpha 7 isoform 3 
ITGA8                 0.125   integrin, alpha 8 
ITGA9                 0.118   integrin, alpha 9 precursor 
ITGAV                 0.116   integrin alpha-V isoform 1 precursor 
ITGA2B                0.115   integrin alpha 2b preproprotein 
ITGAV                 0.111   integrin alpha-V isoform 2 
ITGA5                 0.110   integrin alpha 5 precursor 
ITGAV                 0.105   integrin alpha-V isoform 3 precursor 
ITGA4                 0.104   integrin alpha 4 precursor 
ITGA1                 0.098   integrin, alpha 1 precursor 
ITGA10                0.073   integrin, alpha 10 precursor 
ITGAL                 0.071   integrin alpha L isoform b precursor 
ITGAL                 0.070   integrin alpha L isoform a precursor 
ITGA11                0.070   integrin, alpha 11 precursor 
ITGA2                 0.069   integrin alpha 2 precursor 
ITGAE                 0.069   integrin, alpha E precursor 
ITGAM                 0.067   integrin alpha M isoform 1 precursor 
ITGAM                 0.066   integrin alpha M isoform 2 precursor 
ITGAD                 0.062   integrin, alpha D precursor 
ITGAX                 0.058   integrin alpha X precursor 
GPLD1                 0.018   glycosylphosphatidylinositol specific phospholipase ...
LHX3                  0.005   LIM homeobox protein 3 isoform a 
LHX3                  0.005   LIM homeobox protein 3 isoform b 
LOC100289853          0.005   PREDICTED: hypothetical protein XP_002347690 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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