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Search of human proteins with 194306537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194306537 gametocyte specific factor 1 [Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194306537 gametocyte specific factor 1 [Homo sapiens] 366 e-102
gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo sa... 77 7e-15
gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo sa... 74 4e-14
gi|223941846 zinc finger protein 652 [Homo sapiens] 32 0.19
gi|7662384 zinc finger protein 652 [Homo sapiens] 32 0.19
gi|71143123 U11/U12 snRNP 48K [Homo sapiens] 32 0.33
gi|157364947 ecotropic viral integration site 1 isoform a [Homo ... 30 0.74
gi|157364945 ecotropic viral integration site 1 isoform b [Homo ... 30 0.74
gi|157364943 ecotropic viral integration site 1 isoform b [Homo ... 30 0.74
gi|4557241 actinin, alpha 3 [Homo sapiens] 30 0.96
gi|226493203 coiled-coil domain containing 76 [Homo sapiens] 28 2.8
gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens] 28 3.7
gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens] 28 3.7
gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens] 27 6.2
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 27 8.1
gi|194097352 actinin, alpha 1 isoform c [Homo sapiens] 27 8.1
gi|194097350 actinin, alpha 1 isoform a [Homo sapiens] 27 8.1
gi|4501891 actinin, alpha 1 isoform b [Homo sapiens] 27 8.1
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 27 8.1
>gi|194306537 gametocyte specific factor 1 [Homo sapiens]
Length = 167
Score = 366 bits (939), Expect = e-102
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVP 60
MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVP
Sbjct: 1 MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVP 60
Query: 61 RAEISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFV 120
RAEISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFV
Sbjct: 61 RAEISHHISSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLWEQTSTPFV 120
Query: 121 WGTTHYSDNNSPASNIVTEHKNNLASGMRVPKSLPYVLPWKNNGNAQ 167
WGTTHYSDNNSPASNIVTEHKNNLASGMRVPKSLPYVLPWKNNGNAQ
Sbjct: 121 WGTTHYSDNNSPASNIVTEHKNNLASGMRVPKSLPYVLPWKNNGNAQ 167
>gi|31088934 gametocyte specific factor 1-like isoform 1 [Homo
sapiens]
Length = 148
Score = 77.0 bits (188), Expect = 7e-15
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 9 LDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHI 68
++PE CPYD +H+I RF YHL CR+ +P A K+ATC +NA H VP + H
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 69 SSCDDRSCI-EQDVVNQTR----SLRQETLAESTWQCPPCDEDWDKD 110
+ C +RS + E+D N + S Q + C P + W+ D
Sbjct: 61 AVCVNRSAVEEEDTENPLKVSPPSSEQNDDTQQVSPCLPSPDIWNVD 107
>gi|57165364 gametocyte specific factor 1-like isoform 2 [Homo
sapiens]
Length = 123
Score = 74.3 bits (181), Expect = 4e-14
Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 9 LDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHI 68
++PE CPYD +H+I RF YHL CR+ +P A K+ATC +NA H VP + H
Sbjct: 1 MEPEAFEICPYDPHHRIPLSRFQYHLASCRRKNPKKAKKMATCKYNACHVVPIKNLEEHE 60
Query: 69 SSCDDRSCIEQD 80
+ C +RS +E++
Sbjct: 61 AVCVNRSAVEEE 72
>gi|223941846 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 32.3 bits (72), Expect = 0.19
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 13 KLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCP--FNARHQVPR-AEISHH-I 68
