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Search of human proteins with 113415498
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113415498 PREDICTED: similar to ribonucleic acid binding
protein S1 [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 604 e-173
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 604 e-173
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 604 e-173
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 604 e-173
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 601 e-172
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 601 e-172
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 589 e-168
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 589 e-168
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 88 8e-18
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 80 2e-15
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 80 2e-15
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 78 9e-15
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 78 9e-15
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 77 1e-14
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 76 4e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 75 7e-14
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 75 7e-14
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 74 1e-13
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 74 2e-13
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 72 5e-13
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens] 70 2e-12
gi|9558733 transformer-2 alpha [Homo sapiens] 70 2e-12
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 69 4e-12
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 68 1e-11
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 68 1e-11
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 68 1e-11
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 67 2e-11
gi|55741677 SET domain containing 1A [Homo sapiens] 67 2e-11
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 67 3e-11
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 67 3e-11
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 604 bits (1557), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 604 bits (1557), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 604 bits (1557), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 604 bits (1557), Expect = e-173
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 601 bits (1549), Expect = e-172
Identities = 304/305 (99%), Positives = 304/305 (99%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 601 bits (1549), Expect = e-172
Identities = 304/305 (99%), Positives = 304/305 (99%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSSQ
Sbjct: 301 SNSSQ 305
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 589 bits (1518), Expect = e-168
Identities = 299/305 (98%), Positives = 300/305 (98%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSS+
Sbjct: 301 SNSSR 305
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 589 bits (1518), Expect = e-168
Identities = 299/305 (98%), Positives = 300/305 (98%)
Query: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1 MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61 KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
Query: 301 SNSSQ 305
SNSS+
Sbjct: 301 SNSSR 305
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 88.2 bits (217), Expect = 8e-18
Identities = 60/121 (49%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
S K+K RS+ +G R R+KT K S SS SSS+ S S+S+SS SS+S SS
Sbjct: 552 SKSKTKTRSRSRG---------RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSS 602
Query: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
S SSSSS+SS SGSSS SSS+SSSS S S SR R NR R +S KR + R
Sbjct: 603 SRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLER 662
Query: 155 S 155
S
Sbjct: 663 S 663
Score = 78.6 bits (192), Expect = 7e-15
Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 49 TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
T K + + ++R R A + +S +RSRSSS+SSS SS+ST SSSGSSSSS SS S S
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSS-SSSSTSSSSGSSSSSGSSSSRS 605
Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEK-----ERKRRSPS 157
SS+S SSS+S SS S S + RSRS+ + RD K +RKRR S
Sbjct: 606 SSSS-SSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS 658
Score = 62.4 bits (150), Expect = 5e-10
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 27 SPTKRKDRSDEKSKDRSK-DKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSS 85
S +K K RS + + R+K K ++ SS T +SS S S+ SRSSS+SSS
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSS 611
Query: 86 GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPK 145
S+SGSSS +SS + SSS SRS S RR D +RR S
Sbjct: 612 -------STSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS-----G 659
Query: 146 RDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
+ + + S + TK + +R+ K I E
Sbjct: 660 LERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISE 693
Score = 58.9 bits (141), Expect = 5e-09
Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 32/157 (20%)
Query: 27 SPTKRKDRSDEKSKDR-SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSS 85
S TK + RS +++++ SK + + SS + S+SSGSSS+RS SSS+SS+
Sbjct: 554 SKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613
Query: 86 GSSTSTGSSSGSSSSSASSRSGS----------------------SSTSRSSSSSSSSGS 123
S+S SSS S+SSS+ SRS S S RS SS S
Sbjct: 614 SGSSSRDSSS-STSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSS 672
Query: 124 PSPSRRRHDNRRRSRSKS--------KPPKRDEKERK 152
+ N R R +S K R E++RK
Sbjct: 673 RDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRK 709
Score = 48.5 bits (114), Expect = 7e-06
Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
S S G ++ SS+R+ S + S S+D S ++ ES + RGR R
Sbjct: 584 SSSSTSSSSGSSSSSGSSSSRSSSSSS-SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR 642
Query: 64 KRHSASSGSSSTR-----SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
R S R RS +S GSS T S +S S RS S S SRS S
Sbjct: 643 DRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISES-SRSGKRS 701
Query: 119 SSSGSPSPSRRRHDNRR 135
S S S R+ D RR
Sbjct: 702 SRSERDRKSDRK-DKRR 717
Score = 47.4 bits (111), Expect = 2e-05
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGAT--KESSEKDRGRDKTRKRHSASSGS 72
+ KS +R+ S + S S S G++ + SS + R S+SS S
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTS 626
Query: 73 SSTRSRSSSTSSSGS---------STSTGSSSGSSSSSASSRSGSSSTSRSS--SSSSSS 121
SS+ SRS S + +SG S SS+ GSS ++ S +S S
Sbjct: 627 SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD 686
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKR 153
S S +R SRS+ + K D K+++R
Sbjct: 687 RKRSISESSRSGKRSSRSE-RDRKSDRKDKRR 717
Score = 33.9 bits (76), Expect = 0.18
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 232 EITATVVLAPWPRPTPRR--FSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
E + VL P P+ T + P R+ P + L P + P +S + RSRS
Sbjct: 503 EDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRS 562
Query: 290 PGRRRH-----RSRSSSNSS 304
GR R+ RSRSSS+SS
Sbjct: 563 RGRARNKTSKSRSRSSSSSS 582
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 24/187 (12%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
+TR P K RS + + + + + RGR+ S SSGS+ T SSS
Sbjct: 1388 NTRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNS----RSVSSGSNRTSEASSS 1443
Query: 82 TSSSGSST--------------------STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
+SSS SS+ S+G S SSSS+SS S SSS+S SSSS S S
Sbjct: 1444 SSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRS 1503
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
SPSP RR RR S +S + ++ ++ + V IG++ +T+ + + F
Sbjct: 1504 RSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRF 1563
Query: 182 STYGKIK 188
S +G+I+
Sbjct: 1564 SVFGEIE 1570
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/33 (51%), Positives = 17/33 (51%)
Query: 266 SPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSR 298
S R R RS SPRRRS RRR S H R
Sbjct: 1497 SSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQR 1529
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 80.5 bits (197), Expect = 2e-15
Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)
Query: 71 GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
G +RS S S S+ GS S T + S S S SRS S S S S S S S +
Sbjct: 10 GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69
Query: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172
R R +R RS+S+ RD + R S SP T + H+G L+
Sbjct: 70 RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129
Query: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232
T+ + E+FS YG I + + V S+G+A V FEN D+A++A + +G ++DG+
Sbjct: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188
Query: 233 ITATVVLAPWPR-PTP 247
I + P PTP
Sbjct: 189 IRVDFSITKRPHTPTP 204
Score = 33.5 bits (75), Expect = 0.24
Identities = 20/37 (54%), Positives = 20/37 (54%)
Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
RS R RSR RR R RSRS RR RSRS S
Sbjct: 51 RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 78.2 bits (191), Expect = 9e-15
Identities = 97/324 (29%), Positives = 118/324 (36%), Gaps = 86/324 (26%)
Query: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG--- 58
D + K L + K R+P+ K K KSKDR K ES +DRG
Sbjct: 234 DQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSP-IINESRSRDRGKKS 292
Query: 59 ------RDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
R K++ R S S S RS + S S +SSG + S S R G S
Sbjct: 293 RSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKR 352
Query: 113 RSSS-----SSSSSGSP-----------SPSRRRHDNRRRSRSKSKPPKRDEKERKR-RS 155
RS S S S SP SPSR RR++S+S KR E ER+R S
Sbjct: 353 RSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPG-RRAKSRSLERKRREPERRRLSS 411
Query: 156 PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDE 215
P +P + R R +KD P+ R P + +
Sbjct: 412 PRTRPRDDILSR--RERSKD---------------ASPINRWSPTRRRSRS--------- 445
Query: 216 AEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSR 275
P RR P R P RSP RRR R
Sbjct: 446 -----------------------------PIRRRSRSPLRRSRSPRRRSRSP---RRRDR 473
Query: 276 SPRRRSPVRRRSRSPGRRRHRSRS 299
R RS +RRRSRS G RR RSRS
Sbjct: 474 GRRSRSRLRRRSRSRGGRRRRSRS 497
Score = 65.9 bits (159), Expect = 4e-11
Identities = 82/320 (25%), Positives = 130/320 (40%), Gaps = 60/320 (18%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
KK+S KE + S + S + ++ ++ +SK++ +K S++ + +D+ RK
Sbjct: 181 KKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARK-- 238
Query: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S S + R RS S + S + R S + S S S SP
Sbjct: 239 ---SKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSP 295
Query: 127 SRRRHDNR-RRSRSKSKPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTY 184
R ++ RRSRSK + KR E +++++ P P+K G+ R+ ++
Sbjct: 296 VDLRGKSKDRRSRSKERKSKRSETDKEKK-PIKSPSKDASSGKENRSPSR---------- 344
Query: 185 GKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPR 244
P S + + D++ ++ + + Q + + L+P R
Sbjct: 345 -------------RPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRR 391
Query: 245 PTPR-----RFSPPRRMLPPPPMWLRSPPR---MRRRSRSP-------------RRRSPV 283
R R P RR L P R+ PR + RR RS R RSP+
Sbjct: 392 AKSRSLERKRREPERRRLSSP----RTRPRDDILSRRERSKDASPINRWSPTRRRSRSPI 447
Query: 284 RRRSRSPGRR----RHRSRS 299
RRRSRSP RR R RSRS
Sbjct: 448 RRRSRSPLRRSRSPRRRSRS 467
Score = 59.3 bits (142), Expect = 4e-09
Identities = 71/273 (26%), Positives = 107/273 (39%), Gaps = 33/273 (12%)
Query: 46 KGATKESSEKDRGRDKTRKRHSASSGSSSTRSR---------SSSTSSSGSSTSTGSSSG 96
+G S E+ +K R + +S+ SSST+ + + S S S T S
Sbjct: 138 QGYESGSEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSD 197
Query: 97 SSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
S T+RS S S SPS + D R+S+S + + EK K RS
Sbjct: 198 KKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARS 257
Query: 156 PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFEN--- 212
P+ K+ +++ K I+ + + K PV+ + E ++
Sbjct: 258 PTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRS 317
Query: 213 -PDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMR 271
D+ +K +K G+E + P P R SP RR L P P
Sbjct: 318 ETDKEKKPIKSPSKDASSGKENRS-------PSRRPGR-SPKRRSLSP------KPRDKS 363
Query: 272 RRSRSPRRRSPVRRRSRSPGR-----RRHRSRS 299
RRSRSP ++S+SP R RR +SRS
Sbjct: 364 RRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRS 396
Score = 55.8 bits (133), Expect = 5e-08
Identities = 80/313 (25%), Positives = 122/313 (38%), Gaps = 51/313 (16%)
Query: 32 KDRSDEKSKDRSKDKGATKESSEKDR----GRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
++ + K R+ ++ +T+ SS K + T K+ S S TR RS S G
Sbjct: 145 EEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGG 204
Query: 88 STSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNRRRSR-------- 138
+ S S +S S S S+S + S SP+ RR + ++R
Sbjct: 205 IEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVK 264
Query: 139 ----SKSKPPKR-----DEKERKRRSPSPKPTKVH-IGRLTRNVTKDHIMEIFSTYGKIK 188
SKSK K+ + + R R S P + + R+ +K+ + T + K
Sbjct: 265 IEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKK 324
Query: 189 MIDMPVE-----------RMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
I P + P S + + D++ ++ + + Q + +
Sbjct: 325 PIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSR 384
Query: 238 VLAPWPRPTPR-----RFSPPRRMLPPPPMWLRSPPR---MRRRSRSP-----RRRSPVR 284
L+P R R R P RR L P R+ PR + RR RS R SP R
Sbjct: 385 TLSPGRRAKSRSLERKRREPERRRLSSP----RTRPRDDILSRRERSKDASPINRWSPTR 440
Query: 285 RRSRSPGRRRHRS 297
RRSRSP RRR RS
Sbjct: 441 RRSRSPIRRRSRS 453
