Guide to the Human Genome
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Search of human proteins with 113415498

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113415498 PREDICTED: similar to ribonucleic acid binding
protein S1 [Homo sapiens]
         (305 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...   604   e-173
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...   604   e-173
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...   604   e-173
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...   604   e-173
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...   601   e-172
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...   601   e-172
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...   589   e-168
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...   589   e-168
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         88   8e-18
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    80   2e-15
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     80   2e-15
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]       78   9e-15
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         78   9e-15
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     77   1e-14
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     76   4e-14
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           75   7e-14
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           75   7e-14
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        74   1e-13
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         74   2e-13
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         72   5e-13
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]      70   2e-12
gi|9558733 transformer-2 alpha [Homo sapiens]                          70   2e-12
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    69   4e-12
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          68   1e-11
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]           68   1e-11
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]           68   1e-11
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     67   2e-11
gi|55741677 SET domain containing 1A [Homo sapiens]                    67   2e-11
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    67   3e-11
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s...    67   3e-11

>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  604 bits (1557), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  604 bits (1557), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score =  604 bits (1557), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score =  604 bits (1557), Expect = e-173
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score =  601 bits (1549), Expect = e-172
 Identities = 304/305 (99%), Positives = 304/305 (99%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score =  601 bits (1549), Expect = e-172
 Identities = 304/305 (99%), Positives = 304/305 (99%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSSQ
Sbjct: 301 SNSSQ 305


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSS+
Sbjct: 301 SNSSR 305


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score =  589 bits (1518), Expect = e-168
 Identities = 299/305 (98%), Positives = 300/305 (98%)

Query: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60
           MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD
Sbjct: 1   MDLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD 60

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
           KTRKR SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS
Sbjct: 61  KTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120

Query: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180
           SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI
Sbjct: 121 SGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEI 180

Query: 181 FSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA 240
           FSTYGKIKMIDMPVERMHPHLSKGYA VEFENPDEAEKALKHMDGGQIDGQEITAT VLA
Sbjct: 181 FSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 240

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
           PWPRP PRRFSPPRRMLPPPPMW RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS
Sbjct: 241 PWPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300

Query: 301 SNSSQ 305
           SNSS+
Sbjct: 301 SNSSR 305


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 60/121 (49%), Positives = 72/121 (59%), Gaps = 9/121 (7%)

Query: 35  SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
           S  K+K RS+ +G         R R+KT K  S SS SSS+ S S+S+SS  SS+S  SS
Sbjct: 552 SKSKTKTRSRSRG---------RARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSS 602

Query: 95  SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
           S SSSSS+SS SGSSS   SSS+SSSS S S SR R  NR R   +S   KR +     R
Sbjct: 603 SRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLER 662

Query: 155 S 155
           S
Sbjct: 663 S 663



 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 55/114 (48%), Positives = 70/114 (61%), Gaps = 7/114 (6%)

Query: 49  TKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
           T     K + + ++R R  A + +S +RSRSSS+SSS SS+ST SSSGSSSSS SS S S
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSS-SSSSTSSSSGSSSSSGSSSSRS 605

Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEK-----ERKRRSPS 157
           SS+S SSS+S SS   S S     +  RSRS+ +   RD K     +RKRR  S
Sbjct: 606 SSSS-SSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS 658



 Score = 62.4 bits (150), Expect = 5e-10
 Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 27  SPTKRKDRSDEKSKDRSK-DKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSS 85
           S +K K RS  + + R+K  K  ++ SS        T     +SS S S+ SRSSS+SSS
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSS 611

Query: 86  GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPK 145
                  S+SGSSS  +SS + SSS SRS S           RR  D +RR  S      
Sbjct: 612 -------STSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS-----G 659

Query: 146 RDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
            +   +  +  S + TK    + +R+  K  I E
Sbjct: 660 LERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISE 693



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 51/157 (32%), Positives = 71/157 (45%), Gaps = 32/157 (20%)

Query: 27  SPTKRKDRSDEKSKDR-SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSS 85
           S TK + RS  +++++ SK +  +  SS        +    S+SSGSSS+RS SSS+SS+
Sbjct: 554 SKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613

Query: 86  GSSTSTGSSSGSSSSSASSRSGS----------------------SSTSRSSSSSSSSGS 123
             S+S  SSS S+SSS+ SRS S                      S   RS  SS    S
Sbjct: 614 SGSSSRDSSS-STSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSS 672

Query: 124 PSPSRRRHDNRRRSRSKS--------KPPKRDEKERK 152
                 +  N R  R +S        K   R E++RK
Sbjct: 673 RDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRK 709



