Search of human proteins with 113416816

Search of human proteins with 113416816

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c
reductase binding protein [Homo sapiens]
         (111 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reduct...   234   1e-62
gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reduct...   234   1e-62
gi|5454152 ubiquinol-cytochrome c reductase binding protein [Hom...   216   3e-57
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 32   0.14 
gi|7705897 kynurenine aminotransferase II [Homo sapiens]               30   0.42 
gi|33469970 kynurenine aminotransferase II [Homo sapiens]              30   0.42 
gi|169171516 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|169171911 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|169170651 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Ho...    30   0.42 
gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]         29   0.71 
gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]         29   0.71 
gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]         29   0.71 
gi|4826870 nucleobindin 2 [Homo sapiens]                               29   0.92 
gi|33620755 YEATS domain containing 2 [Homo sapiens]                   29   0.92 
gi|147903302 MAP7 domain containing 3 [Homo sapiens]                   28   1.2  
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap...    28   1.6  
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi...    28   1.6  
gi|118498352 M-phase phosphoprotein 6 [Homo sapiens]                   28   1.6  
gi|55956786 spindle assembly associated Sfi1 homolog isoform a [...    28   2.1  
gi|55956784 spindle assembly associated Sfi1 homolog isoform b [...    28   2.1  
gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]         27   2.7  
gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo s...    27   2.7  
gi|110349719 titin isoform N2-A [Homo sapiens]                         27   3.5  
gi|197927265 RNA (guanine-9-) methyltransferase domain containin...    27   3.5  
gi|197927261 RNA (guanine-9-) methyltransferase domain containin...    27   3.5  
gi|22748659 RNA (guanine-9-) methyltransferase domain containing...    27   3.5  
gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform...    27   4.6  
gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform...    27   4.6  
gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform...    27   4.6  

>gi|113417284 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score =  234 bits (596), Expect = 1e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60
           MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60

Query: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR
Sbjct: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111


>gi|113416816 PREDICTED: similar to ubiquinol-cytochrome c reductase
           binding protein [Homo sapiens]
          Length = 111

 Score =  234 bits (596), Expect = 1e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60
           MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60

Query: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR
Sbjct: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111


>gi|5454152 ubiquinol-cytochrome c reductase binding protein [Homo
           sapiens]
          Length = 111

 Score =  216 bits (550), Expect = 3e-57
 Identities = 100/111 (90%), Positives = 108/111 (97%)

Query: 1   MAGKKAVAASGKWLDGIRKWYYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRM 60
           MAGK+AV+ASGKWLDGIRKWYYNA GFNKLGLM+DDTIYE+EDVKEAIRRLPENLYNDRM
Sbjct: 1   MAGKQAVSASGKWLDGIRKWYYNAAGFNKLGLMRDDTIYEDEDVKEAIRRLPENLYNDRM 60

Query: 61  FHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           F +KRALDL++KHQILPKEQWTKYEEENFYLEPYLKEVIRERKER EWAK+
Sbjct: 61  FRIKRALDLNLKHQILPKEQWTKYEEENFYLEPYLKEVIRERKEREEWAKK 111


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 20/85 (23%), Positives = 42/85 (49%)

Query: 27   FNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEE 86
            +NK+   K++   EN+++K  I+RL   L    +   K++L   ++ ++   E   + + 
Sbjct: 1833 YNKILREKEEIDQENDELKRQIKRLTSGLQGKPLTDNKQSLIEELQRKVKKLENQLEGKV 1892

Query: 87   ENFYLEPYLKEVIRERKERAEWAKR 111
            E   L+P  ++  +E   R E  K+
Sbjct: 1893 EEVDLKPMKEKNAKEELIRWEEGKK 1917



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)