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/132 (31%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
Query: 15 KENNKKSSTRAPSPTKR-KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSS 73
+ KS +R SP +R K RS E+ + ++ + SS + R RD R S +S
Sbjct: 375 RSKQSKSPSRTLSPGRRAKSRSLERKR---REPERRRLSSPRTRPRDDILSRRERSKDAS 431
Query: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
S + S S S S S + R S R S S SR R
Sbjct: 432 PINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGR 491
Query: 134 RRRSRSKSKPPK 145
RRRSRSK K K
Sbjct: 492 RRRSRSKVKEDK 503
Score = 33.9 bits (76), Expect = 0.18
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 4/173 (2%)
Query: 8 KKSLLGVKENNKKSST-RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
+ +L +E +K +S SPT+R+ RS + + RS + + R + R R
Sbjct: 417 RDDILSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRR 476
Query: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S S +RSR S S GS S SSS +
Sbjct: 477 SRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSS---DDNLEDFDVEEED 533
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
+ RR R + E S +P+ TR+ + D I+E
Sbjct: 534 EEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILE 586
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 78.2 bits (191), Expect = 9e-15
Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRS 77
K+++T P + + D + +S K K S + R R KT +++S SS + S
Sbjct: 500 KEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSS 559
Query: 78 RSSSTSSSGSSTSTG-SSSGSSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRR 135
RSSS S SGSS S SSS SS SS SSR S S SRS S S SSS SPSP+ H
Sbjct: 560 RSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSI 619
Query: 136 RSRSKSKPP--KRDEKERKRRSPSPKP 160
R++ + PP K EK K+ +P P P
Sbjct: 620 RTKGEPAPPPGKAGEKSVKKPAPPPAP 646
Score = 59.7 bits (143), Expect = 3e-09
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 17/159 (10%)
Query: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
VKK + K++ P PTK D + + K+R + R +T
Sbjct: 637 VKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPA----------RTPPRRRTLSG 686
Query: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS--SSSSSGS 123
+ SGSS + S S S S S SS S+ SS+ SSSSSA S + +S SS+SS S
Sbjct: 687 SGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRS 746
Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
P+P++ R+ + KSK ++E+++R S +P K
Sbjct: 747 PAPAQ-----TRKEKGKSKKEDGVKEEKRKRDSSTQPPK 780
Score = 55.5 bits (132), Expect = 6e-08
Identities = 48/147 (32%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 31 RKDRSDEKSKDRSKDKGATKESSEKDRGRD-KTRKRHSASSGSSSTRS--------RSSS 81
R+ R ++ K+R K+KG K S + R + K+ +A++G R+ RS S
Sbjct: 465 RQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKS 524
Query: 82 TSSS-GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD------NR 134
G S S + +SASS S S+S+ SS SSS SGS S R +
Sbjct: 525 PKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSS 584
Query: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT 161
R SR S R SPSP PT
Sbjct: 585 RSSRHSSFSGSRSRSRSFSSSPSPSPT 611
Score = 37.7 bits (86), Expect = 0.013
Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
+S+R+P+P + + K K +SK + KE K + K +G S++ S+
Sbjct: 742 ASSRSPAPAQTR-----KEKGKSKKEDGVKEEKRKRDSSTQPPKSAKPPAGGKSSQQPST 796
Query: 81 STSSSGSSTSTGSS-----------SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
+ G+ + ++ + R S R S + + SP R
Sbjct: 797 PQQAPPGQPQQGTFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPPAKRPNTSPDRG 856
Query: 130 RHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
D + R S P+R + + +P K + +++ +K
Sbjct: 857 SRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSK 901
Score = 35.8 bits (81), Expect = 0.048
Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 22/305 (7%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
N ++ ++++R E+ +DR +++ + E++ RDK R+R R
Sbjct: 400 NYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE--WERER 457
Query: 77 SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
++ RS + ++ + + P +R D +
Sbjct: 458 AKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKD 517
Query: 137 SRSKSKPPKR--------DEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
+SK PK+ R+R++ + + + R + + + +
Sbjct: 518 PWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSS 577
Query: 189 MIDMPVERMHPHL----SKGYACVEFENPDEAEKALKHMDGGQIDGQ------EITATVV 238
R H S+ + +P + H + G+ + V
Sbjct: 578 SYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSV 637
Query: 239 LAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSR 298
P P P P + + +P P PR RR P R P RR G S
Sbjct: 638 KKPAPPPAPPQATKTTAPVPEPTK--PGDPREARRKERPARTPPRRRTLSGSGSGSGSSY 695
Query: 299 SSSNS 303
S S+S
Sbjct: 696 SGSSS 700
Score = 33.5 bits (75), Expect = 0.24
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 244 RPTPRRFSPPRRMLPPPPMWLRSP-PRMRR---------RSRSPRRRSPVRRRSRSPGRR 293
+P PR PP R PP + P+++R RS+SP+++ V S SP R
Sbjct: 482 KPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGV---SVSPSRA 538
Query: 294 RHRSRSSSNSS 304
R R ++S++S+
Sbjct: 539 RRRRKTSASSA 549
Score = 32.0 bits (71), Expect = 0.70
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 32 KDRSDEKSKDRSKDKGATKESSEKDRGR--------------DKTRKRHSASSGSSSTRS 77
+ R + KDR A + ++ DRG ++ R ++S + + + R
Sbjct: 830 RKRYEPSDKDRQSPPPAKRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRK 889
Query: 78 RSSSTSSSGSSTSTG-SSSGSSSSSASSRSGSSST 111
R S S SS T S +AS++SG +ST
Sbjct: 890 RQLSPQSKSSSKVTSVPGKASDPGAASTKSGKAST 924
Score = 28.9 bits (63), Expect = 5.9
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%)
Query: 29 TKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSS 88
T+ + + + ++R +++ + E++R RD+ R+R R
Sbjct: 393 TETEPYHNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE 452
Query: 89 TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP--PKR 146
+ SP P R+ + ++ + + P +
Sbjct: 453 WERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRA 512
Query: 147 DE-KERKRRSPSPK 159
DE K+ RRS SPK
Sbjct: 513 DEWKDPWRRSKSPK 526
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 77.4 bits (189), Expect = 1e-14
Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 8/145 (5%)
Query: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKAL 220
T + + LT + D + +F YG++ + +P +R + S+G+A V F + +AE A+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAM 72
Query: 221 KHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRR 280
MDG +DG+E+ V +A + RP S R PPP + RRSRSPRRR
Sbjct: 73 DAMDGAVLDGRELR--VQMARYGRPPDSHHS---RRGPPPRRY--GGGGYGRRSRSPRRR 125
Query: 281 SPVRRRSRSPGRRRHRSRSSSNSSQ 305
R RSRS R R RSR S + S+
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSR 150
Score = 65.5 bits (158), Expect = 6e-11
Identities = 52/129 (40%), Positives = 67/129 (51%), Gaps = 13/129 (10%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
S R P P +R + RS + S + R R ++R R+S S S TRSRS S
Sbjct: 101 SRRGPPP-RRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159
Query: 82 TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141
TS S S+ + S SS+ SRS S S SRS S S P P +R +++ RSRSKS
Sbjct: 160 TSKSRSARRS-----KSKSSSVSRSRSRSRSRSRSRS-----PPPVSKR-ESKSRSRSKS 208
Query: 142 KPPKRDEKE 150
PPK E+E
Sbjct: 209 -PPKSPEEE 216
Score = 45.4 bits (106), Expect = 6e-05
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Query: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGS-------SSTR 76
R+ SP +R+ RS +S+ RS+ + ++ S K R R ++R R ++ S S SS+
Sbjct: 118 RSRSPRRRR-RSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSV 176
Query: 77 SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
SRS S S S S + + S + SRS S S + SS
Sbjct: 177 SRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221
Score = 40.4 bits (93), Expect = 0.002
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-RKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
G + +S + + +S +R+ S ++ R RS +S+ RS+ + +K S
Sbjct: 116 GRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRS---------- 165
Query: 64 KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
R S S SS +RSRS S S S S + S S S + S+S S + SS
Sbjct: 166 ARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221
Score = 39.7 bits (91), Expect = 0.003
Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
Query: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
G +S RG R+ G S R S S S + + S S S S + SRS
Sbjct: 93 GRPPDSHHSRRG-PPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Query: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
+ S SRS+S S S+ RRS+SKS R + RS S P V
Sbjct: 152 RTRSRSRSTSKSRSA-------------RRSKSKSSSVSRSRSRSRSRSRSRSPPPV 195
Score = 28.5 bits (62), Expect = 7.7
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 105 RSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
RS S R S S S S S S SR R+ SRSKS+ R +S S + +K
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRY-----SRSKSRSRTRSRSRSTSKSRSARRSKSK 172
Query: 165 IGRLTRN 171
++R+
Sbjct: 173 SSSVSRS 179
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 75.9 bits (185), Expect = 4e-14
Identities = 80/299 (26%), Positives = 117/299 (39%), Gaps = 39/299 (13%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDE--KSKDRSKDKGATKESSEKDRGRDKTR- 63
K +S + +KK +R+PS K + RS KS+ +SKD+ K + + G+ K+R
Sbjct: 231 KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS 290
Query: 64 -KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG 122
RH + S S S S S G S S + SRS S SRS S S S
Sbjct: 291 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSK- 349
Query: 123 SPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFS 182
S +R+ R R S+S+ R + ER R+ S + +K + + D
Sbjct: 350 --SKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDR------ 401
Query: 183 TYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPW 242
+ + + ER H + E E+E A + +
Sbjct: 402 SQSRSPSRSVSKEREHAKSESS----QREGRGESENAGTNQE------------------ 439
Query: 243 PRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
T R + P P RS + ++RS R +S R SRSP R R RS S S
Sbjct: 440 ---TRSRSRSNSKSKPNLPSESRSRSKSASKTRS-RSKSRSRSASRSPSRSRSRSHSRS 494
Score = 61.2 bits (147), Expect = 1e-09
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 13 GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGS 72
G + S +R+ S ++ + R KS+ RS G++K S K R R ++ R S S
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRS---GSSKSSHSKSRSRSRSGSR-SRSKSR 233
Query: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
S ++SRS S S S S S S+ SRS S + ++ + SR
Sbjct: 234 SRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSR 293
Query: 133 NRRRSRSKSKPPKRDEKERKRRSPS 157
++ +S+S+S+ +R +E KR S S
Sbjct: 294 HKSKSKSRSRSQERRVEEEKRGSVS 318
Score = 60.1 bits (144), Expect = 2e-09
Identities = 56/163 (34%), Positives = 74/163 (45%), Gaps = 32/163 (19%)
Query: 9 KSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSA 68
+ L G + N +K P R+ RS +S+ S R ++R RHS
Sbjct: 158 EKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHS---------------RSRSRSRHSR 202
Query: 69 SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS--P 126
S RSRS S+ SS S + + S SGS S S +S S S SRS S S SPS
Sbjct: 203 KS-----RSRSGSSKSSHSKSRSRSRSGSRSRS---KSRSRSQSRSRSKKEKSRSPSKEK 254
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKER-------KRRSPSPKPTK 162
SR R + +SRSKSK ++ + K RSPS +K
Sbjct: 255 SRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297
Score = 50.1 bits (118), Expect = 2e-06
Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
S KKK KE+ +S +R+PS + K+R KS+ ++ E++ G ++
Sbjct: 390 SSKKKK-----KEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENA----GTNQET 440
Query: 64 KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
+ S S+ S S S S S S++ T S S S S SAS RS S S SRS S S
Sbjct: 441 RSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS-RSPSRSRSRSHSRS 494
Score = 49.7 bits (117), Expect = 3e-06
Identities = 62/218 (28%), Positives = 89/218 (40%), Gaps = 35/218 (16%)
Query: 100 SSASSRSGSSSTSRS---------SSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD-EK 149
S + SRS S S SRS S SS SS S S SR R +R RS+S+S+ R K
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243
Query: 150 ERKRRSPSPKP--TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAC 207
+ K RSPS + ++ H +R+ +KD E + H SK +
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303
Query: 208 VEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP 267
+ +E ++ + G+ + + + R R R
Sbjct: 304 SQERRVEEEKRG--SVSRGRSQEKSLRQS-------RSRSRSKGGSR------------- 341
Query: 268 PRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSQ 305
R R RS+S +R R+RSR R R RSRS S S+
Sbjct: 342 SRSRSRSKSKDKRKG-RKRSREESRSRSRSRSKSERSR 378
Score = 42.7 bits (99), Expect = 4e-04
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%)
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
GS R + RR R K PP R E ++ + L+ + + +
Sbjct: 77 GSYGSGRSGYGYRRSGRDKYGPPTRTEY------------RLIVENLSSRCSWQDLKDYM 124
Query: 182 STYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAP 241
G++ D R K +EF + + ++AL+ +DG +++G++I
Sbjct: 125 RQAGEVTYADAHKGR------KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVE---- 174
Query: 242 WPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSP---VRRRSRSPGRRRHRSR 298
+P RR R RS + RSRS +S R RSRS R R +SR
Sbjct: 175 -DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR 233
Query: 299 SSSNS 303
S S S
Sbjct: 234 SRSQS 238
Score = 39.3 bits (90), Expect = 0.004
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALK 221
+V+IGRL+ + + F YGKI +D L GY VEF++ +A+ A+
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVD---------LKNGYGFVEFDDLRDADDAVY 53