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 45/137 (32%), Positives = 57/137 (41%), Gaps = 8/137 (5%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
           S     S  G   ++  SS+R+ S +     S   S+D S    ++ ES  + RGR   R
Sbjct: 584 SSSSTSSSSGSSSSSGSSSSRSSSSSS-SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR 642

Query: 64  KRHSASSGSSSTR-----SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
            R    S     R      RS  +S  GSS  T  S   +S S   RS S S SRS   S
Sbjct: 643 DRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISES-SRSGKRS 701

Query: 119 SSSGSPSPSRRRHDNRR 135
           S S     S R+ D RR
Sbjct: 702 SRSERDRKSDRK-DKRR 717



 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGAT--KESSEKDRGRDKTRKRHSASSGS 72
           +    KS +R+ S +     S   S   S   G++  + SS        +  R S+SS S
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTS 626

Query: 73  SSTRSRSSSTSSSGS---------STSTGSSSGSSSSSASSRSGSSSTSRSS--SSSSSS 121
           SS+ SRS S     +               +SG   S  SS+ GSS  ++ S   +S S 
Sbjct: 627 SSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSD 686

Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKR 153
              S S      +R SRS+ +  K D K+++R
Sbjct: 687 RKRSISESSRSGKRSSRSE-RDRKSDRKDKRR 717



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 232 EITATVVLAPWPRPTPRR--FSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
           E  +  VL P P+ T  +    P R+  P   + L   P     +  P  +S  + RSRS
Sbjct: 503 EDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKLTEVPVEPVLTVHPESKSKTKTRSRS 562

Query: 290 PGRRRH-----RSRSSSNSS 304
            GR R+     RSRSSS+SS
Sbjct: 563 RGRARNKTSKSRSRSSSSSS 582


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 61/187 (32%), Positives = 90/187 (48%), Gaps = 24/187 (12%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
            +TR P     K RS    +   +    + +  +  RGR+      S SSGS+ T   SSS
Sbjct: 1388 NTRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNS----RSVSSGSNRTSEASSS 1443

Query: 82   TSSSGSST--------------------STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
            +SSS SS+                    S+G S   SSSS+SS S SSS+S SSSS S S
Sbjct: 1444 SSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRS 1503

Query: 122  GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
             SPSP RR    RR S  +S    + ++  ++     +   V IG++   +T+  + + F
Sbjct: 1504 RSPSPRRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELKQRF 1563

Query: 182  STYGKIK 188
            S +G+I+
Sbjct: 1564 SVFGEIE 1570



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/33 (51%), Positives = 17/33 (51%)

Query: 266  SPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSR 298
            S  R R RS SPRRRS  RRR  S     H  R
Sbjct: 1497 SSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQR 1529


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 20/196 (10%)

Query: 71  GSSSTRSRSSSTSSSGSSTS---TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
           G   +RS S S S+ GS  S   T + S S   S  SRS S S S S S S  S     +
Sbjct: 10  GERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYT 69

Query: 128 RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT-KVHIGR--------------LTRNV 172
           R R  +R   RS+S+   RD + R   S SP  T + H+G               L+   
Sbjct: 70  RSRSRSRSHRRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYT 129

Query: 173 TKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQE 232
           T+  + E+FS YG I  + + V       S+G+A V FEN D+A++A +  +G ++DG+ 
Sbjct: 130 TERDLREVFSKYGPIADVSI-VYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 188

Query: 233 ITATVVLAPWPR-PTP 247
           I     +   P  PTP
Sbjct: 189 IRVDFSITKRPHTPTP 204



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/37 (54%), Positives = 20/37 (54%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
           RS    R RSR   RR   R RSRS   RR RSRS S
Sbjct: 51  RSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRSYS 87


>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
          Length = 1007

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 97/324 (29%), Positives = 118/324 (36%), Gaps = 86/324 (26%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG--- 58
           D +   K   L  +   K    R+P+  K K     KSKDR K      ES  +DRG   
Sbjct: 234 DQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSP-IINESRSRDRGKKS 292

Query: 59  ------RDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
                 R K++ R S S    S RS +        S S  +SSG  + S S R G S   
Sbjct: 293 RSPVDLRGKSKDRRSRSKERKSKRSETDKEKKPIKSPSKDASSGKENRSPSRRPGRSPKR 352

Query: 113 RSSS-----SSSSSGSP-----------SPSRRRHDNRRRSRSKSKPPKRDEKERKR-RS 155
           RS S      S  S SP           SPSR      RR++S+S   KR E ER+R  S
Sbjct: 353 RSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPG-RRAKSRSLERKRREPERRRLSS 411