Query: 28  NKLGLMKDDTIYENEDVKEAIRRLPENLYNDRMF----HMKRALDLSMKHQILPKEQWTK 83
           NKL L   D + ENE ++E +   P+ + +   F    H+K+      ++QIL KE    
Sbjct: 487 NKLELKISDFLDENEALRERVGLEPKTMIDLTEFRNSKHLKQQ-QYRAENQILLKE-IES 544

Query: 84  YEEENFYLEPYLKEVIRERKERA 106
            EEE   L+  ++++ +ER +R+
Sbjct: 545 LEEERLDLKKKIRQMAQERGKRS 567


>gi|7705897 kynurenine aminotransferase II [Homo sapiens]
          Length = 425

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7   VAASGKWLDGIRKWYYNATG----FNKLGLMKDDTIYENEDVKEAIRRLPENLY 56
           +AA+ KWL G+ +W+  A G        G+     + E + VK  +  LP N +
Sbjct: 334 LAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387


>gi|33469970 kynurenine aminotransferase II [Homo sapiens]
          Length = 425

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 7   VAASGKWLDGIRKWYYNATG----FNKLGLMKDDTIYENEDVKEAIRRLPENLY 56
           +AA+ KWL G+ +W+  A G        G+     + E + VK  +  LP N +
Sbjct: 334 LAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387


>gi|169171516 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 55  LYNDRMFHMKRALDLSMKHQIL 76
           LYNDR  + K  +DLSM +QIL
Sbjct: 84  LYNDRAVYAKTVMDLSMTYQIL 105


>gi|169171911 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 55  LYNDRMFHMKRALDLSMKHQIL 76
           LYNDR  + K  +DLSM +QIL
Sbjct: 84  LYNDRAVYAKTVMDLSMTYQIL 105


>gi|169170651 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 55  LYNDRMFHMKRALDLSMKHQIL 76
           LYNDR  + K  +DLSM +QIL
Sbjct: 84  LYNDRAVYAKTVMDLSMTYQIL 105


>gi|117956403 rabaptin, RAB GTPase binding effector protein 2 [Homo
           sapiens]
          Length = 569

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 73  HQILPKEQWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           +Q++P  QW + + E   L+  L+ V RER E  E  +R
Sbjct: 284 YQLVPDTQWEQLQTEGRQLQKDLESVSRERDELQEGLRR 322


>gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]
          Length = 900

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 69  LSMKHQILPKEQWTKYEEENFYLEPYL-KEVIRERKERAEWAK 110
           L  K + LP E+W  YEE +   E Y+ K  ++E +ER    K
Sbjct: 559 LLQKEEELPDERWMSYEERHLLDELYITKRRLKEIEERLHGLK 601


>gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]
          Length = 879

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 69  LSMKHQILPKEQWTKYEEENFYLEPYL-KEVIRERKERAEWAK 110
           L  K + LP E+W  YEE +   E Y+ K  ++E +ER    K
Sbjct: 566 LLQKEEELPDERWMSYEERHLLDELYITKRRLKEIEERLHGLK 608


>gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]
          Length = 872

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 69  LSMKHQILPKEQWTKYEEENFYLEPYL-KEVIRERKERAEWAK 110
           L  K + LP E+W  YEE +   E Y+ K  ++E +ER    K
Sbjct: 559 LLQKEEELPDERWMSYEERHLLDELYITKRRLKEIEERLHGLK 601


>gi|4826870 nucleobindin 2 [Homo sapiens]
          Length = 420

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 43  DVKEAIRRLPENLYN------DRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLK 96
           +++E   R+ E++ N      DR+  ++  L  + K + L  + W   +++ F+ E  LK
Sbjct: 289 EMEEERLRMREHVMNEVDTNKDRLVTLEEFLKATEKKEFLEPDSWETLDQQQFFTEEELK 348

Query: 97  E 97
           E
Sbjct: 349 E 349


>gi|33620755 YEATS domain containing 2 [Homo sapiens]
          Length = 1422

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 35   DDTIYENEDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEP 93
            D+   + ED+++  +R PEN     +  +   + +++K     KEQ  K EE  FYL P
Sbjct: 1271 DNLCRKLEDLQQFQKREPENEEEVDILSLSEPVKINIK-----KEQEEKQEEVKFYLPP 1324