Query: 222 HMDGGQIDGQEI 233
++G + G+ +
Sbjct: 54 ELNGKDLCGERV 65
Score = 37.7 bits (86), Expect = 0.013
Identities = 55/197 (27%), Positives = 74/197 (37%), Gaps = 28/197 (14%)
Query: 110 STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLT 169
S R S S S S S S SR RH + RSRS S + + RS S +K +
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQID 229
R+ +K K + R H S G + ++ D+AE+ +++ D
Sbjct: 239 RSRSKKE---------KSRSPSKEKSRSRSH-SAGKS--RSKSKDQAEEKIQNNDN---- 282
Query: 230 GQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPR---MRRRSRSPRRRSPVRRR 286
V P R R S + + R R RS+ R R R
Sbjct: 283 --------VGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQS-RSR 333
Query: 287 SRSPGRRRHRSRSSSNS 303
SRS G R RSRS S S
Sbjct: 334 SRSKGGSRSRSRSRSKS 350
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 75.1 bits (183), Expect = 7e-14
Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 3 LSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSK---DRSKDKGATKESSEKDRGR 59
L V+ K G +E+ + ++ + + SK D S+++ + K+ S + R R
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR-RSR 203
Query: 60 DKTRKRHSASSGSSST------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
K+R HS SS SS+ RSRS S SSS S + + SSS S S S+S SSS S
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH 263
Query: 114 SSSSSS-----SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPK 159
SSS SS S SP R NR+RSRS+S D K+R+ RS SP+
Sbjct: 264 RGSSSPRKRSYSSSSSSPER----NRKRSRSRSS-SSGDRKKRRTRSRSPE 309
Score = 63.9 bits (154), Expect = 2e-10
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-EKDRGR-DKTRKRHSASSGS 72
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS E+ R R K+R + GS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
Query: 73 SSTRSRSSSTSSSG------SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
SS R RS S+SSS S S SSSG + RSSS SS SGS S
Sbjct: 267 SSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSS 326
Query: 127 SRRR 130
S+++
Sbjct: 327 SKKK 330
Score = 60.8 bits (146), Expect = 1e-09
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
KKKS + +K S+ + S ++ S +S+ RS+ + + SS + R R +R+R
Sbjct: 195 KKKS--NRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSS---SSSQSRSRSSSRER- 248
Query: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S S ++SRSSS S GSS S S SSSSS+ R+ S SRSSSS +
Sbjct: 249 ---SRSRGSKSRSSSRSHRGSS-SPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERK 152
SR R S S R ++K
Sbjct: 305 SRSPERRHRSSSGSSHSGSRSSSKKK 330
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 50 KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS- 108
KES ++ D+ ++ + S S S S+ SRS S
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDED---DADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207
Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD---EKERKRRSPSPKPTKVHI 165
SS SRSSS SS SPS SR R +R RS S S+ R E+ R R S S ++ H
Sbjct: 208 SSHSRSSSRSS---SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264
Query: 166 G 166
G
Sbjct: 265 G 265
Score = 33.5 bits (75), Expect = 0.24
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
+S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
Score = 33.5 bits (75), Expect = 0.24
Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 266 SPPRMRRRSRSPRR----RSPVRRRSRSPGRRRHRSRSSSNSS 304
SP R R+RSRS R R RSRSP RRHRS S S+ S
Sbjct: 280 SPERNRKRSRSRSSSSGDRKKRRTRSRSP-ERRHRSSSGSSHS 321
Score = 31.2 bits (69), Expect = 1.2
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
Score = 29.3 bits (64), Expect = 4.5
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)
Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
RS R R RSR SPR+RS S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
+ RRSRS R S R SRS R R RSRSSS+S
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 75.1 bits (183), Expect = 7e-14
Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 3 LSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSK---DRSKDKGATKESSEKDRGR 59
L V+ K G +E+ + ++ + + SK D S+++ + K+ S + R R
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR-RSR 203
Query: 60 DKTRKRHSASSGSSST------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
K+R HS SS SS+ RSRS S SSS S + + SSS S S S+S SSS S
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH 263
Query: 114 SSSSSS-----SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPK 159
SSS SS S SP R NR+RSRS+S D K+R+ RS SP+
Sbjct: 264 RGSSSPRKRSYSSSSSSPER----NRKRSRSRSS-SSGDRKKRRTRSRSPE 309
Score = 54.3 bits (129), Expect = 1e-07
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-EKDRGR-DKTRKRHSASSGS 72
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS E+ R R K+R + GS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
Query: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
SS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 267 SSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 50 KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS- 108
KES ++ D+ ++ + S S S S+ SRS S
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDED---DADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207
Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD---EKERKRRSPSPKPTKVHI 165
SS SRSSS SS SPS SR R +R RS S S+ R E+ R R S S ++ H
Sbjct: 208 SSHSRSSSRSS---SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264
Query: 166 G 166
G
Sbjct: 265 G 265
Score = 33.5 bits (75), Expect = 0.24
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
+S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
Score = 31.2 bits (69), Expect = 1.2
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
Score = 29.3 bits (64), Expect = 4.5
Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)
Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
RS R R RSR SPR+RS S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
+ RRSRS R S R SRS R R RSRSSS+S
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 74.3 bits (181), Expect = 1e-13
Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 12/159 (7%)
Query: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
+L KE SS+ + S + S S S + E S + KR +
Sbjct: 2523 ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSP 2582
Query: 70 SGSS------------STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
+ + + R +SSS SS+S+ SSS SSSSS+SS S SSS+S SSSS
Sbjct: 2583 TPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642
Query: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSP 156
SSSS SPSP++ + S KPP + + R R P
Sbjct: 2643 SSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 2681
Score = 73.6 bits (179), Expect = 2e-13
Identities = 88/306 (28%), Positives = 122/306 (39%), Gaps = 34/306 (11%)
Query: 19 KKSSTRAPSPTKRKDRSDEK-------SKDRSKDKGATKESSEKDRGRDKTRK-RHSASS 70
++ +R+ +P +R RS + S+ R+ +G ++ S RGR +R + S
Sbjct: 665 RRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRS 724
Query: 71 GSSSTRSRSSSTSSSGS-STSTGSSSGSSSSSASSRSGSSSTSRSSSSSS-----SSGSP 124
GSSS R S TS S S S+ S SS SRS SS S++ S S S SP
Sbjct: 725 GSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSP 784
Query: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRR-----SPSPKPTKVHIGRLTRNVTKDHIME 179
P ++ RRSRS S PK + RR SP PK R + + + H
Sbjct: 785 CPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 844
Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA---LKHMDGGQIDGQEITAT 236
T + I P + +C E +PD K+ +H G + ++
Sbjct: 845 KSGTPPRQGSITSPQANEQSVTPQRRSCFE-SSPDPELKSRTPSRHSCSGSSPPRVKSS- 902
Query: 237 VVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHR 296
TP R SP R P P + PR R S S SP R SR+ RR
Sbjct: 903 ---------TPPRQSPSRSSSPQPKVKAIISPRQRSHSGS-SSPSPSRVTSRTTPRRSRS 952
Query: 297 SRSSSN 302
SN
Sbjct: 953 VSPCSN 958
Score = 72.0 bits (175), Expect = 6e-13
Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 12/124 (9%)
Query: 48 ATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG 107
A KE+ + R + T + S SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SS 2643
Query: 108 SSSTSRSSSSSSSSGSPSPS--RRRHDNRRRSRSKSKP--PKRDEK-------ERKRRSP 156
SSS+S S + P P+ ++ RRSRS KP RD + ER+R SP
Sbjct: 2644 SSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703
Query: 157 SPKP 160
P P
Sbjct: 2704 QPSP 2707
Score = 69.3 bits (168), Expect = 4e-12
Identities = 92/317 (29%), Positives = 125/317 (39%), Gaps = 59/317 (18%)
Query: 16 ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRK-----RHSASS 70
E++ T A +P ++ RS + K + +E SE D D K R + S
Sbjct: 1520 ESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRS 1579
Query: 71 GSS---STRSR-SSSTSSSGSS--------TSTGSSSGSSSSSAS-----------SRSG 107
GSS ++SR S S SGSS + + SGS SS SRSG
Sbjct: 1580 GSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSG 1639
Query: 108 SSSTSRSSS---SSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
SSS R S SSS+ SP + RR SRS +P + +RRS P
Sbjct: 1640 SSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTR 1699
Query: 165 IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMD 224
RL+R S+ + + P R P +S +P+ AEK+
Sbjct: 1700 KARLSRR------SRSASSSPETRSRTPPRHRRSPSVS---------SPEPAEKS----- 1739
Query: 225 GGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVR 284
+ + +A+ +P + T RR P P P RS R RR RR
Sbjct: 1740 --RSSRRRRSAS---SPRTKTTSRRGRSPS---PKPRGLQRSRSRSRREKTRTTRRRDRS 1791
Query: 285 RRSRSPGRRRHRSRSSS 301
S+S RRR RSRS S
Sbjct: 1792 GSSQSTSRRRQRSRSRS 1808
Score = 67.8 bits (164), Expect = 1e-11
Identities = 81/316 (25%), Positives = 126/316 (39%), Gaps = 46/316 (14%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSG 71
K+++KK R+ S +K++ K + K K ++ S K+R+ H SA S
Sbjct: 210 KKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSA 269
Query: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG----------SSSTSRSSSSSSSS 121
SSS SRS S S++ + T T + +G S S AS R G ++ST R SS +++
Sbjct: 270 SSSDTSRSRSRSAA-AKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETAT 328
Query: 122 GSPSPSRRRHDNRRRSRSKSKP---PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
PS D ++ +S ++P P+R + +P+P + H G T
Sbjct: 329 KQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQ 388
Query: 179 EIFSTYGKIKMI-DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
E + + D + L + + + K +H ++
Sbjct: 389 EPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRH-----------ASSS 437
Query: 238 VLAPWPRPTPRRFSPPRRMLPPPPMWLRS-------------PPRMRRRSRSPRRRSPVR 284
+P P P P R + P RS P R RSRSP R
Sbjct: 438 PESPKPAPAP---GSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGR 494
Query: 285 RRSRSPGRRRH-RSRS 299
RSR+P +R H RSRS
Sbjct: 495 SRSRTPTKRGHSRSRS 510
Score = 63.9 bits (154), Expect = 2e-10
Identities = 83/298 (27%), Positives = 118/298 (39%), Gaps = 36/298 (12%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGAT-----KESSEKDRGRDKTRKRHSASSG 71
+ + S +P P + K RS + + S + T + S K RG ++R R S
Sbjct: 1724 HRRSPSVSSPEPAE-KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR-SRREK 1781
Query: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
+ +TR R S SS +S S S + R GS SRS + SS R
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS-------RTS 1834
Query: 132 DNRRRSRSKSKPPKRDEKERKRRSPSP-KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
RRR RS++ P R ++ R R SP+P K ++ T ++ I + +
Sbjct: 1835 SRRRRGRSRTPPTSR-KRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTS 1893
Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
+ R S + A + + + P R R
Sbjct: 1894 PVSRRRSRSRTS----VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSR 1949
Query: 251 SPP---RRMLPPPPMWLRSPPRMRRRSRSPRRRSPV-RRRSRS----PGRRRHRSRSS 300
+PP RR R+PP RRRSRS R SP+ RRRSRS RRR RSR+S
Sbjct: 1950 TPPVTRRRSRS------RTPPVTRRRSRS--RTSPITRRRSRSRTSPVTRRRSRSRTS 1999
Score = 62.0 bits (149), Expect = 6e-10
Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 35/288 (12%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSR 78
++ +R+ +P +R+ RS ++ RS+ + + + R + R R + S +RSR
Sbjct: 580 RRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR-TRSPVRRRSRSR 638
Query: 79 SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR---RHDNRR 135
S + S S + T + G S S +R G S + + S S S +P+RR R R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPR 698
Query: 136 RSRSKSKPPKRDEKERKRRSPSPKP-TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 194
R RS+S+ R+ RS S P + G + K + S +M
Sbjct: 699 RGRSRSR-----SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSP--EMKK 751
Query: 195 ERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR 254
R+ S+ + + ++ +L+ G P P + +PPR
Sbjct: 752 SRISSRRSRSLSSP--RSKAKSRLSLRRSLSGSS--------------PCPKQKSQTPPR 795
Query: 255 RM---LPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS 299
R P R+PPR R S SP P +++S++P R+ H S S
Sbjct: 796 RSRSGSSQPKAKSRTPPRRSRSSSSP----PPKQKSKTPSRQSHSSSS 839
Score = 61.2 bits (147), Expect = 1e-09
Identities = 84/321 (26%), Positives = 125/321 (38%), Gaps = 44/321 (13%)
Query: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSG---SSSTRSRSS 80
R+ S ++R+ + +DRS +T ++ R R + +R SG S R SS
Sbjct: 1772 RSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS 1831
Query: 81 STSSS---GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS---SSSGSPSPSRRRHDNR 134
TSS G S + +S S S S S SR+S ++ S S +P SRRR +R
Sbjct: 1832 RTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
Query: 135 ------RRSRSKSKPPKRDEKER-----------------KRRSPSPKPTKVHIGR---- 167
RRSRS++ +R + R +RRS S PT R
Sbjct: 1892 TSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1951
Query: 168 -LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGG 226
+TR ++ + T + + P+ R S+ + +
Sbjct: 1952 PVTRRRSRSRTPPV--TRRRSRSRTSPITRRRSR-SRTSPVTRRRSRSRTSPVTRRRSRS 2008