Query: 156 PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDE 215
           P  +P    + R  R  +KD                 P+ R  P   +  +         
Sbjct: 412 PRTRPRDDILSR--RERSKD---------------ASPINRWSPTRRRSRS--------- 445

Query: 216 AEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSR 275
                                        P  RR   P R    P    RSP   RRR R
Sbjct: 446 -----------------------------PIRRRSRSPLRRSRSPRRRSRSP---RRRDR 473

Query: 276 SPRRRSPVRRRSRSPGRRRHRSRS 299
             R RS +RRRSRS G RR RSRS
Sbjct: 474 GRRSRSRLRRRSRSRGGRRRRSRS 497



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 82/320 (25%), Positives = 130/320 (40%), Gaps = 60/320 (18%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
           KK+S    KE  +  S +  S    +   ++ ++ +SK++  +K  S++ + +D+ RK  
Sbjct: 181 KKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARK-- 238

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
              S S + R RS        S +         S +  R  S   + S S      S SP
Sbjct: 239 ---SKSPTLRRRSQEKIGKARSPTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSP 295

Query: 127 SRRRHDNR-RRSRSKSKPPKRDEKERKRRSPSPKPTK-VHIGRLTRNVTKDHIMEIFSTY 184
              R  ++ RRSRSK +  KR E +++++ P   P+K    G+  R+ ++          
Sbjct: 296 VDLRGKSKDRRSRSKERKSKRSETDKEKK-PIKSPSKDASSGKENRSPSR---------- 344

Query: 185 GKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPR 244
                         P  S     +  +  D++ ++   +   +   Q  + +  L+P  R
Sbjct: 345 -------------RPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRR 391

Query: 245 PTPR-----RFSPPRRMLPPPPMWLRSPPR---MRRRSRSP-------------RRRSPV 283
              R     R  P RR L  P    R+ PR   + RR RS              R RSP+
Sbjct: 392 AKSRSLERKRREPERRRLSSP----RTRPRDDILSRRERSKDASPINRWSPTRRRSRSPI 447

Query: 284 RRRSRSPGRR----RHRSRS 299
           RRRSRSP RR    R RSRS
Sbjct: 448 RRRSRSPLRRSRSPRRRSRS 467



 Score = 59.3 bits (142), Expect = 4e-09
 Identities = 71/273 (26%), Positives = 107/273 (39%), Gaps = 33/273 (12%)

Query: 46  KGATKESSEKDRGRDKTRKRHSASSGSSSTRSR---------SSSTSSSGSSTSTGSSSG 96
           +G    S E+    +K R  + +S+ SSST+ +         +   S S S   T   S 
Sbjct: 138 QGYESGSEEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSD 197

Query: 97  SSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
              S          T+RS S     S SPS   +  D  R+S+S +   +  EK  K RS
Sbjct: 198 KKKSKGGIEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARS 257

Query: 156 PSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFEN--- 212
           P+    K+     +++  K  I+    +  + K    PV+       +     E ++   
Sbjct: 258 PTDDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRS 317

Query: 213 -PDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMR 271
             D+ +K +K        G+E  +       P   P R SP RR L P       P    
Sbjct: 318 ETDKEKKPIKSPSKDASSGKENRS-------PSRRPGR-SPKRRSLSP------KPRDKS 363

Query: 272 RRSRSPRRRSPVRRRSRSPGR-----RRHRSRS 299
           RRSRSP       ++S+SP R     RR +SRS
Sbjct: 364 RRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRS 396



 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 80/313 (25%), Positives = 122/313 (38%), Gaps = 51/313 (16%)

Query: 32  KDRSDEKSKDRSKDKGATKESSEKDR----GRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
           ++  +   K R+ ++ +T+ SS K +        T K+ S S     TR RS    S G 
Sbjct: 145 EEEGEIHEKARNGNRSSTRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGG 204

Query: 88  STSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNRRRSR-------- 138
                  +  S S    +S S S  S+S   +  S SP+  RR  +   ++R        
Sbjct: 205 IEIVKEKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVK 264

Query: 139 ----SKSKPPKR-----DEKERKRRSPSPKPTKVH-IGRLTRNVTKDHIMEIFSTYGKIK 188
               SKSK  K+     + + R R   S  P  +    +  R+ +K+   +   T  + K
Sbjct: 265 IEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETDKEKK 324

Query: 189 MIDMPVE-----------RMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
            I  P +              P  S     +  +  D++ ++   +   +   Q  + + 
Sbjct: 325 PIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSR 384