K ++ P K + + P KC + K CP FN R + + ++H +
Sbjct: 215 KSVEPPKRKKRATKEPKAPVQKAKCEEKETLTCEK---CPRVFNTRWYLEKHMNVTHRRM 271
Query: 69 SSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLW 112
CD C ++ V+ SL Q+T E QC C++ + K LW
Sbjct: 272 QICD--KCGKKFVLESELSLHQQTDCEKNIQCVSCNKSF-KKLW 312
>gi|7662384 zinc finger protein 652 [Homo sapiens]
Length = 606
Score = 32.3 bits (72), Expect = 0.19
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 10/104 (9%)
Query: 13 KLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCP--FNARHQVPR-AEISHH-I 68
K ++ P K + + P KC + K CP FN R + + ++H +
Sbjct: 215 KSVEPPKRKKRATKEPKAPVQKAKCEEKETLTCEK---CPRVFNTRWYLEKHMNVTHRRM 271
Query: 69 SSCDDRSCIEQDVVNQTRSLRQETLAESTWQCPPCDEDWDKDLW 112
CD C ++ V+ SL Q+T E QC C++ + K LW
Sbjct: 272 QICD--KCGKKFVLESELSLHQQTDCEKNIQCVSCNKSF-KKLW 312
>gi|71143123 U11/U12 snRNP 48K [Homo sapiens]
Length = 339
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 7 DSLDP-------EKLLQCPYDKNHQIRACRFPYHLIKCR 38
DSLDP ++++ CPYD NH + H+ CR
Sbjct: 41 DSLDPGEEEAAEDEVVICPYDSNHHMPKSSLAKHMASCR 79
Score = 30.0 bits (66), Expect = 0.96
Identities = 7/25 (28%), Positives = 19/25 (76%)
Query: 47 KLATCPFNARHQVPRAEISHHISSC 71
++ CP+++ H +P++ ++ H++SC
Sbjct: 54 EVVICPYDSNHHMPKSSLAKHMASC 78
>gi|157364947 ecotropic viral integration site 1 isoform a [Homo
sapiens]
Length = 1115
Score = 30.4 bits (67), Expect = 0.74
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 1 MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVAS-------------- 46
+EE + L+ E LQ + H I+ C+ +C + PD+ S
Sbjct: 118 VEEDFQQKLESENDLQ----EIHTIQECK------ECDQVFPDLQSLEKHMLSHTEEREY 167
Query: 47 KLATCP--FNARHQVPRAEISHHISS---CDDRSCIEQDVVNQTRSLRQETLAESTWQCP 101
K CP FN + + R ++SH C++ + + D N R +R + + CP
Sbjct: 168 KCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACP 227
Query: 102 PC 103
C
Sbjct: 228 EC 229
>gi|157364945 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 30.4 bits (67), Expect = 0.74
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 1 MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVAS-------------- 46
+EE + L+ E LQ + H I+ C+ +C + PD+ S
Sbjct: 54 VEEDFQQKLESENDLQ----EIHTIQECK------ECDQVFPDLQSLEKHMLSHTEEREY 103
Query: 47 KLATCP--FNARHQVPRAEISHHISS---CDDRSCIEQDVVNQTRSLRQETLAESTWQCP 101
K CP FN + + R ++SH C++ + + D N R +R + + CP
Sbjct: 104 KCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACP 163
Query: 102 PC 103
C
Sbjct: 164 EC 165
>gi|157364943 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 30.4 bits (67), Expect = 0.74
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 1 MEETYTDSLDPEKLLQCPYDKNHQIRACRFPYHLIKCRKNHPDVAS-------------- 46
+EE + L+ E LQ + H I+ C+ +C + PD+ S
Sbjct: 54 VEEDFQQKLESENDLQ----EIHTIQECK------ECDQVFPDLQSLEKHMLSHTEEREY 103
Query: 47 KLATCP--FNARHQVPRAEISHHISS---CDDRSCIEQDVVNQTRSLRQETLAESTWQCP 101
K CP FN + + R ++SH C++ + + D N R +R + + CP
Sbjct: 104 KCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACP 163
Query: 102 PC 103
C
Sbjct: 164 EC 165
>gi|4557241 actinin, alpha 3 [Homo sapiens]
Length = 901
Score = 30.0 bits (66), Expect = 0.96
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 104 DEDWDKDL-----WE--QTSTPFVWGTTHYSDNNSPASNIVTEHKNNL--------ASGM 148
+EDWD+DL WE Q T W +H + NI + +N L SG