>gi|147903302 MAP7 domain containing 3 [Homo sapiens]
          Length = 876

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 51  LPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAE 107
           + + L  +R    +R  D + + Q+L KE+ TK + E    E   K  ++ERKE+ E
Sbjct: 67  IKQRLARERREEKRRQQDANKETQLLEKERKTKLQYEKQMEERQRK--LKERKEKEE 121


>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
           sapiens]
          Length = 603

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 49  RRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERK----- 103
           ++ P+   +     +KR L+ S++ QIL K   T+ +E        LKEV  ER      
Sbjct: 184 KKKPDGFSSRSKALLKRQLEQSIREQILLKGHVTQLKES-------LKEVQLERDQYAEQ 236

Query: 104 ---ERAEWAKR 111
              ERA+W +R
Sbjct: 237 IKGERAQWQQR 247


>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
           sapiens]
          Length = 603

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 49  RRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRERK----- 103
           ++ P+   +     +KR L+ S++ QIL K   T+ +E        LKEV  ER      
Sbjct: 184 KKKPDGFSSRSKALLKRQLEQSIREQILLKGHVTQLKES-------LKEVQLERDQYAEQ 236

Query: 104 ---ERAEWAKR 111
              ERA+W +R
Sbjct: 237 IKGERAQWQQR 247


>gi|118498352 M-phase phosphoprotein 6 [Homo sapiens]
          Length = 160

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 50 RLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLE-PYLKE 97
          RL +NL   RM  M+R LD   K Q L +E+     EE++YL+ P LKE
Sbjct: 8  RLSKNLL--RMKFMQRGLDSETKKQ-LEEEEKKIISEEHWYLDLPELKE 53


>gi|55956786 spindle assembly associated Sfi1 homolog isoform a
           [Homo sapiens]
          Length = 1242

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 63  MKRALDLS-MKHQILPKE--QWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           + RAL  S +KH+ L  +   W+++ E+  Y++   ++V+   K    W KR
Sbjct: 236 VSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKHHQHWQKR 287


>gi|55956784 spindle assembly associated Sfi1 homolog isoform b
           [Homo sapiens]
          Length = 1211

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 63  MKRALDLS-MKHQILPKE--QWTKYEEENFYLEPYLKEVIRERKERAEWAKR 111
           + RAL  S +KH+ L  +   W+++ E+  Y++   ++V+   K    W KR
Sbjct: 236 VSRALHASALKHRALSLQVQAWSQWREQLLYVQKEKQKVVSAVKHHQHWQKR 287


>gi|41327691 kinesin-like motor protein C20orf23 [Homo sapiens]
          Length = 1317

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 44  VKEAIRRLPENLYNDRM--FHMKRALDLSMKHQI-------LPKEQWTKYEEENFYLEPY 94
           V+E ++RL E   N++   F + + LD   K +        L K++  + E+E   L  +
Sbjct: 705 VQEELQRLKELNNNEKAEKFQIFQELDQLQKEKDEQYAKLELEKKRLEEQEKEQVMLVAH 764

Query: 95  LKEVIRERKERAEWAKR 111
           L+E +RE++E  +  +R
Sbjct: 765 LEEQLREKQEMIQLLRR 781


>gi|33457330 tetratricopeptide repeat domain 14 isoform a [Homo
           sapiens]
          Length = 770

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 12/86 (13%)

Query: 21  YYNATGFNKLGLMKDDTIYENEDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQ 80
           + NA  + K  L  D+T  + ED  + + +           +M+++L+L  K     ++Q
Sbjct: 398 FLNAESYYKKALALDETFKDAEDALQKLHK-----------YMQKSLELREKQAEKEEKQ 446