Query: 238 VLAPWPRPTPR-----RFSPPRRMLPPPPMWLRSPPR---MRRRSRSP-----RRRSPVR 284
            L+P  R   R     R  P RR L  P    R+ PR   + RR RS       R SP R
Sbjct: 385 TLSPGRRAKSRSLERKRREPERRRLSSP----RTRPRDDILSRRERSKDASPINRWSPTR 440

Query: 285 RRSRSPGRRRHRS 297
           RRSRSP RRR RS
Sbjct: 441 RRSRSPIRRRSRS 453



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 41/132 (31%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 15  KENNKKSSTRAPSPTKR-KDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSS 73
           +    KS +R  SP +R K RS E+ +   ++    + SS + R RD    R   S  +S
Sbjct: 375 RSKQSKSPSRTLSPGRRAKSRSLERKR---REPERRRLSSPRTRPRDDILSRRERSKDAS 431

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
                S +   S S     S S    S +  R   S   R     S S     SR R   
Sbjct: 432 PINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRRSRSRLRRRSRSRGGR 491

Query: 134 RRRSRSKSKPPK 145
           RRRSRSK K  K
Sbjct: 492 RRRSRSKVKEDK 503



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 4/173 (2%)

Query: 8   KKSLLGVKENNKKSST-RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
           +  +L  +E +K +S     SPT+R+ RS  + + RS  + +          R + R R 
Sbjct: 417 RDDILSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRGRR 476

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
           S S     +RSR      S S        GS S        SSS     +          
Sbjct: 477 SRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSEGMKVEQESSS---DDNLEDFDVEEED 533

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
                + RR  R       +   E    S   +P+       TR+ + D I+E
Sbjct: 534 EEALIEQRRIQRQAIVQKYKYLAEDSNMSVPSEPSSPQSSTRTRSPSPDDILE 586


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRS 77
           K+++T  P   +  +  D   + +S K K     S  + R R KT    +++S SS + S
Sbjct: 500 KEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSS 559

Query: 78  RSSSTSSSGSSTSTG-SSSGSSSSSASSRSGSSSTSRSSSSS-SSSGSPSPSRRRHDNRR 135
           RSSS S SGSS S   SSS SS SS SSR  S S SRS S S SSS SPSP+   H    
Sbjct: 560 RSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSI 619

Query: 136 RSRSKSKPP--KRDEKERKRRSPSPKP 160
           R++ +  PP  K  EK  K+ +P P P
Sbjct: 620 RTKGEPAPPPGKAGEKSVKKPAPPPAP 646



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 17/159 (10%)

Query: 6   VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
           VKK +         K++   P PTK  D  + + K+R            +   R +T   
Sbjct: 637 VKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPA----------RTPPRRRTLSG 686

Query: 66  HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSS--SSSSSGS 123
             + SGSS + S S S S S SS S+ SS+ SSSSSA S       +  +S  SS+SS S
Sbjct: 687 SGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRS 746

Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
           P+P++      R+ + KSK     ++E+++R  S +P K
Sbjct: 747 PAPAQ-----TRKEKGKSKKEDGVKEEKRKRDSSTQPPK 780



 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 48/147 (32%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 31  RKDRSDEKSKDRSKDKGATKESSEKDRGRD-KTRKRHSASSGSSSTRS--------RSSS 81
           R+ R  ++ K+R K+KG  K  S +   R  +  K+ +A++G    R+        RS S
Sbjct: 465 RQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKS 524

Query: 82  TSSS-GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD------NR 134
                G S S   +     +SASS S S+S+  SS SSS SGS S   R         + 
Sbjct: 525 PKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSS 584

Query: 135 RRSRSKSKPPKRDEKERKRRSPSPKPT 161
           R SR  S    R        SPSP PT
Sbjct: 585 RSSRHSSFSGSRSRSRSFSSSPSPSPT 611



 Score = 37.7 bits (86), Expect = 0.013
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 16/165 (9%)

Query: 21  SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
           +S+R+P+P + +     K K +SK +   KE   K     +  K     +G  S++  S+
Sbjct: 742 ASSRSPAPAQTR-----KEKGKSKKEDGVKEEKRKRDSSTQPPKSAKPPAGGKSSQQPST 796

Query: 81  STSSSGSSTSTGSS-----------SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
              +       G+            + ++   +  R   S   R S   +   + SP R 
Sbjct: 797 PQQAPPGQPQQGTFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPPAKRPNTSPDRG 856

Query: 130 RHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
             D +   R  S  P+R   +  +   +P   K  +   +++ +K
Sbjct: 857 SRDRKSGGRLGSPKPERQRGQNSKAPAAPADRKRQLSPQSKSSSK 901