Sbjct: 30 EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGE 89
Query: 149 RVPK 152
R+P+
Sbjct: 90 RLPR 93
>gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
Length = 481
Score = 28.5 bits (62), Expect = 2.8
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 45 ASKLATCPFNARHQVPRAEISHHISSCDDRSCIEQDVVNQ--TRSLRQET 92
A K CP + +H V +++ H+ C+ R + D Q LR ET
Sbjct: 53 ARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDET 102
>gi|145701028 hypothetical protein LOC55471 isoform 3 [Homo sapiens]
Length = 343
Score = 28.1 bits (61), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 114 QTSTPFVWGTTHYSDNNSPASNIVT 138
+ + PF+W ++S N PA N VT
Sbjct: 17 RAAIPFIWRGKYFSSGNEPAENPVT 41
>gi|21396487 hypothetical protein LOC55471 isoform 1 [Homo sapiens]
Length = 441
Score = 28.1 bits (61), Expect = 3.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 114 QTSTPFVWGTTHYSDNNSPASNIVT 138
+ + PF+W ++S N PA N VT
Sbjct: 17 RAAIPFIWRGKYFSSGNEPAENPVT 41
>gi|55749557 seven in absentia homolog 1 isoform b [Homo sapiens]
Length = 313
Score = 27.3 bits (59), Expect = 6.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 109 KDLWEQTSTPFVWGTTHYSDNNS-PASNIVTEHKNNLASGMRVPKSLPYVLP 159
K++ QT+T GT+ + PA T N+LAS P YVLP
Sbjct: 30 KEMSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLP 81
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 26.9 bits (58), Expect = 8.1
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 16 QCPYDKNHQIRACRFPYHLIKCRKNHPDVASKLATCPFNARHQVPRAEISHHISSC 71
+CP +++ R CR P + +H TC + ++PR + H+ +C
Sbjct: 155 ECP-ERSLSCRHCRAPCCGADVKAHHEVCPKFPLTCDGCGKKKIPREKFQDHVKTC 209
>gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]
Length = 887
Score = 26.9 bits (58), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 104 DEDWDKDL-----WE--QTSTPFVWGTTHYSDNNSPASNIVTEHKNNL 144
+EDWD+DL WE Q T W +H + NI + ++ L
Sbjct: 16 EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 63
>gi|194097350 actinin, alpha 1 isoform a [Homo sapiens]
Length = 914
Score = 26.9 bits (58), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 104 DEDWDKDL-----WE--QTSTPFVWGTTHYSDNNSPASNIVTEHKNNL 144
+EDWD+DL WE Q T W +H + NI + ++ L
Sbjct: 16 EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 63
>gi|4501891 actinin, alpha 1 isoform b [Homo sapiens]
Length = 892
Score = 26.9 bits (58), Expect = 8.1
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 104 DEDWDKDL-----WE--QTSTPFVWGTTHYSDNNSPASNIVTEHKNNL 144
+EDWD+DL WE Q T W +H + NI + ++ L
Sbjct: 16 EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 63
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 26.9 bits (58), Expect = 8.1
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 25/110 (22%)
Query: 43 DVASKLATCPFNARHQVPRAEISHHISSCDDRSCIEQDVVNQTRSLRQETLAES------ 96
DV + C + ++ SS + + ++++ R + Q+ LA+S
Sbjct: 856 DVEWAVLKCRLEQLEEKTENKLGELGSSAESKGALKKE-----REVHQKLLADSHSLVMD 910
Query: 97 -TWQCPPCDEDW-------------DKDLWEQTSTPFVWGTTHYSDNNSP 132
WQ +++W D+ WE+ F+W NSP
Sbjct: 911 LRWQIHHSEKNWNREKVELLDRLDRDRQEWERQKKEFLWRIEQLQKENSP 960
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,590,537
Number of Sequences: 37866
Number of extensions: 332107
Number of successful extensions: 796
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 21
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.