Query: 227 QIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRS--PRRRSPVR 284
+ +T + P RR +LP RSP +RRRSRS PR R
Sbjct: 2009 RTS--PVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKR 2066
Query: 285 RRSRSPGRRRHRSRSSSNSSQ 305
+RSP R RS S S+S +
Sbjct: 2067 SLTRSPPAIRRRSASGSSSDR 2087
Score = 58.9 bits (141), Expect = 5e-09
Identities = 69/252 (27%), Positives = 93/252 (36%), Gaps = 56/252 (22%)
Query: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
AS+G+ + ++ + +S+ SSS SSSSS+SS S SSS+S SSSS S GS P
Sbjct: 2511 ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPV 2570
Query: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKI 187
+ R S P E R+ R P P P K R R+ + S+
Sbjct: 2571 Q---PEVALKRVPSPTPAPKEAVREGRPPEPTPAK----RKRRSSSSSSSSSSSSSSSSS 2623
Query: 188 KMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTP 247
S + +P A+ P P+ P
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAK-----------------------PGPQALP 2660
Query: 248 RRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRR------------RSPVRRR--SRSPGRR 293
+ SP + PP RRSRSPR+ SPV RR S P R
Sbjct: 2661 KPASP------------KKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPR 2708
Query: 294 RHRSRSSSNSSQ 305
+S SS S+
Sbjct: 2709 DQQSSSSERGSR 2720
Score = 57.8 bits (138), Expect = 1e-08
Identities = 77/296 (26%), Positives = 107/296 (36%), Gaps = 67/296 (22%)
Query: 27 SPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSG 86
SPT+ DRS KS ++ +++ S + +R S+ + S S
Sbjct: 398 SPTR--DRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISS 455
Query: 87 SSTSTGSSSG-----SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRR-----R 136
S TS S G S S SR S S +++ S S +P++R H R R
Sbjct: 456 SPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRR 515
Query: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196
SRS + + +R+ RS SP+
Sbjct: 516 SRSAQRWGRSRSPQRRGRSRSPQ------------------------------------- 538
Query: 197 MHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRM 256
P S+ A + H G+ + T P R R +P RR
Sbjct: 539 -RPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRT----PARRGRSRSRTPARRR 593
Query: 257 LPPPPMWLRSPPRMRRRSRSP------RRRSPVRRRS--RSPGRRRHRSRSSSNSS 304
R+P R R RSR+P R R+P RRRS RSP RRR RSRS + S
Sbjct: 594 SRS-----RTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644
Score = 57.8 bits (138), Expect = 1e-08
Identities = 91/327 (27%), Positives = 124/327 (37%), Gaps = 76/327 (23%)
Query: 15 KENNKKSSTRAPSPTK--RKDRSDEKSKDRSKDKGATKE------SSEKDRGRDKTRKRH 66
+ ++ +SS +P PTK R S +S + G+ +E S + GR K K H
Sbjct: 414 QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH 473
Query: 67 SASSGSSSTRSRSSSTSSSGSS-----TSTGSSSGSSSSSASSRS----GSSSTSRSSSS 117
S + RSRS +T+ G S T G S S SRS G S + +
Sbjct: 474 SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Query: 118 SSSSGSPSPSRRRHDNRR------------------RSRSKSKPPKRDEKER-----KRR 154
S S P SR R+ RR R RS+S+ P R + R +RR
Sbjct: 534 SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 593
Query: 155 SPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPD 214
S S PT+ R +R+ T P R S+ A
Sbjct: 594 SRSRTPTR----RRSRSRT-------------------PARRGRSR-SRTPARRRSRTRS 629
Query: 215 EAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM--RR 272
+ + + G+ + T P R R +P RR R+P R R
Sbjct: 630 PVRRRSRSRSPARRSGRSRSRT----PARRGRSRSRTPARRGRSRS----RTPARRSGRS 681
Query: 273 RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
RSR+P RR R RSR+P R R RSRS
Sbjct: 682 RSRTPARRG--RSRSRTPRRGRSRSRS 706
Score = 57.0 bits (136), Expect = 2e-08
Identities = 80/307 (26%), Positives = 122/307 (39%), Gaps = 26/307 (8%)
Query: 4 SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG---RD 60
S +++S + R+PSP K R ++S+ RS+ + T+ + +DR +
Sbjct: 1741 SSRRRRSASSPRTKTTSRRGRSPSP---KPRGLQRSRSRSR-REKTRTTRRRDRSGSSQS 1796
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
+R+R + S S TR R + S + SS +SS RS + TSR S S +
Sbjct: 1797 TSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRT 1856
Query: 121 SGSPSP-----SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKD 175
S P+P SR RRSRS++ P + R R SP + +TR ++
Sbjct: 1857 S--PAPWKRSRSRASPATHRRSRSRT-PLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913
Query: 176 HIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITA 235
+ + + + R P + + + +
Sbjct: 1914 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973
Query: 236 TVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGR 292
T + R + R SP R R+ P RRRSRS R SPV R RSR+P
Sbjct: 1974 TSPIT--RRRSRSRTSPVTRRRSRS----RTSPVTRRRSRS--RTSPVTRRRSRSRTPPA 2025
Query: 293 RRHRSRS 299
R RSRS
Sbjct: 2026 IRRRSRS 2032
Score = 56.2 bits (134), Expect = 3e-08
Identities = 80/294 (27%), Positives = 114/294 (38%), Gaps = 26/294 (8%)
Query: 20 KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH----SASSGSSST 75
K+ +R P P +R RS + +++ ++ +S R +T RH S SS +
Sbjct: 1679 KTKSRTP-PRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAE 1737
Query: 76 RSRSSSTSSSGSS--TSTGSSSGSSSSS-------ASSRSGSSSTSRSSSSSSSSGSPSP 126
+SRSS S SS T T S G S S + SRS T + S S S
Sbjct: 1738 KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQST 1797
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGK 186
SRRR R RSRS+ +R RSP+ + + R R + +
Sbjct: 1798 SRRRQ--RSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRG--RSRTPPTSRKRSR 1853
Query: 187 IKMIDMPVERMHPHLSKG-YACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRP 245
+ P +R S + P + + + + + T V R
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTR---RR 1910
Query: 246 TPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS 299
+ R SP R R+PP RRRSRS + R RSR+P R RSRS
Sbjct: 1911 SRSRASPVSRRRSRS----RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS 1960
Score = 54.7 bits (130), Expect = 1e-07
Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 35/171 (20%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
KE ++ P+P KRK RS S S ++ SS S+SS SSS
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSS 2637
Query: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS------SSSSSSSGSPSPSR 128
+ S SSS+SSS S G + +S SRS S S S S SP
Sbjct: 2638 SSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697
Query: 129 RR-----------------HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
RR +RR R S+ P +R+R +PSP+P +
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSH---KRRRETPSPRPMR 2745
Score = 49.7 bits (117), Expect = 3e-06
Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 3/142 (2%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGR--DKTRKRHSASSGSSSTR 76
+++ AP P K E S RS K+ +KDRGR + + R S +
Sbjct: 158 REAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKK 217
Query: 77 SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
RS S S S S S R S ST+ + S + S S + R
Sbjct: 218 HRSESESKKRKHRSPTPKS-KRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276
Query: 137 SRSKSKPPKRDEKERKRRSPSP 158
SRS+S K RSPSP
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSP 298
Score = 49.7 bits (117), Expect = 3e-06
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK-TRKR 65
+++S ++S +RA ++R+ RS R + + T + + R R +R
Sbjct: 1897 RRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956
Query: 66 HSASSGSSSTRSRSSSTSS--------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
S S TR RS S +S S +S T S S +S + R S TS +
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 2016
Query: 118 SSSSGSPSPSRRRHDNRR----RSRSKSKPPKRDEKERKRRSP 156
S S +P RRR +R R RS+S+ P + + R+P
Sbjct: 2017 RSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTP 2059
Score = 45.8 bits (107), Expect = 5e-05
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 18 NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKE-SSEKDRGRDKTRKRHSASSGSSSTR 76
+++ S S T+R+ RS R + + T + + R R T +R S S TR
Sbjct: 1896 SRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTR 1955
Query: 77 SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
RS S + + + S + + S S T R S S +S + SR R R
Sbjct: 1956 RRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTR 2015
Query: 137 SRSKSKPPKRDEKERKRRSP 156
RS+S+ P + + R+P
Sbjct: 2016 RRSRSRTPPAIRRRSRSRTP 2035
Score = 45.1 bits (105), Expect = 8e-05
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 27/164 (16%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
+ +K+ +R R + S E K R + + SS + + + + R S S S +
Sbjct: 728 SERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPK 787
Query: 77 SRSSST---SSSGSSTSTGSSS-----GSSSSSASSRSGSSSTSRSSSSSSS------SG 122
+S + S SGSS S SSSS + S + SR S SSSS SG
Sbjct: 788 QKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSG 847
Query: 123 SP-------SPSRRRHD--NRRRSRSKSKPPKRDEKERKRRSPS 157
+P SP +RRS +S P + E K R+PS
Sbjct: 848 TPPRQGSITSPQANEQSVTPQRRSCFESSP----DPELKSRTPS 887
Score = 43.1 bits (100), Expect = 3e-04
Identities = 64/268 (23%), Positives = 88/268 (32%), Gaps = 42/268 (15%)
Query: 64 KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
K +S SSS+RS + G S SSS + S S S S
Sbjct: 169 KPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESK--- 225
Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS--PSPKPTKVHIGRLTRNVTKDHIMEIF 181
+R+H R KSK +D+K ++ RS P+PK + H + +
Sbjct: 226 ----KRKH---RSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSR 278
Query: 182 STYGKIKMIDMPVERMHPHLSKGY-----------ACVEFENPDEAEKALKH----MDGG 226
S K + P + G + P E A K +
Sbjct: 279 SRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDK 338
Query: 227 QIDGQEITATVVLAPWPRPTPRRFSP-PRRMLPPP---------PMWLRSPPRMRRRSRS 276
D +E +AT P P+P R S P P P P L + P +
Sbjct: 339 DKDKKEKSAT-----RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNP 393
Query: 277 PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
P SP R RS + SSS SS
Sbjct: 394 PSEASPTRDRSPPKSPEKLPQSSSSESS 421
Score = 41.2 bits (95), Expect = 0.001
Identities = 81/339 (23%), Positives = 118/339 (34%), Gaps = 73/339 (21%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTRKRHSASSGSSST 75
K+ STR+ + S E S D + G + S D +T R +SS SS
Sbjct: 1372 KEQSTRSSGHS-----SSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPE 1426
Query: 76 RSRS---SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG------SPSP 126
+ + S S +S G GS + S S SGSS + + S G SP P
Sbjct: 1427 MKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEP 1486
Query: 127 SRRRHDNRRRSRSKSKP--------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHI- 177
R RSRS S P P+R+ + + +G+ +R+ + +
Sbjct: 1487 KALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELD 1546
Query: 178 --------------------------MEIFSTYGKIKMIDMPVERMHPHLSKGYACVEF- 210
+ S G +D R+ P S+ + E
Sbjct: 1547 VKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSK-SRLSPRRSRSGSSPEVK 1605
Query: 211 ENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPR--RFSPPRRMLPPPPMWLRS-- 266
+ P A +A D ++ AP PR PR R + P P S
Sbjct: 1606 DKPRAAPRAQSGSD---------SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 1656
Query: 267 -----PPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
PP+ R R R + +SR+P RRR SRSS
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRR-SSRSS 1694
Score = 37.4 bits (85), Expect = 0.017
Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 29/271 (10%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT-----RKRHSASSGSS 73
++S +R T+R+ RS R + + T + + R R +T R+ S +
Sbjct: 1980 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTPPAIRRRSRSRTPLLP 2038
Query: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS---PSRRR 130
RSRS S + + + + + + +RS + RS+S SSS S S P+ R
Sbjct: 2039 RKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRN 2098
Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
H R + R SP+P G L + M + G M+
Sbjct: 2099 HSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGG-SMM 2157
Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
D P R+ H EN ++ AL +TA + P P+
Sbjct: 2158 DGPGPRIPDHQRTSVP----ENHAQSRIAL-----------ALTAISLGTARPPPSMSAA 2202
Query: 251 SPPRRM----LPPPPMWLRSPPRMRRRSRSP 277
RM P P M LR+ P SR P
Sbjct: 2203 GLAARMSQVPAPVPLMSLRTAPAANLASRIP 2233
Score = 36.2 bits (82), Expect = 0.037
Identities = 49/190 (25%), Positives = 70/190 (36%), Gaps = 34/190 (17%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATK------ESSEKDRGRD 60
K+KS ++++ SS + R + ++ ++ T ESS +
Sbjct: 824 KQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKS 883
Query: 61 KTRKRHSASSGS-----SSTRSRSSSTSSSGS--------STSTGSSSGSSSSSASSRSG 107
+T RHS S S SST R S + SS S S SGSSS S S +
Sbjct: 884 RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTS 943
Query: 108 SSSTSRSSS---------------SSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERK 152
++ RS S S S S SP + R+S S S P K +
Sbjct: 944 RTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQT 1003
Query: 153 RRSPSPKPTK 162
PS +K
Sbjct: 1004 PPGPSLSGSK 1013
Score = 35.0 bits (79), Expect = 0.083
Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
G + E E G + S +RSS SSS S +G SS+ + S
Sbjct: 1346 GFSSEVKEDLNGPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVEKAGMSSNQSISSP 1405
Query: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNR---RRSRSKSKPPKRD 147
+ R+ S SS + SP + R RRSRS S P RD
Sbjct: 1406 VLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRD 1449
Score = 33.9 bits (76), Expect = 0.18
Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 11/140 (7%)
Query: 23 TRAPSPTKRKDRSDEKSKDRSKDKGATKESSE---KDRGRDKTRKR-HSASSGSSSTRSR 78
+R PS S + K + + + SS K + R+R HS SS S +R
Sbjct: 883 SRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVT 942
Query: 79 SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS-------SSSSSSSGSPSPSRRRH 131
