Guide to the Human Genome
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Search of human proteins with 194440697

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194440697 lymphocyte antigen 6 complex, locus H isoform b
[Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Ho...   340   2e-94
gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Ho...   340   2e-94
gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Ho...   299   8e-82
gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]      58   3e-09
gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]        58   3e-09
gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    47   5e-06
gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo s...    47   5e-06
gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo ...    47   5e-06
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]       47   9e-06
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]     44   8e-05
gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo ...    43   1e-04
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]               40   7e-04
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    36   0.013
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    36   0.013
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]    36   0.013
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]    36   0.016
gi|9966907 ARS component B precursor [Homo sapiens]                    34   0.048
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         31   0.53 
gi|24041035 notch 2 preproprotein [Homo sapiens]                       30   0.69 
gi|126012562 low density lipoprotein-related protein 1 [Homo sap...    30   0.69 
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ...    30   0.69 
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ...    30   0.69 
gi|126012573 low density lipoprotein-related protein 2 [Homo sap...    30   0.69 
gi|54873613 agrin [Homo sapiens]                                       30   0.90 
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]            30   0.90 
gi|31563503 activity-dependent neuroprotector [Homo sapiens]           30   0.90 
gi|12229217 activity-dependent neuroprotector [Homo sapiens]           30   0.90 
gi|5032115 sprouty 2 [Homo sapiens]                                    30   1.2  
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]               30   1.2  
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]               30   1.2  

>gi|208431840 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score =  340 bits (873), Expect = 2e-94
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
           MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
Sbjct: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60

Query: 61  CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
           CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK
Sbjct: 61  CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120

Query: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
           VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP
Sbjct: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161


>gi|194440697 lymphocyte antigen 6 complex, locus H isoform b [Homo
           sapiens]
          Length = 161

 Score =  340 bits (873), Expect = 2e-94
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60
           MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH
Sbjct: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSH 60

Query: 61  CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120
           CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK
Sbjct: 61  CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK 120

Query: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161
           VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP
Sbjct: 121 VDVDCCEKDLCNGAAGAGHSPWALAGGLLLSLGPALLWAGP 161


>gi|208431838 lymphocyte antigen 6 complex, locus H isoform a [Homo
           sapiens]
          Length = 140

 Score =  299 bits (765), Expect = 8e-82
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 22  MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 81
           MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP
Sbjct: 1   MLPAAMKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDP 60

Query: 82  SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 141
           SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP
Sbjct: 61  SSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSP 120

Query: 142 WALAGGLLLSLGPALLWAGP 161
           WALAGGLLLSLGPALLWAGP
Sbjct: 121 WALAGGLLLSLGPALLWAGP 140


>gi|187761331 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 34  LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
           LLA LL    A  L C  C    ++ +C  P  C   D  C +V  +    +     HS+
Sbjct: 8   LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67

Query: 91  NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
           +K C+ +C   +           +N G+  + + CC+  LCN +A  G    S   L  G
Sbjct: 68  SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117

Query: 148 LLLSLGPALLWAGP 161
           LLLSL PALL  GP
Sbjct: 118 LLLSLLPALLRFGP 131


>gi|4505049 lymphocyte antigen 6 complex, locus E [Homo sapiens]
          Length = 131

 Score = 58.2 bits (139), Expect = 3e-09
 Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 34  LLAVLLCSAPAHGLWCQDCTLTTNSSHCT-PKQCQPSDTVCASVRITDPSSSRKD--HSV 90
           LLA LL    A  L C  C    ++ +C  P  C   D  C +V  +    +     HS+
Sbjct: 8   LLAALLGVERASSLMCFSCLNQKSNLYCLKPTICSDQDNYCVTVSASAGIGNLVTFGHSL 67

Query: 91  NKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG---HSPWALAGG 147
           +K C+ +C   +           +N G+  + + CC+  LCN +A  G    S   L  G
Sbjct: 68  SKTCSPACPIPEG----------VNVGVASMGISCCQSFLCNFSAADGGLRASVTLLGAG 117

Query: 148 LLLSLGPALLWAGP 161
           LLLSL PALL  GP
Sbjct: 118 LLLSLLPALLRFGP 131


>gi|239754985 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 27  MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
           M+ L + LL   +C+A A  L C  C       HC    +C P+D  C   R T P    
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57

Query: 86  KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
               V K C+ +C               ++S    + V CC+   CN +A AG   SP  
Sbjct: 58  ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100

Query: 144 LAGGLLLSLGPALLWA 159
             G L  S+  + LWA
Sbjct: 101 --GTLWASIAASQLWA 114


>gi|239749508 PREDICTED: similar to RIKEN cDNA D730001G18 [Homo
           sapiens]
          Length = 190

