Guide to the Human Genome
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Name: ITGA3 Sequence: fasta or formatted (1066aa) NCBI GI: 6006011
Description:

integrin alpha 3 isoform b precursor

Referenced in:

Integrins

Other entries for this name:
alt prot [1051aa] integrin alpha 3 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         69           3
 C cysteine            2.0         21           1
 D aspartate           4.9         52           2
 E glutamate           5.3         56           3
 F phenylalanine       3.3         35           2
 G glycine             8.3         89           3
 H histidine           2.3         25           2
 I isoleucine          3.8         40           3
 K lysine              3.1         33           2
 L leucine            11.8        126           4
 M methionine          2.5         27           1
 N asparagine          4.3         46           2
 P proline             6.3         67           3
 Q glutamine           4.7         50           3
 R arginine            6.5         69           4
 S serine              6.4         68           3
 T threonine           5.5         59           2
 V valine              7.1         76           2
 W tryptophan          1.7         18           1
 Y tyrosine            3.8         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 3 isoform b precursor 
ITGA3                 0.954   integrin alpha 3 isoform a precursor 
ITGA6                 0.296   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA7                 0.284   integrin alpha 7 isoform 2 precursor 
ITGA6                 0.281   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA7                 0.280   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.235   integrin alpha 7 isoform 3 
ITGA8                 0.121   integrin, alpha 8 
ITGA9                 0.114   integrin, alpha 9 precursor 
ITGAV                 0.112   integrin alpha-V isoform 1 precursor 
ITGA2B                0.112   integrin alpha 2b preproprotein 
ITGAV                 0.108   integrin alpha-V isoform 2 
ITGA5                 0.106   integrin alpha 5 precursor 
ITGAV                 0.102   integrin alpha-V isoform 3 precursor 
ITGA4                 0.102   integrin alpha 4 precursor 
ITGA1                 0.095   integrin, alpha 1 precursor 
ITGA10                0.071   integrin, alpha 10 precursor 
ITGAL                 0.070   integrin alpha L isoform b precursor 
ITGAL                 0.069   integrin alpha L isoform a precursor 
ITGA11                0.068   integrin, alpha 11 precursor 
ITGAE                 0.067   integrin, alpha E precursor 
ITGA2                 0.066   integrin alpha 2 precursor 
ITGAM                 0.064   integrin alpha M isoform 1 precursor 
ITGAM                 0.063   integrin alpha M isoform 2 precursor 
ITGAD                 0.061   integrin, alpha D precursor 
ITGAX                 0.057   integrin alpha X precursor 
GPLD1                 0.018   glycosylphosphatidylinositol specific phospholipase ...
LHX3                  0.005   LIM homeobox protein 3 isoform a 
LHX3                  0.005   LIM homeobox protein 3 isoform b 
PSMB5                 0.004   proteasome beta 5 subunit isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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