S +T S S S+ S S SGSSS S S S SP P +
Sbjct: 943 SRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQ 1002
Query: 132 DNRRRSRSKSKPPKRDEKER 151
S S SK P EK +
Sbjct: 1003 TPPGPSLSGSKSPCPQEKSK 1022
Score = 30.4 bits (67), Expect = 2.0
Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 19/134 (14%)
Query: 44 KDKGATKESSEKDRGRDKTRKRHSASSGSSST--------RSRSSSTSSSGSSTST-GSS 94
K + T D + R+ HS S S RSRSSS + +S S
Sbjct: 1058 KGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQD 1117
Query: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK-----PPKRD-- 147
G S+S +SG S S SSS S R ++SK PP+ D
Sbjct: 1118 RGEFSASPMLKSGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDAT 1177
Query: 148 ---EKERKRRSPSP 158
+++ + SP P
Sbjct: 1178 ASPPRQKDKFSPFP 1191
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 101 SASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERK----RRSP 156
S S GSS + + + +P P + R S S+S PK+ +K++K RRS
Sbjct: 142 SDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSE 201
Query: 157 SPKPTK 162
S P +
Sbjct: 202 SSSPRR 207
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 73.9 bits (180), Expect = 2e-13
Identities = 47/103 (45%), Positives = 62/103 (60%)
Query: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
SS+ + S + + E+ D++ D G + S+SS SSS+ S SS
Sbjct: 2568 SSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSS 2627
Query: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
S+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 73.2 bits (178), Expect = 3e-13
Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 13 GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSK---DKGATKESSEKDRGRDKTRKRHSAS 69
G +E+ SS+ + S + S S+ + DK R R ++
Sbjct: 2553 GAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612
Query: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
+ SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 130 RHDNRRRSRSKSKPP 144
++ S P
Sbjct: 2673 TDEDSSCSSDDEAAP 2687
Score = 67.4 bits (163), Expect = 2e-11
Identities = 49/136 (36%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 18 NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRS 77
N KS +A + + S+ S S ++ SS + + G T
Sbjct: 2540 NPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGG 2599
Query: 78 RSSSTSSS-----GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
R+ S +SS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Query: 133 NRRRSRSKSKPPKRDE 148
+ S S S DE
Sbjct: 2660 SSSSSSSSSSSSTTDE 2675
Score = 62.8 bits (151), Expect = 4e-10
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
N +S+RA SP S S S ++ SS +SS SSS+
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSSSSSS 2646
Query: 77 SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
S SSS+SSS SS+S+ SSS SSSSS + S S+ ++ + ++G PS +
Sbjct: 2647 SSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG-PSAQAALPTKATK 2705
Query: 137 SRSKSKP----PKRDEKERKRRSPSPKPTK 162
K++P P + + ++P P+PT+
Sbjct: 2706 QAGKARPSAHSPGKKTPAPQPQAPPPQPTQ 2735
Score = 60.5 bits (145), Expect = 2e-09
Identities = 55/160 (34%), Positives = 69/160 (43%), Gaps = 43/160 (26%)
Query: 40 KDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS--------------- 84
+D K K +E+D G +++ S+SSGSSS SSS+SS
Sbjct: 2536 EDSGNPKSPDKAQAEQD-GAEESESSSSSSSGSSS----SSSSSSSSGSETEGEEEGDKN 2590
Query: 85 -----------------------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
S SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2650
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
S S S + S S S D +P PT
Sbjct: 2651 SSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPT 2690
Score = 35.0 bits (79), Expect = 0.083
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
G T S + S + + + S SS+SS SGSSS SSSSSSSSGS +
Sbjct: 2530 GPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSS---SSSSSSSSGSETEGEEE 2586
Query: 131 HD 132
D
Sbjct: 2587 GD 2588
Score = 34.3 bits (77), Expect = 0.14
Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 36/198 (18%)
Query: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
S + S + G SSG+ + +SSR G + + G P P + D R R
Sbjct: 178 SHAPSARTPGGGHSSGAPAKGSSSRDGPAK-----ERAGRGGEPPPLFGKKDPRARGEEA 232
Query: 141 SKP-------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME---IFSTYGKIKMI 190
S P + + R+ R P P+ + L + TK+ ++ + G +
Sbjct: 233 SGPRGVVDLTQEARAEGRQDRGP-PRLAERLSPFLAESKTKNAALQPSVLTMCNGGAGDV 291
Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
+P A V A++A + +G ++ + T L P PRP P
Sbjct: 292 GLP------------ALVAEAGRGGAKEAARQDEGARL----LRRTETLLPGPRPCPSPL 335
Query: 251 SPPRRMLPPPPMWLRSPP 268
PP P PP +PP
Sbjct: 336 PPP----PAPPKGPPAPP 349
Score = 32.3 bits (72), Expect = 0.54
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 36/151 (23%)
Query: 43 SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
S+ K ++++ D ++ SG+ + ++ + + + SSS S SSS+
Sbjct: 2511 SEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSS 2570
Query: 103 SSRSGSS------------------------------------STSRSSSSSSSSGSPSP 126
SS S SS S+S SSSSSSSS S S
Sbjct: 2571 SSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSS 2630
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
S + S S S S S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2661
Score = 31.6 bits (70), Expect = 0.91
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 248 RRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
RR S RR P + R P R R+R+ +P SP R+R +S
Sbjct: 1507 RRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKS 1548
Score = 29.3 bits (64), Expect = 4.5
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 30 KRKDRSDEKSKDR--SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
K K R K + R S+D+ S RG + RKR A S S R R S SSG
Sbjct: 1495 KEKQRELVKLQRRRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKSGHSSGK 1554
Query: 88 STS 90
+S
Sbjct: 1555 LSS 1557
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 72.4 bits (176), Expect = 5e-13
Identities = 96/356 (26%), Positives = 127/356 (35%), Gaps = 92/356 (25%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKD----------RSKDKGATKESSEKDRGRDKTRK 64
K+ +K TR S ++ K RS +S+ RS+ + + R R R+
Sbjct: 266 KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRR 325
Query: 65 RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS---- 120
R R R S + S+ S SGSSSSS+SSRS S +SS
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385
Query: 121 ---SGSPSPSRRRH--------------------DNRRRSRSKSKPPKRDE--------- 148
S S SP RRRH NR R S P R
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT 445
Query: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE----RMHPHLSKG 204
++R+ SP+PKP KV + + GK+ D + R S
Sbjct: 446 EKRESPSPAPKPRKVELSESEED-----------KGGKMAAADSVQQRRQYRRQNQQSSS 494
Query: 205 YACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA--------------------PWPR 244
+ + DE K H+ G++ + + A P P
Sbjct: 495 DSGSSSSSEDERPKR-SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP 553
Query: 245 PTPRRFS-----PPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRH 295
PT RR S PPRR P P PPR R S PRRRSP RR P +RR+
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTP-----PPRRRTPSPPPRRRSPSPRRYSPPIQRRY 604
Score = 65.1 bits (157), Expect = 7e-11
Identities = 80/289 (27%), Positives = 105/289 (36%), Gaps = 56/289 (19%)
Query: 28 PTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
P+ + E+ K R ++ ++D +DK K SS RSRS S
Sbjct: 120 PSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKS-- 177
Query: 88 STSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
S S SS R S SRS + S SPSP+ + K K P+
Sbjct: 178 ----RSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEK---------KEKTPELP 224
Query: 148 EKERKRRSPS-------------PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 194
E K + PS PKP + K+ E S K K P
Sbjct: 225 EPSVKVKEPSVQEATSTSDILKVPKPEPI-------PEPKEPSPEKNSKKEKEKEKTRPR 277
Query: 195 ERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR 254
R SK + +P +H + + + +P RP+PRR +PPR
Sbjct: 278 SRSR---SKSRSRTRSRSPSHTRPRRRH----RSRSRSYSPRRRPSPRRRPSPRRRTPPR 330
Query: 255 RMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
RM PPP R R RSPVRRR RS S SSS+S
Sbjct: 331 RMPPPP--------------RHRRSRSPVRRRRRSSASLSGSSSSSSSS 365
Score = 56.6 bits (135), Expect = 3e-08
Identities = 81/319 (25%), Positives = 119/319 (37%), Gaps = 64/319 (20%)
Query: 8 KKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-------DRGRD 60
+K L E +K A +++ + +++ S D G++ S ++ G
Sbjct: 458 RKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEV 517
Query: 61 KTRKRHSAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
R+RHS S S S S R R TS G + S + + S + R+ +
Sbjct: 518 GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPP 577
Query: 120 SSGSPSPS--RRRHDNRR------RSRSKSKPPKR-----DEKERKRRSPSPKPTKVHIG 166
+PSP RR RR R S S PPKR ++R SPSP P +
Sbjct: 578 RRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR---- 633
Query: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYACVEFENPDEAEKALKHMDG 225
R++ + K PV +R P LS KH G
Sbjct: 634 RVSHSPPP-------------KQRSSPVTKRRSPSLSS-----------------KHRKG 663
Query: 226 GQIDGQEITATVVLAPWPR----PTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRS 281
A +P P P+PR +P PPP S RR+S SP R
Sbjct: 664 SSPSRSTREAR---SPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTR- 719
Query: 282 PVRRRSRSPGRRRHRSRSS 300
P+RR SR+P ++ + +S
Sbjct: 720 PIRRVSRTPEPKKIKKAAS 738
Score = 50.1 bits (118), Expect = 2e-06
Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 32/309 (10%)
Query: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD----K 61
++++ L +K+ ++ R K + S + ++RS+ K S R R +
Sbjct: 136 IEQEKLASMKKQDEDKDKR----DKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRR 191
Query: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
RKR + S T+SRS S + + S S ++STS
Sbjct: 192 ERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPE 251
Query: 122 GSP---SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
P PS ++ + + + K++P R + + R+ S P+ R R+ ++ +
Sbjct: 252 PIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSP 311
Query: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA-----LKHMDGGQIDGQEI 233
P R P + P ++ + + G
Sbjct: 312 R-----------RRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS 360
Query: 234 TATV--VLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPG 291
+++ +P +P R SPPR+ P SPPR R R P P R S +P
Sbjct: 361 SSSSSRSRSPPKKPPKRTSSPPRKTRRLSPS--ASPPRRRHRPSPPATPPPKTRHSPTP- 417
Query: 292 RRRHRSRSS 300
++ +R+R S
Sbjct: 418 QQSNRTRKS 426
Score = 47.8 bits (112), Expect = 1e-05
Identities = 84/330 (25%), Positives = 114/330 (34%), Gaps = 49/330 (14%)
Query: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
SL G ++ S +R+P K S K R A S + R R
Sbjct: 354 SLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA---SPPRRRHRPSPPATPPPK 410
Query: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSG------------SSSSSASSRSGSSSTSRSSSS 117
+ S T +S+ T S S S G +SG S S + R S S
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 470
Query: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHI 177
+ + S +RR R+ +S S E +R PK + V G + R
Sbjct: 471 GKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDER----PKRSHVKNGEVGRRRRHSPS 526
Query: 178 MEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
+ K + P R S +P A + + +
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPP-PTRRRRSPSPAPPPRRRRTPTPPPRRRTPS-- 583
Query: 238 VLAPWPR---PTPRRFSPP-------------RRMLPPPPMWLR---SPPRMRRRSRSP- 277
P PR P+PRR+SPP R PPPP R SPP RR S SP
Sbjct: 584 ---PPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640
Query: 278 --RRRSPVRRRSRSPG-RRRHRSRSSSNSS 304
+R SPV + RSP +HR SS + S
Sbjct: 641 PKQRSSPVT-KRRSPSLSSKHRKGSSPSRS 669
Score = 45.4 bits (106), Expect = 6e-05
Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 45/184 (24%)
Query: 19 KKSSTRAPSPTKR-------KDRSDEKSKDRSKD------KGATKESSEKDRGRDKTRKR 65
K+ ++ +P P +R K RS +K RS KG++ S ++ + KR
Sbjct: 622 KRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKR 681
Query: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS------------------- 106
HS S R R+ TSSS G+SS + S S
Sbjct: 682 HSPSP-----RPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKA 736
Query: 107 ---GSSSTSRSSSSSSSSGSPSPSRRR-----HDNRRRSRSKSKPPKRDEKERKRRSPSP 158
S R SSS S SGSP P+ ++ + +S S + P K+ K +PSP
Sbjct: 737 ASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSP 796
Query: 159 KPTK 162
P +
Sbjct: 797 SPPR 800
Score = 44.7 bits (104), Expect = 1e-04
Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 11/216 (5%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
++ +P P +R S + R +T+ R + + + +AS S R SSS
Sbjct: 693 TSSSPPPVRRGASSSPQR--RQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSS 750
Query: 82 TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS---SSSSSSSGSPSPSR---RRHDNRR 135
S SGS + S S+S S++ S + + S + SPSP R + ++
Sbjct: 751 RSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKK 810
Query: 136 RSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE 195
+ + K K K+D+K +K + K K VT I +T + + + P
Sbjct: 811 KKKKKDKKHKKDKKHKKHK--KHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEP 868
Query: 196 RMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQ 231
+ S+ ++ EKAL+ M Q+ Q
Sbjct: 869 KKETE-SEAEDNLDDLEKHLREKALRSMRKAQVSPQ 903
Score = 41.6 bits (96), Expect = 9e-04
Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSE---KDRGRDKTRKRHSASSGSSST 75
K+ + P P KR+ K R K+ S K R + K SS S ST
Sbjct: 611 KRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRST 670
Query: 76 R-SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