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 27  MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
           M+ L + LL   +C+A A  L C  C       HC    +C P+D  C   R T P    
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57

Query: 86  KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
               V K C+ +C               ++S    + V CC+   CN +A AG   SP  
Sbjct: 58  ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100

Query: 144 LAGGLLLSLGPALLWA 159
             G L  S+  + LWA
Sbjct: 101 --GTLWASIAASQLWA 114


>gi|239743642 PREDICTED: hypothetical protein XP_002342921 [Homo
           sapiens]
          Length = 190

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 25/136 (18%)

Query: 27  MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPK-QCQPSDTVCASVRITDPSSSR 85
           M+ L + LL   +C+A A  L C  C       HC    +C P+D  C   R T P    
Sbjct: 1   MRLLLVLLLLAAVCAALAQALHCHVCC---GHEHCESLVECAPTDKYCVITRATSPGGIL 57

Query: 86  KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAG--HSPWA 143
               V K C+ +C               ++S    + V CC+   CN +A AG   SP  
Sbjct: 58  ----VMKSCSPTCP-----------NSTVSSDSRALSVSCCQGSQCNRSAAAGLVGSP-- 100

Query: 144 LAGGLLLSLGPALLWA 159
             G L  S+  + LWA
Sbjct: 101 --GTLWASIAASQLWA 114


>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
          Length = 128

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 15/126 (11%)

Query: 32  LALLAVLLCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVN 91
           L L A+ + + PA  L C  CT ++N  H     C  S   C +    +P    + + V 
Sbjct: 6   LLLAALAVATGPALTLRCHVCTSSSNCKHSV--VCPASSRFCKTTNTVEP---LRGNLVK 60

Query: 92  KMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAA-GAGHSPWALAGGLLL 150
           K CA SC        S  L G ++SG       CC++DLCN     A  +  ALA    L
Sbjct: 61  KDCAESCT------PSYTLQGQVSSG--TSSTQCCQEDLCNEKLHNAAPTRTALAHS-AL 111

Query: 151 SLGPAL 156
           SLG AL
Sbjct: 112 SLGLAL 117


>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
          Length = 123

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 27  MKGLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHCTP-KQCQPSDTVCASVRITDPSSSR 85
           MK + LALL   L   P   L C  C    ++  C   + C      C + RI       
Sbjct: 1   MKAVLLALLMAGLALQPGTALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLT 60

Query: 86  KDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALA 145
               ++K C+ +C    +    DY +G       K ++ CC+ DLCN +      P A  
Sbjct: 61  V---ISKGCSLNCVDDSQ----DYYVG-------KKNITCCDTDLCNASGAHALQPAAAI 106

Query: 146 GGLLLSLGPALLWAGP 161
             LL +LG  LLW GP
Sbjct: 107 LALLPALG-LLLW-GP 120


>gi|29294643 secreted Ly6/uPAR related protein 2 isoform b [Homo
           sapiens]
          Length = 97

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 14/105 (13%)

Query: 29  GLGLALLAVL-LCSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKD 87
           G GL L AVL L  A A  +WC  CT     SH    +C    T C +      S++   
Sbjct: 4   GTGLLLAAVLSLQLAAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDL 61

Query: 88  HSVNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
             V KMC   C  +       Y           V + CC+  LCN
Sbjct: 62  PLVTKMCHIGCPDIPSLGLGPY-----------VSIACCQTSLCN 95


>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
          Length = 125

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 22/114 (19%)

Query: 27  MKGLGLALLAVLL--CSAPAHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASV----RIT 79
           M+G  LALLA++L  C   A  L C  C   T  S C T   C  ++T+C +      I 
Sbjct: 1   MRGTRLALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTTLYSREIV 60

Query: 80  DPSSSRKDHSVNKMCASSCDFVKRHFFSDYLMGFINSGILK-VDVDCCEKDLCN 132
            P     D +V K CAS C        SD        GI + + V CC  +LCN
Sbjct: 61  YPFQG--DSTVTKSCASKCKP------SDV------DGIGQTLPVSCCNTELCN 100


>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 32  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59

Query: 90  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109

Query: 150 LSL 152
            +L
Sbjct: 110 ATL 112


>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 32  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59

Query: 90  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109

Query: 150 LSL 152
            +L
Sbjct: 110 ATL 112


>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
          Length = 116

 Score = 36.2 bits (82), Expect = 0.013
 Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 32  LALLAVLLCSAP-AHGLWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS 89
           L L+ V+L   P A  L C  C    N  +C  P +C      C + R     +  K   
Sbjct: 5   LTLILVVLMGLPLAQALDCHVCAY--NGDNCFNPMRCPAMVAYCMTTRTYYTPTRMK--- 59