Query: 81  WT-KYEEENFYLEPYLKEVIRERKER 105
            T K E     L   LKE  R +K+R
Sbjct: 447 KTKKIETSAEKLRKLLKEEKRLKKKR 472


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 72   KHQILPKEQWTKYEEENFYLEPYLKEVIRERKERAE 107
            +H++  +E+W+  EEE        +E  RE +E AE
Sbjct: 9486 RHEVSAEEEWSYSEEEEGVSISVYREEEREEEEEAE 9521


>gi|197927265 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 32  LMKDDTIYENEDVKEAIRRLPENLYN------DRMFHM----KRALDLSMKHQILPKEQW 81
           + K+D IY   D    ++ L E+         D   H     K+A D  + H  LP   +
Sbjct: 178 IKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNF 237

Query: 82  TKYEEENFYLEPYLKEVIRERKERAEW 108
            K          ++ E+I E  E  +W
Sbjct: 238 VKMNSRKVLAVNHVFEIILEYLETRDW 264


>gi|197927261 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 32  LMKDDTIYENEDVKEAIRRLPENLYN------DRMFHM----KRALDLSMKHQILPKEQW 81
           + K+D IY   D    ++ L E+         D   H     K+A D  + H  LP   +
Sbjct: 178 IKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNF 237

Query: 82  TKYEEENFYLEPYLKEVIRERKERAEW 108
            K          ++ E+I E  E  +W
Sbjct: 238 VKMNSRKVLAVNHVFEIILEYLETRDW 264


>gi|22748659 RNA (guanine-9-) methyltransferase domain containing 2
           [Homo sapiens]
          Length = 339

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 32  LMKDDTIYENEDVKEAIRRLPENLYN------DRMFHM----KRALDLSMKHQILPKEQW 81
           + K+D IY   D    ++ L E+         D   H     K+A D  + H  LP   +
Sbjct: 178 IKKEDLIYLTSDSPNILKELDESKAYVIGGLVDHNHHKGLTYKQASDYGINHAQLPLGNF 237

Query: 82  TKYEEENFYLEPYLKEVIRERKERAEW 108
            K          ++ E+I E  E  +W
Sbjct: 238 VKMNSRKVLAVNHVFEIILEYLETRDW 264


>gi|253735700 5-hydroxytryptamine (serotonin) receptor 3A isoform b
           precursor [Homo sapiens]
          Length = 484

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 42  EDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRE 101
           +D+  ++ RLPE + +DR   M +     +   +LP  +    E  N+Y E     VIR 
Sbjct: 189 QDINISLWRLPEKVKSDRSVFMNQGEWELL--GVLPYFREFSMESSNYYAEMKFYVVIRR 246

Query: 102 R 102
           R
Sbjct: 247 R 247


>gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform a
           precursor [Homo sapiens]
          Length = 516

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 42  EDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRE 101
           +D+  ++ RLPE + +DR   M +     +   +LP  +    E  N+Y E     VIR 
Sbjct: 189 QDINISLWRLPEKVKSDRSVFMNQGEWELL--GVLPYFREFSMESSNYYAEMKFYVVIRR 246

Query: 102 R 102
           R
Sbjct: 247 R 247


>gi|253735691 5-hydroxytryptamine (serotonin) receptor 3A isoform c
           [Homo sapiens]
          Length = 463

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 42  EDVKEAIRRLPENLYNDRMFHMKRALDLSMKHQILPKEQWTKYEEENFYLEPYLKEVIRE 101
           +D+  ++ RLPE + +DR   M +     +   +LP  +    E  N+Y E     VIR 
Sbjct: 168 QDINISLWRLPEKVKSDRSVFMNQGEWELL--GVLPYFREFSMESSNYYAEMKFYVVIRR 225

Query: 102 R 102
           R
Sbjct: 226 R 226


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,337,797
Number of Sequences: 37866
Number of extensions: 170827
Number of successful extensions: 566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 49
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.