R +RS + S + + +SSS R G +SSS SPSPS R
Sbjct: 671 REARSPQPNKRHSPSPRPRAPQTSSSPPPVRRG------ASSSPQRRQSPSPSTR----P 720
Query: 135 RRSRSKSKPPKRDEKERKRRSPSPKPTK 162
R S++ PK K +K SPSP+ +
Sbjct: 721 IRRVSRTPEPK---KIKKAASPSPQSVR 745
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 19 KKSSTRAPSPTKRKDRSDE---KSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSST 75
KK+ + PSP+ ++ E K K + KDK K+ K + K K +A++ ++ T
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVT 846
Query: 76 RSRSSSTSSS 85
+ ++ +++
Sbjct: 847 PAAIAAATTT 856
>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
Length = 164
Score = 70.5 bits (171), Expect = 2e-12
Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
R P KV++G L N K + F YG ++ + V R P G+A VEFE+P
Sbjct: 3 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56
Query: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
+A A++ +DG + G + V L+ + + R PPP W R P RR
Sbjct: 57 RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106
Query: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
RS PRRRSP RR RSRS R R R RS S
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140
Score = 30.4 bits (67), Expect = 2.0
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR---HSASSGSSSTRSRSS 80
R+P P +R R S+ RS+ S +DR R+++ R H S S +RSRS
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159
Query: 81 S 81
S
Sbjct: 160 S 160
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 70.5 bits (171), Expect = 2e-12
Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 52/289 (17%)
Query: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
S+ + + R+ S S + T +R S S SGS + + S S S S S RS S S S
Sbjct: 2 SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRS-RSKSRSRS 60
Query: 113 RSSSSSSSSGSPSPS---RRRHDNR------RRSRSKSKPPKRDEKERKRRSPSPKP-TK 162
R S + S S S RRR +R RR RS+S P + + +P P T
Sbjct: 61 RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC 120
Query: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKH 222
+ + L+ T+ + E+FS YG + +++ V S+G+A V FE D++++A++
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMER 179
Query: 223 MDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------ 270
+G ++DG+ I + R P P +++ P
Sbjct: 180 ANGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227
Query: 271 ----RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
RRR R RRRS SP R+RSRS S S
Sbjct: 228 GGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
R R S S RRRS R RS +P RR RSRS S S
Sbjct: 70 RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/85 (25%), Positives = 28/85 (32%)
Query: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
T++ H+ + G R S G G G S R R
Sbjct: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
SPS R RSRS+S P+R
Sbjct: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 69.3 bits (168), Expect = 4e-12
Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 58 GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
G D R H++SS SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S SS++
Sbjct: 139 GGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHK 198
Query: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRD-EKERKRRSPSPKPTK 162
PS+ + R +S K P RD K K S PK K
Sbjct: 199 LMKEHKEKPSK----DSREHKSAFKEPSRDHNKSSKESSKKPKENK 240
Score = 57.0 bits (136), Expect = 2e-08
Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 64 KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
+R +G RS +S+SSS SSS SSSSS+SS S SSS+S SSSSSSSS S
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
S S ++ K K + R+ +S +P++ H
Sbjct: 185 SSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDH 225
Score = 52.8 bits (125), Expect = 4e-07
Identities = 42/129 (32%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 44 KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103
K G S + S+SS SSS+ S SSS+SSS SS+S+ SSS S+S S
Sbjct: 137 KAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196
Query: 104 SRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP------------PKRDEKER 151
+ + S S S R N+ S KP PK KE
Sbjct: 197 HKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKPLKEEKIVPKMAFKEP 256
Query: 152 KRRSPSPKP 160
K S PKP
Sbjct: 257 KPMSKEPKP 265
Score = 40.8 bits (94), Expect = 0.002
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 99 SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
+SS+SS S SSS+S SSSSSSSS S S S + S S S + K K P
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKP 207
Query: 159 KPTKVHIGRLTRNVTKDH 176
+ ++DH
Sbjct: 208 SKDSREHKSAFKEPSRDH 225
Score = 40.0 bits (92), Expect = 0.003
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 17/140 (12%)
Query: 27 SPTKRKDRSDEKSKDRSKDKGATKE----------------SSEKDRGRDKTRKRHSASS 70
+P+KR SD + K K ++ E S++K + +DK+ +
Sbjct: 280 APSKRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVK 339
Query: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
S T + ST + S + SS+S S S +SSSSSSS S +PS+ R
Sbjct: 340 IESETSEKKKSTLPPFDDIVDPNDS-DVEENISSKSDSEQPSPASSSSSSSSSFTPSQTR 398
Query: 131 HDNRRRSRSKSKPPKRDEKE 150
RS K +E+E
Sbjct: 399 QQGPLRSIMKDLHSDDNEEE 418
Score = 29.6 bits (65), Expect = 3.5
Identities = 39/159 (24%), Positives = 53/159 (33%), Gaps = 5/159 (3%)
Query: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRD 60
+LS K+K E KS + AP ++ KD+S K G K SE +
Sbjct: 292 ELSAKKRKK--SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKK 349
Query: 61 KTRKRHS--ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
T S SS S S + SSS SSSS S++ RS
Sbjct: 350 STLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKD 409
Query: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
S ++ +P R +R S S
Sbjct: 410 LHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLS 448
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 67.8 bits (164), Expect = 1e-11
Identities = 85/326 (26%), Positives = 126/326 (38%), Gaps = 71/326 (21%)
Query: 14 VKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-----DRGRDKTRK---- 64
VK N+ +STR+ + + RS +S+ S+ + ++ S R R +TRK
Sbjct: 266 VKSYNQ-ASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILS 324
Query: 65 ---RHSASSGSSSTRSRSSS-TSSSGSSTSTGSSSGSSSSSASSRSGS-------SSTSR 113
RHS S S +S++ S T G S + + S + SRS S SS+ R
Sbjct: 325 QMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPR 384
Query: 114 SSSSSSSSGSPSP----SRRRHDNRRRSRSKSKPPKRDEKERKRRSP----------SPK 159
S S SGSP+ SR R N+ R RS+S+ P + + RSP SP
Sbjct: 385 KESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPY 444
Query: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA 219
+ + N +DH S+ + + + +
Sbjct: 445 KARDRSRSRSPNKARDH-------------------------SRSRSPNKARDRSRSRSP 479
Query: 220 LKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
K D Q+ +P RR P + S R RRSRSP +
Sbjct: 480 SKERDHSQLG----------SPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSK 529
Query: 280 RSPVRRRSRSPGRRRHRSRSSSNSSQ 305
RR+SRSP + R RS+S S S +
Sbjct: 530 ERQ-RRQSRSPNKERDRSQSRSPSEE 554
Score = 67.8 bits (164), Expect = 1e-11
Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 39/291 (13%)
Query: 17 NNKKSSTRAPSPTKRKDRS----DEKSKDRSKDKGATKESSEKDRGRDKTRKR---HSAS 69
N + +R+ SP K +DRS K++D S+ + K + ++ R R + R S S
Sbjct: 408 NKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYK-ARDRSRSRSPNKARDHSRSRS 466
Query: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS------SGS 123
+ RSRS S S + GS S S R S SSS S S
Sbjct: 467 PNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRS 526
Query: 124 PSPSRRRHD----NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
PS R+R N+ R RS+S+ P + + R+ RSPS + + R R+ +K+ E
Sbjct: 527 PSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDR----RRWRSPSKER--E 580
Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVL 239
+ + D R P+ GY+ + ++A + Q
Sbjct: 581 RRQSRSSSEERDHSRSR-SPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQS------- 632
Query: 240 APWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSP 290
R + + P + +P P W RSP R S++ R+P + S SP
Sbjct: 633 ----RTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQN---RTPSKTSSHSP 676
Score = 64.7 bits (156), Expect = 1e-10
Identities = 87/316 (27%), Positives = 128/316 (40%), Gaps = 31/316 (9%)
Query: 4 SGVKKKSLLGVKENN-KKSSTRAPSPTKRKDRSD--EKSKDRSKDKGATKESSEKDRGRD 60
SG +K++ V+ ++ K++ +RA S T++ S S+ RS KG ++ S R
Sbjct: 292 SGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPR--- 348
Query: 61 KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
+ H+ S S RS S S SSS GSSS S S+SGS + R S S S
Sbjct: 349 -RGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSS-PRKESGRSQSGSPNKQRDHSRSRS 406
Query: 121 -------SGSPSPSRRRHDNRRRSRSKSKPPKRDE---KERKR-RSPSPKPTKVHIGRLT 169
S S SP + R +R RS +K++ R K R R RS SP + H +
Sbjct: 407 PNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRS 466
Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQID 229
N +D + + ER H L + K + +
Sbjct: 467 PNKARD----------RSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKE-RQCRQSRSS 515
Query: 230 GQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
+E +P R+ P + S R R+SRSP + RRR RS
Sbjct: 516 SKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERD-RRRWRS 574
Query: 290 PGRRRHRSRSSSNSSQ 305
P + R R +S S+S +
Sbjct: 575 PSKERERRQSRSSSEE 590
Score = 59.7 bits (143), Expect = 3e-09
Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 32/295 (10%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG---ATKESSEKD-RGRDKTRKRHSASSGS 72
++ K ++ S T R+ RS S++ SK++ + S E+D RG RK S
Sbjct: 334 SHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSG 393
Query: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSSSS-GSPSPSRRR 130
S + R S S S + S S S + SRS S + +R S S S + SR R
Sbjct: 394 SPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSR 453
Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
N+ R S+S+ P + + RSPS + +G ++ +DH +
Sbjct: 454 SPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKE--RDH-----------RRS 500
Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
P + S+ + + + + +E + +P R+
Sbjct: 501 RSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQS 560
Query: 251 SPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSQ 305
P S R RRR RSP + RR+SRS R SRS S + Q
Sbjct: 561 RSP------------SKERDRRRWRSPSKERE-RRQSRSSSEERDHSRSRSPNKQ 602
Score = 53.5 bits (127), Expect = 2e-07
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 20 KSSTRAPSPTK--RKDRSDEKSKDRSKDKGATKE-----SSEKDRGRDKTRKRHSASSGS 72
+S +R+PS + R+ RS K +DR + + +KE S RD +R R S + S
Sbjct: 545 RSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSR-SPNKQS 603
Query: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
+R R+SS + S + T S G+ S S +S S+ S S S+ SP +R
Sbjct: 604 GYSRPRASSKEKAHSRSRTPSKEGNHSQSRTS-------SKESDPSQSTVPRSPDWKRSP 656
Query: 133 NRRRSRSKSKPPKRDEKERKRRSPS 157
R S S+++ P + PS
Sbjct: 657 TRTSSLSQNRTPSKTSSHSPSTFPS 681
Score = 52.0 bits (123), Expect = 7e-07
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 17 NNKKSSTRAPSPTK----RKDRSDEKSKDRSKDKGATKE---------SSEKDRGR--DK 61
+ ++ R+ SP+K R+ RS K +DRS+ + ++E S E+DR R
Sbjct: 516 SKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSP 575
Query: 62 TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS------GSSSTSRSS 115
+++R S SSS S + S + SS A SRS G+ S SR+S
Sbjct: 576 SKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTS 635
Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
S S + R R +R+ S R + SPS P+
Sbjct: 636 SKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPS 681
Score = 51.2 bits (121), Expect = 1e-06
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 12/284 (4%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
++R +PT ++ S KS R + + S+ R K R SG + + +
Sbjct: 155 ASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQP-RNLSKKSYRPPGGSGIGRSSELAVT 213
Query: 82 TSSSGSSTSTGSSSGSSS---SSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSR 138
S++ T TG S S S +SSR S S S SP+ R + ++
Sbjct: 214 PSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQAS 273
Query: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH 198
++S+P + RRS S + H + + ++H T I + +M
Sbjct: 274 TRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGI------LSQMG 327
Query: 199 PHL-SKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRML 257
H S+ ++ + +N + + + + +E + + + R S PR+
Sbjct: 328 RHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKES 387
Query: 258 PPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
+ R RSRSP + R RSRSP + R RSRS S
Sbjct: 388 GRSQSGSPNKQRDHSRSRSPNKARD-RSRSRSPYKARDRSRSRS 430
Score = 45.1 bits (105), Expect = 8e-05
Identities = 70/320 (21%), Positives = 109/320 (34%), Gaps = 55/320 (17%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
K ++K S + APS + + K AT S +R + S S S
Sbjct: 5 KRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKS 64
Query: 75 TRSRSSSTSSSG--SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
T+S S+ + S SS S S + S S+ + +S S++S + SR R
Sbjct: 65 TKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTP 124
Query: 133 NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
RR SRS + P R + R+ +P G +
Sbjct: 125 GRRGSRSSKRSPSRASTPGRIRTHGARP------------------------GMASRVRT 160
Query: 193 PVERMHPHLSKGYACVEFENPDEAEKALKHMD-------GGQIDGQ--EITATVVLAPWP 243
P + K Y N + ++ +++ GG G+ E+ T A
Sbjct: 161 PTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQ 220
Query: 244 RPT---------------PRRFSPPRRMLPPPPMWLRSPPRMRRRSR-----SPRRRSPV 283
PT R+ +M+ P SP M R + S R R
Sbjct: 221 TPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQS 280
Query: 284 RRRSRSPGRRRHRSRSSSNS 303
+SRSP R R S+ ++S