Query: 90  VNKMCASSCDFVKRHFFSDYLMGFINSGILKVDVDCCEKDLCNGAAGAGHSPWALAGGLL 149
           V+K C   C       F     G+           CC+ DLCNG   A  +  ALA  LL
Sbjct: 60  VSKSCVPRC-------FETVYDGYSKHAST---TSCCQYDLCNGTGLATPATLALAPILL 109

Query: 150 LSL 152
            +L
Sbjct: 110 ATL 112


>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens]
          Length = 131

 Score = 35.8 bits (81), Expect = 0.016
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 13/92 (14%)

Query: 41  SAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF 100
           ++ A  +WC  CT     SH    +C    T C +      S++     V KMC   C  
Sbjct: 51  TSAAEAIWCHQCTGFGGCSH--GSRCLRDSTHCVTTATRVLSNTEDLPLVTKMCHIGCPD 108

Query: 101 VKRHFFSDYLMGFINSGILKVDVDCCEKDLCN 132
           +       Y           V + CC+  LCN
Sbjct: 109 IPSLGLGPY-----------VSIACCQTSLCN 129


>gi|9966907 ARS component B precursor [Homo sapiens]
          Length = 103

 Score = 34.3 bits (77), Expect = 0.048
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 47  LWCQDCTLTTNSSHC-TPKQCQPSDTVCASVRITDPSSSRKDHS--VNKMCASSCDFVKR 103
           L C  C     S+ C T  +C+P DT C +  +T  +    + S  V + C+SSC     
Sbjct: 23  LKCYTCKEPMTSASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCVATDP 82

Query: 104 HFFSDYLMGFINSGILKVDVDCCEKDLCN 132
                  + F           CC +DLCN
Sbjct: 83  DSIGAAHLIF-----------CCFRDLCN 100


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 30.8 bits (68), Expect = 0.53
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 3    APQRTRAPSPRAAPRPTRSMLPAAMKGL-GLALLAVLLCSAPAHGLWCQDCTLTTNSSHC 61
            +P R R P P   PRPT +  PAA+  L  + + A +  SAP          +T    H 
Sbjct: 2430 SPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPISAPN--------PITILPVHI 2481

Query: 62   TPKQCQPSD-TVCASVRITDP 81
             P    PS    C+S   T P
Sbjct: 2482 LPSPPPPSQIPPCSSPACTPP 2502


>gi|24041035 notch 2 preproprotein [Homo sapiens]
          Length = 2471

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 23 LPAAMKGLGLALLAV-LLCSAPAHGLWCQD 51
          +PA    L  ALLA+ L C+APAH L C+D
Sbjct: 1  MPALRPALLWALLALWLCCAAPAHALQCRD 30


>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
          Length = 4544

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 51   DCTLTTNSSHCTPKQCQPSDTVCASVRI------TDPSSSRKDHSVNKMCASSCD 99
            DC   ++   CTP+ C  S+  CA+ R        D      D S  K C   CD
Sbjct: 3560 DCGDNSDEESCTPRPCSESEFSCANGRCIAGRWKCDGDHDCADGSDEKDCTPRCD 3614



 Score = 28.1 bits (61), Expect = 3.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 53  TLTTNSSHCTPKQCQPSDTVCASVR 77
           T   N S+  P QCQP +  CA+ R
Sbjct: 841 TCLANPSYVPPPQCQPGEFACANSR 865


>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
            sapiens]
          Length = 2134

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)

Query: 49   CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 103
            C +CT    S  CT  +CQ   T+C       VR  D     K +S + +C  S      
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342

Query: 104  HFFSDYLMGFINS--GILKVDVDCCEKDL 130
             F  DY  G  N    IL   V CCE  L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369


>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
            sapiens]
          Length = 2134

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 22/89 (24%)

Query: 49   CQDCTLTTNSSHCTPKQCQPSDTVC-----ASVRITDPSSSRKDHSVNKMCASSCDFVKR 103
            C +CT    S  CT  +CQ   T+C       VR  D     K +S + +C  S      
Sbjct: 1296 CNECTCIKGSWSCTQNECQ---TICHIYGEGHVRTFD----GKSYSFDGLCQYS------ 1342

Query: 104  HFFSDYLMGFINS--GILKVDVDCCEKDL 130
             F  DY  G  N    IL   V CCE  L
Sbjct: 1343 -FLEDY-CGHENGTFRILTESVPCCEDGL 1369