Sbjct: 281 HSQSRSPRRSRSGSQKRTHS 300
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 17 NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH-SASSGSSST 75
+ +K+ +R+ +P+K + S ++ + D + D R TR S + S T
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKT 671
Query: 76 RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
S S ST SG T S S + A++ + RSSSSSS
Sbjct: 672 SSHSPSTFPSGGQTL---SQDDSQADATTSKATLPGERSSSSSS 712
Score = 37.0 bits (84), Expect = 0.022
Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 21 SSTRAPSPTKRKDRSDEKSKD--RSKDKGATKES--SEKDRGRDKTRKRHSASSGSSSTR 76
S RA S K RS SK+ S+ + ++KES S+ R KR + S S
Sbjct: 606 SRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQN 665
Query: 77 SRSSSTSSSGSST--STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
S TSS ST S G + S A + + ++ SSSSSS
Sbjct: 666 RTPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKATLPGERSSSSSS 712
Score = 35.0 bits (79), Expect = 0.083
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-------EKDRGRDKTRKRHS 67
+ ++S + + + RS K S+ + ++KE + K+ ++R
Sbjct: 578 ERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSK 637
Query: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGS-SSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S S ST RS S + TS+ S + + S +S+ S S S ++ S S +
Sbjct: 638 ESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQADATT 697
Query: 127 SRRRHDNRRRSRSKSK 142
S+ R S S SK
Sbjct: 698 SKATLPGERSSSSSSK 713
Score = 32.7 bits (73), Expect = 0.41
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST-------SRSSSSSSSSGSPSP 126
S+ RSS S S + + + + AS +S S+T ++ ++S +S SPS
Sbjct: 2 SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170
S+ + ++P R K R+PS T + ++
Sbjct: 62 SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASK 105
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 67.8 bits (164), Expect = 1e-11
Identities = 81/290 (27%), Positives = 114/290 (39%), Gaps = 54/290 (18%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRHSASSGSS 73
S +P + +R+ E S + D T E S+K++ RDK K+ +S S
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825
Query: 74 STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
S RS+SS S +S S + SS S S RS + S SRS SS S S SR R
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885
Query: 133 NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
+ R +S + +ERKR+ S + + + +R
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRT--------------------- 1924
Query: 193 PVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSP 252
P R H P ++ + G+ + ++ + R RR
Sbjct: 1925 PSRRSRSH-----------TPSRRRRS-------RSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 253 PRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGRRRHRSRS 299
P R P R+P RRSR+P RRS RRRSRS RRR S S
Sbjct: 1967 PSRRSRTPSRRSRTP---SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013
Score = 64.3 bits (155), Expect = 1e-10
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRH 66
K + +S TR+ S ++R+ RS S+ RSK +G S EK + R++ RKR
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909
Query: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S+ + R+RS + S S S + S RS S RS S S S S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960
Query: 127 SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
SRR RRSR+ +S+ P R + RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995
Score = 61.6 bits (148), Expect = 8e-10
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 13 GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRHSASS 70
G KE + SS R+ S KR S+ KS+ R+ + A K SS+ R +TR R +
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869
Query: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
S+RSRS S S S S + R S+SR + + + S +PSRR
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929
Query: 131 HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
+ RRRSRS +S+ P R + RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974
Score = 56.6 bits (135), Expect = 3e-08
Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 16 ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS-SGSSS 74
E +KK+ R ++K S +S+ + K R + RKR S S S S
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860
Query: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
TRSRS S SS S S G S S R S S S S SR DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915
Query: 135 RRSRSKSKPPKRDEK----ERKRRSPS 157
+ R++S+ P R + R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942
Score = 52.0 bits (123), Expect = 7e-07
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
K + V + +K S + S ++ + R S+D K + ++ S + R +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938
Query: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
S S G R RS S S S S + S + S + + S S T S + S S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994
Query: 126 PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
PSRRR RRRS S S R + RR S P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034
Score = 45.1 bits (105), Expect = 8e-05
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
+K+ ++N K R+ +P++R + RS+ G + S R +T R
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963
Query: 67 SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
S + S S T SR S T S S T + S + S SRS S S S S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSR-TPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022
Query: 126 PSRRRHD----NRRRSRS--KSKPPKR 146
P RRR R+RSRS + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049
Score = 33.5 bits (75), Expect = 0.24
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 270 MRRRSRSPRRRSPV-----RRRSRSPGRRRHRSRSSSNSSQ 305
+R RSR+P RRS RRRSRS GRRR S S S S+
Sbjct: 1918 VRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSR 1958
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 271 RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
+R S+S RS R RSRS RRR SRS S S
Sbjct: 1849 KRSSKSKSHRSQTRSRSRSR-RRRRSSRSRSKS 1880
Score = 28.9 bits (63), Expect = 5.9
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 265 RSPPRMRRR-SRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302
RS R RR S+ R+RSP + RS+S R+R RS S N
Sbjct: 1877 RSKSRGRRSVSKEKRKRSP-KHRSKSRERKRKRSSSRDN 1914
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 265 RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSQ 305
RS R RRRS R +S RR R RSP R R R RSSS ++
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 67.8 bits (164), Expect = 1e-11
Identities = 81/290 (27%), Positives = 114/290 (39%), Gaps = 54/290 (18%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRHSASSGSS 73
S +P + +R+ E S + D T E S+K++ RDK K+ +S S
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825
Query: 74 STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
S RS+SS S +S S + SS S S RS + S SRS SS S S SR R
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885
Query: 133 NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
+ R +S + +ERKR+ S + + + +R
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRT--------------------- 1924
Query: 193 PVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSP 252
P R H P ++ + G+ + ++ + R RR
Sbjct: 1925 PSRRSRSH-----------TPSRRRRS-------RSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 253 PRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGRRRHRSRS 299
P R P R+P RRSR+P RRS RRRSRS RRR S S
Sbjct: 1967 PSRRSRTPSRRSRTP---SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013
Score = 64.3 bits (155), Expect = 1e-10
Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRH 66
K + +S TR+ S ++R+ RS S+ RSK +G S EK + R++ RKR
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909
Query: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S+ + R+RS + S S S + S RS S RS S S S S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960
Query: 127 SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
SRR RRSR+ +S+ P R + RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995
Score = 61.6 bits (148), Expect = 8e-10
Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)
Query: 13 GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRHSASS 70
G KE + SS R+ S KR S+ KS+ R+ + A K SS+ R +TR R +
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869
Query: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
S+RSRS S S S S + R S+SR + + + S +PSRR
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929
Query: 131 HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
+ RRRSRS +S+ P R + RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974
Score = 56.6 bits (135), Expect = 3e-08
Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 16 ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS-SGSSS 74
E +KK+ R ++K S +S+ + K R + RKR S S S S
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860
Query: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
TRSRS S SS S S G S S R S S S S SR DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915
Query: 135 RRSRSKSKPPKRDEK----ERKRRSPS 157
+ R++S+ P R + R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942
Score = 52.0 bits (123), Expect = 7e-07
Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
K + V + +K S + S ++ + R S+D K + ++ S + R +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938
Query: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
S S G R RS S S S S + S + S + + S S T S + S S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994
Query: 126 PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
PSRRR RRRS S S R + RR S P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034
Score = 45.1 bits (105), Expect = 8e-05
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
+K+ ++N K R+ +P++R + RS+ G + S R +T R
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963
Query: 67 SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
S + S S T SR S T S S T + S + S SRS S S S S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSR-TPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022
Query: 126 PSRRRHD----NRRRSRS--KSKPPKR 146
P RRR R+RSRS + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049
Score = 33.5 bits (75), Expect = 0.24
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 270 MRRRSRSPRRRSPV-----RRRSRSPGRRRHRSRSSSNSSQ 305
+R RSR+P RRS RRRSRS GRRR S S S S+
Sbjct: 1918 VRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSR 1958
Score = 29.3 bits (64), Expect = 4.5
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 271 RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
+R S+S RS R RSRS RRR SRS S S
Sbjct: 1849 KRSSKSKSHRSQTRSRSRSR-RRRRSSRSRSKS 1880
Score = 28.9 bits (63), Expect = 5.9
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 265 RSPPRMRRR-SRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302
RS R RR S+ R+RSP + RS+S R+R RS S N
Sbjct: 1877 RSKSRGRRSVSKEKRKRSP-KHRSKSRERKRKRSSSRDN 1914
Score = 28.5 bits (62), Expect = 7.7
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 265 RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSQ 305
RS R RRRS R +S RR R RSP R R R RSSS ++
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 67.4 bits (163), Expect = 2e-11
Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 26/238 (10%)
Query: 22 STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKD----------RGRDKTRK-RHSASS 70
++R+ SP R D D + + R++++ +D RGR R +HS S
Sbjct: 185 ASRSRSPN-RFDAHDPRYEPRAREQFTLPSVVHRDIYRDDITREVRGRRPERNYQHSRSR 243
Query: 71 GSSSTRSRSSSTSSSGSSTS------TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS- 123
S++SR+ S S S +GS S S SSS+ S S SSSTS SS SSSS S
Sbjct: 244 SPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSD 303
Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST 183
SP+ R + S+ EK+ R+S K + + R T KD + F
Sbjct: 304 DSPA-RSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPV-RSTDTSLKDGLFHEFKK 361
Query: 184 YGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAP 241
+GK+ + ++H + Y V F ++ EKAL G G +I T + P
Sbjct: 362 FGKVTSV-----QIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGP 414
Score = 35.0 bits (79), Expect = 0.083
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 50 KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
+E S + R R++ R+R + R R S S S G+S S A S
Sbjct: 693 REYSYRQRERERERERFESDRDRDHER-RPIERSQSPVHLRRPQSPGASPSQAERLPSDS 751
Query: 110 ST---SRSSSSSSSSGSPSPSR----------RRHDNRRRSRSKSKPPKRDEKERK 152
SRSS S S S SP R R N + + ++ P+R E+ER+
Sbjct: 752 ERRLYSRSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERR 807
Score = 35.0 bits (79), Expect = 0.083
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 17/134 (12%)
Query: 42 RSKDKGATKESSEKDRGRDKTRK------------RHSASSGSSSTRSRSSSTSSSGSST 89
R +++ +E E DR RD R+ R + S S R S S +
Sbjct: 698 RQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQAERLPSDSERRLYS 757
Query: 90 STGSSSGSSSSSASSRSGSSSTSR-----SSSSSSSSGSPSPSRRRHDNRRRSRSKSKPP 144
+ SGS SS + R SR + + + P R + R + K +
Sbjct: 758 RSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERRLIRKEKVEKD 817
Query: 145 KRDEKERKRRSPSP 158
K D+++RK + SP
Sbjct: 818 KTDKQKRKGKVHSP 831
Score = 33.9 bits (76), Expect = 0.18
Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 64/270 (23%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
+ N + S +R+P ++ +++S ++ ++ + S R R + S+SS +SS
Sbjct: 234 ERNYQHSRSRSPHSSQSRNQSPQRLASQAS-RPTRSPSGSGSRSRSSSSDSISSSSSTSS 292
Query: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS--------------RSSSSSSS 120
S SSS+SS S + S+ + ++ S RS+ +S
Sbjct: 293 DSSDSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLK 352