>gi|126012573 low density lipoprotein-related protein 2 [Homo
          sapiens]
          Length = 4655

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 34 LLAVLLCSAPAHGLWCQDCTLTTNSSHCTP 63
          LLA++ C APA G  C        S HC P
Sbjct: 13 LLALVACLAPASGQECDSAHFRCGSGHCIP 42



 Score = 30.0 bits (66), Expect = 0.90
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 50  QDCTLTTNSSH---CTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCD 99
           QDC+ +T SSH   C+  QC PS+  C  VR     +   D         +CD
Sbjct: 101 QDCSQSTCSSHQITCSNGQCIPSEYRCDHVRDCPDGADENDCQYPTCEQLTCD 153



 Score = 26.6 bits (57), Expect = 9.9
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%)

Query: 49   CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCASSCDF-VKRHFFS 107
            C+D +   +SSHC  + C+P    CA+ R   P + + D  V+  C    D  ++    S
Sbjct: 3619 CEDNS-DEDSSHCASRTCRPGQFRCANGRCI-PQAWKCD--VDNDCGDHSDEPIEECMSS 3674

Query: 108  DYLMGFINSGILKVDVDCCEK-DLCNG 133
             +L         K +  C  K  +CNG
Sbjct: 3675 AHLCDNFTEFSCKTNYRCIPKWAVCNG 3701


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 40  CSAPAHGLWCQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRKDHSVNKMCAS-SC 98
           CS    G    DC   T    C P    P    C   R   P+    D S    CA   C
Sbjct: 847 CSCDPQGAVRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRC 906

Query: 99  DFVKR 103
           +F  R
Sbjct: 907 EFGAR 911


>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 12/74 (16%)

Query: 10  PSPRAAPRPTRSMLPAAMK--------GLGLALLAVLLCSAPAHGLWCQDCTLTTNSSHC 61
           P+P   P P R  L              L  ALL +L C A    LW   C L T +  C
Sbjct: 171 PAPARDPAPRRGRLARCWARCRDWRRMALVSALLLMLFCVA----LWPVQCALKTGNLRC 226

Query: 62  TPKQCQPSDTVCAS 75
            P   +P  T  A+
Sbjct: 227 LPLPPRPPATSTAA 240


>gi|31563503 activity-dependent neuroprotector [Homo sapiens]
          Length = 1102

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 64  KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 115
           KQ +P+D     T    V + DPS ++ +D+     C S+C F  + FFS Y   F N
Sbjct: 39  KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95


>gi|12229217 activity-dependent neuroprotector [Homo sapiens]
          Length = 1102

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 64  KQCQPSD-----TVCASVRITDPSSSR-KDHSVNKMCASSCDFVKRHFFSDYLMGFIN 115
           KQ +P+D     T    V + DPS ++ +D+     C S+C F  + FFS Y   F N
Sbjct: 39  KQFEPNDFYLKNTTWEDVGLWDPSLTKNQDYRTKPFCCSACPFSSK-FFSAYKSHFRN 95


>gi|5032115 sprouty 2 [Homo sapiens]
          Length = 315

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 29  GLGLALLAVLLCSAPAHGLW--CQDCTLTTNSSHCTPKQCQPSDTVCASVRITDPSSSRK 86
           G+    L  L C  PA G    CQ C    N   C   +C+ S+TVC  V    P +  K
Sbjct: 257 GVMSLFLPCLWCYLPAKGCLKLCQGCYDRVNRPGC---RCKNSNTVCCKVPTVPPRNFEK 313


>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
          Length = 1184

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAH---------GLWCQD 51
           ++ P+  R P P AAPR       A  + L L   A L  S P           G  CQ 
Sbjct: 559 LIVPEVRRPPEPAAAPRRVSEAEMAGREALSLGTEAELPNSLPGDDQDECLLLPGELCQH 618

Query: 52  -CTLTTNSSHC 61
            C  T  S HC
Sbjct: 619 LCINTVGSYHC 629


>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
          Length = 1231

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 1   MLAPQRTRAPSPRAAPRPTRSMLPAAMKGLGLALLAVLLCSAPAH---------GLWCQD 51
           ++ P+  R P P AAPR       A  + L L   A L  S P           G  CQ 
Sbjct: 559 LIVPEVRRPPEPAAAPRRVSEAEMAGREALSLGTEAELPNSLPGDDQDECLLLPGELCQH 618

Query: 52  -CTLTTNSSHC 61
            C  T  S HC
Sbjct: 619 LCINTVGSYHC 629


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,314,676
Number of Sequences: 37866
Number of extensions: 353699
Number of successful extensions: 1732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1622
Number of HSP's gapped (non-prelim): 137
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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