Query: 121 SG-----------------SPSPSR------RRHDNRRRSRSKSK--------------- 142
G S R R+ +++ ++ + SK
Sbjct: 353 DGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWI 412
Query: 143 -PPKRDEKERKRRSPS-----PKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE 195
P E E + PK T+ + IG L + T + IF +G+I ID+
Sbjct: 413 GPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKV 472
Query: 196 RMHPHLSKGYACVEFENPDEAEKALKHMDG 225
P YA +++ + KA+K MDG
Sbjct: 473 NGVPQ----YAFLQYCDIASVCKAIKKMDG 498
Score = 32.7 bits (73), Expect = 0.41
Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 19 KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT----------RKRHSA 68
+ +T P S + K ++ G+ ++ KD G DK K+ +
Sbjct: 2010 RPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTDKNPPETAPVEVVEKKPAP 2069
Query: 69 SSGSSSTRSRS--SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
S S R RS S + S++ + S A++++G + + S S SP
Sbjct: 2070 EKNSKSKRGRSRNSRLAVDKSASLKNVDAAVSPRGAAAQAGERESGVVAVSPEKSESP-- 2127
Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKR----RSPSPKPTKV 163
+ ++ S+ KS P D++ K PSP+ T++
Sbjct: 2128 ---QKEDGLSSQLKSDPVDPDKEPEKEDVSASGPSPEATQL 2165
Score = 31.6 bits (70), Expect = 0.91
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 265 RSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSSNSS 304
RSP + R++SP+R S R +RSP RSRSSS+ S
Sbjct: 243 RSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDS 283
Score = 28.9 bits (63), Expect = 5.9
Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 15/148 (10%)
Query: 21 SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
++ R P K + R+DE+ ++ +K+ T + E G R + +A+ G
Sbjct: 1946 TTPRRGRPPKTRRRADEEEENEAKEPAETLKPPE---GWRSPRSQKTAAGG--------- 1993
Query: 81 STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
G ++ A++ G + SS + + +R+ + +
Sbjct: 1994 --GPQGKKGKNEPKVDATRPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTD 2051
Query: 141 SKPPKRDEKERKRRSPSP-KPTKVHIGR 167
PP+ E + P+P K +K GR
Sbjct: 2052 KNPPETAPVEVVEKKPAPEKNSKSKRGR 2079
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 67.0 bits (162), Expect = 2e-11
Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 17/161 (10%)
Query: 5 GVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRK 64
G +KS E + S + + D DE+ +DR + TK+ +E G D+
Sbjct: 953 GKHRKSFALDSEGEEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEE-- 1010
Query: 65 RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
S S+ S S G + ST S SSSSS+SS SSS+S SSSSSSSS
Sbjct: 1011 -------SDSSSKCSLYADSDGENDSTSDSESSSSSSSSS---SSSSSSSSSSSSSSSES 1060
Query: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHI 165
S + R + + PP R+ P+P P +V +
Sbjct: 1061 SSEDEEEEERPAALPSASPPPREVP-----VPTPAPVEVPV 1096
Score = 55.5 bits (132), Expect = 6e-08
Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 6 VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
VK+K + E +++ R +P + + E+ K+ + + ++D R KT+ +
Sbjct: 895 VKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGK 954
Query: 66 H-----------SASSGSSS--------------TRSRSSSTSSSGSSTSTGSSSGSSSS 100
H AS SSS R + T+ + S G S SS
Sbjct: 955 HRKSFALDSEGEEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEESDSS 1014
Query: 101 S-----ASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
S A S + STS S SSSSSS S S S + S S+S +E+ER
Sbjct: 1015 SKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAAL 1074
Query: 156 PSPKP 160
PS P
Sbjct: 1075 PSASP 1079
Score = 54.3 bits (129), Expect = 1e-07
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 39 SKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSS 98
S+D + T S + R + + S S+S+ S ++ST+ + ++ +T SSS SS
Sbjct: 282 SQDSAYSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASS 341
Query: 99 SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
SS +SS S SSS+S S SS + P+ R R S PP+R +E +P
Sbjct: 342 SSLSSSSSSSSSSSSSQFRSSDANYPA---YYESWNRYQRHTSYPPRRATREEPPGAPFA 398
Query: 159 KPT 161
+ T
Sbjct: 399 ENT 401
Score = 49.3 bits (116), Expect = 4e-06
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 17/164 (10%)
Query: 16 ENNKKSSTRAPSPTKRKDRSDEKSKDRSK-----------DKGATKESSEKDRGRDKTRK 64
E K++ TK R +E+ K + K ++ + + SSEKD D+ +
Sbjct: 926 EQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQESSSEKDEEDDEEDE 985
Query: 65 RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGS---SSSSASSRSGSSSTSRSSSSSSSS 121
+ T + + S S SS S S + + S +S SSSSSSSS
Sbjct: 986 EDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSS 1045
Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHI 165
S S S + S S S+ + +E+ S SP P +V +
Sbjct: 1046 SSSSSS---SSSSSSSESSSEDEEEEERPAALPSASPPPREVPV 1086
Score = 35.4 bits (80), Expect = 0.063
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 66 HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR-SGSSSTSRSSSSSSS--SG 122
+S+S+ S+S + R S S + + S+ S+S++AS+ + +++ + SSS+SSS S
Sbjct: 287 YSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASSSSLSS 346
Query: 123 SPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
S S S ++ RS + P + R +R S P +
Sbjct: 347 SSSSSSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRR 386
Score = 30.4 bits (67), Expect = 2.0
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 50 KESSEKDRGRDK-TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
K SEK +G T S SS T + + T++ G+ G+ +S +SSR +
Sbjct: 198 KALSEKFQGSGAATETAESRRRSSSDTAAYPAGTTAVGTP-GNGTPCSQDTSFSSSRQDT 256
Query: 109 SSTSRSSSSSSSSGSPSPSR 128
S+ + SS G+P SR
Sbjct: 257 PSSFGQFTPQSSQGTPYTSR 276
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 66.6 bits (161), Expect = 3e-11
Identities = 85/301 (28%), Positives = 116/301 (38%), Gaps = 33/301 (10%)
Query: 15 KENNKKSSTRAPSPTKRKD---RSDEKSKDRSKDKGATKESSEK-DRGRDKTRKRHSASS 70
+ ++ +SS+R+ S ++R RS ++ RS+ ++ S + R R + R RHS
Sbjct: 388 RTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGR-RHSGGG 446
Query: 71 GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
R S G S S S S R G SSS S SS S SPSR R
Sbjct: 447 SRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSR 506
Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF--------S 182
R RS S S R + +SPSP P + +LTR + E
Sbjct: 507 SLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAR---EKLTRPAASPAVGEKLKKTEPAAGK 563
Query: 183 TYGKIKMIDMPVERMHPHLSKGYACVEFENPDEA--EKALKHMDGGQIDGQEITATVVLA 240
G K P E++ + K +F+ +A EK ++ Q E+ A
Sbjct: 564 ETGAAKPKLTPQEKLKLRMQKALN-RQFKADKKAAQEKMIQQEHERQEREDELRAMA--- 619
Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
R R W R + R+SRSP SP R S RRR RSRS
Sbjct: 620 -----RKIRMKERERREKEREEWER---QYSRQSRSP---SPRYSREYSSSRRRSRSRSR 668
Query: 301 S 301
S
Sbjct: 669 S 669
Score = 51.6 bits (122), Expect = 9e-07
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 16 ENNKKSSTRAPSPTKRKDR----------SDEKSKDRSKDKGATKESSEKDR-------- 57
E++ +S +R+ SPT ++ SDE++ + A+ ++ K
Sbjct: 306 ESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGP 365
Query: 58 --GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGS---SSSSASSRSGSSSTS 112
GR+ + +R S+SS SSS+ SR+SS+ SS S+S G S A SRS S S S
Sbjct: 366 APGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRS 425
Query: 113 RSS----SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
RS S S S G D R SRS P +R +RRS S
Sbjct: 426 RSRSRRYSRSRSRGRRHSGGGSRDGHRYSRS---PARRGGYGPRRRSRS 471
Score = 49.7 bits (117), Expect = 3e-06
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 7 KKKSLLGVKENNKKSSTRAPSPTK---RKDRSDEKSKDRSKDKGATKESSEKDR------ 57
++K L G ++ + S R SPT ++ S+ S+ RS+ + T EK
Sbjct: 275 REKRLRG-RKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFG 333
Query: 58 GRDKTRKRHSASSGSS--STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSS 115
G D+ +A++ +S +T + G + +S+ SSS+SS S +S TS S
Sbjct: 334 GSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSR 393
Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRN 171
SSS SS + + R +RS+S+ R +R S S + H G +R+
Sbjct: 394 SSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRD 449
Score = 48.5 bits (114), Expect = 7e-06
Identities = 75/299 (25%), Positives = 113/299 (37%), Gaps = 50/299 (16%)
Query: 13 GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK----GATKESSEKDRGR-------DK 61
G + + + +R+ S ++ + RS S+ RS+ + G +++ R +
Sbjct: 407 GYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPR 466
Query: 62 TRKRHSASSGSSSTRS----RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
R R + SG R R S+S S SS S S S + + S S S S SRS S
Sbjct: 467 RRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSR 526
Query: 118 S-SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK-- 174
S S S SPSP+R + S + + K+ E + + + KP +L + K
Sbjct: 527 SRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKAL 586
Query: 175 DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEIT 234
+ + + KMI ER E DE + + + + +E
Sbjct: 587 NRQFKADKKAAQEKMIQQEHERQ-------------EREDELRAMARKIRMKERERREKE 633
Query: 235 ATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRR 293
W R R+ P PR R S RRRS R RSRSP R
Sbjct: 634 R----EEWERQYSRQSRSP-------------SPRYSREYSSSRRRS--RSRSRSPHYR 673
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 66.6 bits (161), Expect = 3e-11
Identities = 61/175 (34%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 2 DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKS-KDRSKDKGATK-ESSEKDRGR 59
D G K +S KE + S S +K +S+E + K+ S DKG + SSE R
Sbjct: 55 DNEGRKHRSRSRSKEGRRHESKDKSS---KKHKSEEHNDKEHSSDKGRERLNSSENGEDR 111
Query: 60 DKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS----SSTSRSS 115
K RK +S G S +RSRS S S S SRS S S SRS
Sbjct: 112 HK-RKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170
Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER----------KRRSPSPKP 160
S S SR RH +R RSRS+++ RD K+R R+PSP P
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPP 225
Score = 58.2 bits (139), Expect = 9e-09
Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRDKTRKRHSASSGSS 73
K + +S +R+ ++ D K + RS+ K G ES +K + K+ + + S
Sbjct: 37 KHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSD 96
Query: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
R R +S S +G SS + SRS S S S S S SR R +
Sbjct: 97 KGRERLNS-SENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKS 155
Query: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRN 171
R RSR + K R +ERKRR S ++ TR+
Sbjct: 156 RSRSRERKKSRSR-SRERKRRIRSRSRSRSRHRHRTRS 192
Score = 57.8 bits (138), Expect = 1e-08
Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSS- 73
K +N+ R+ S +K R + SKD+S K ++E ++K+ DK R+R ++S
Sbjct: 53 KSDNEGRKHRSRSRSKEGRRHE--SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGED 110
Query: 74 --------STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
S+R RS S S S S S + SR S SRS S
Sbjct: 111 RHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170
Query: 126 PSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
+RR +R RSRS+ + R + RS K R +R++++
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSR 219
Score = 53.9 bits (128), Expect = 2e-07
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 15 KENNKKSSTRAPSPTKRK---DRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSG 71
++ K+ S + SP K RS +S++R K K + + R R K +RH S
Sbjct: 20 RDKKKEQSEVSVSPRASKHHYSRSRSRSRER-KRKSDNEGRKHRSRSRSKEGRRHE-SKD 77
Query: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
SS + +S + S+ G +SS + R R SS S RRH
Sbjct: 78 KSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRH--KRKERKSSRGRSHSRSRSRERRH 135
Query: 132 DNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
+R R R KS+ R+ K+ + RS K ++
Sbjct: 136 RSRSRERKKSRSRSRERKKSRSRSRERKKSR 166
Score = 50.1 bits (118), Expect = 2e-06
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 25 APSPTKRKDRSDEK-SKDRSKDKG---------ATKESSEKDRGRDKTRKRHSASSGSSS 74
A S T+R + EK S DR K K A+K + R R + RKR S + G
Sbjct: 2 AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61
Query: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR-RHDN 133
RSRS S + SS S + + SS R +SS +G R+ R +
Sbjct: 62 -RSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSS 120
Query: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
R RS S+S+ +ER+ RS S + K
Sbjct: 121 RGRSHSRSR-----SRERRHRSRSRERKK 144
Score = 43.9 bits (102), Expect = 2e-04
Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 22/211 (10%)
Query: 99 SSSASSRSG----SSSTSRSSSSSSSSGSPSP-SRRRHDNRRRSRSKSKPPKRDEKERKR 153
++S + R G +S R S S SP + + H +R RSRS+ + K D + RK
Sbjct: 2 AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61
Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
RS S GR R+ +KD K E S +
Sbjct: 62 RSRSRSKE----GR--RHESKD----------KSSKKHKSEEHNDKEHSSDKGRERLNSS 105
Query: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR-RMLPPPPMWLRSPPRMRR 272
+ E K + G+ + + R R R R RS R +
Sbjct: 106 ENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKS 165
Query: 273 RSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
RSRS R+ +R RSRS R RHR+RS S +
Sbjct: 166 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRT 196
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 265 RSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSR 298
RS R RR RSRS R RS R R+RS R R RSR
Sbjct: 168 RSRERKRRIRSRS-RSRSRHRHRTRSRSRTRSRSR 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.119 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,731,692
Number of Sequences: 37866
Number of extensions: 833350
Number of successful extensions: 41571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 1113
Number of HSP's that attempted gapping in prelim test: 11367
Number of HSP's gapped (non-prelim): 16312
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.