 Score = 35.8 bits (81), Expect = 0.048
 Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 22/305 (7%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
           N ++         ++++R  E+ +DR +++   +   E++  RDK R+R          R
Sbjct: 400 NYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE--WERER 457

Query: 77  SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
           ++                          RS    + ++      + +  P  +R D  + 
Sbjct: 458 AKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKD 517

Query: 137 SRSKSKPPKR--------DEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIK 188
              +SK PK+            R+R++ +   +  +  R +   +         +  +  
Sbjct: 518 PWRRSKSPKKKLGVSVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRSRSS 577

Query: 189 MIDMPVERMHPHL----SKGYACVEFENPDEAEKALKHMDGGQIDGQ------EITATVV 238
                  R   H     S+  +     +P  +     H    +  G+      +     V
Sbjct: 578 SYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKGEPAPPPGKAGEKSV 637

Query: 239 LAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSR 298
             P P P P + +     +P P       PR  RR   P R  P RR     G     S 
Sbjct: 638 KKPAPPPAPPQATKTTAPVPEPTK--PGDPREARRKERPARTPPRRRTLSGSGSGSGSSY 695

Query: 299 SSSNS 303
           S S+S
Sbjct: 696 SGSSS 700



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 13/71 (18%)

Query: 244 RPTPRRFSPPRRMLPPPPMWLRSP-PRMRR---------RSRSPRRRSPVRRRSRSPGRR 293
           +P PR   PP R   PP     +  P+++R         RS+SP+++  V   S SP R 
Sbjct: 482 KPKPRSPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGV---SVSPSRA 538

Query: 294 RHRSRSSSNSS 304
           R R ++S++S+
Sbjct: 539 RRRRKTSASSA 549



 Score = 32.0 bits (71), Expect = 0.70
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 32  KDRSDEKSKDRSKDKGATKESSEKDRGR--------------DKTRKRHSASSGSSSTRS 77
           + R +   KDR     A + ++  DRG               ++ R ++S +  + + R 
Sbjct: 830 RKRYEPSDKDRQSPPPAKRPNTSPDRGSRDRKSGGRLGSPKPERQRGQNSKAPAAPADRK 889

Query: 78  RSSSTSSSGSSTSTG-SSSGSSSSSASSRSGSSST 111
           R  S  S  SS  T      S   +AS++SG +ST
Sbjct: 890 RQLSPQSKSSSKVTSVPGKASDPGAASTKSGKAST 924



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 3/134 (2%)

Query: 29  TKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSS 88
           T+ +   + + ++R +++   +   E++R RD+ R+R            R          
Sbjct: 393 TETEPYHNYRERERERERENRQRERERERERDRERERRQREREREREHERDKERQRRKEE 452

Query: 89  TSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP--PKR 146
                +                            SP P  R+ +  ++  + + P   + 
Sbjct: 453 WERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQPPSRQAEPPKKEAATTGPQVKRA 512

Query: 147 DE-KERKRRSPSPK 159
           DE K+  RRS SPK
Sbjct: 513 DEWKDPWRRSKSPK 526


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 8/145 (5%)

Query: 161 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKAL 220
           T + +  LT   + D +  +F  YG++  + +P +R +   S+G+A V F +  +AE A+
Sbjct: 14  TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-YTKESRGFAFVRFHDKRDAEDAM 72

Query: 221 KHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRR 280
             MDG  +DG+E+   V +A + RP     S   R  PPP  +        RRSRSPRRR
Sbjct: 73  DAMDGAVLDGRELR--VQMARYGRPPDSHHS---RRGPPPRRY--GGGGYGRRSRSPRRR 125

Query: 281 SPVRRRSRSPGRRRHRSRSSSNSSQ 305
              R RSRS  R R RSR S + S+
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSR 150



 Score = 65.5 bits (158), Expect = 6e-11
 Identities = 52/129 (40%), Positives = 67/129 (51%), Gaps = 13/129 (10%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
           S R P P +R        + RS  +     S  + R R ++R R+S S   S TRSRS S
Sbjct: 101 SRRGPPP-RRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRS 159

Query: 82  TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKS 141
           TS S S+  +      S SS+ SRS S S SRS S S     P P  +R +++ RSRSKS
Sbjct: 160 TSKSRSARRS-----KSKSSSVSRSRSRSRSRSRSRS-----PPPVSKR-ESKSRSRSKS 208

Query: 142 KPPKRDEKE 150
            PPK  E+E
Sbjct: 209 -PPKSPEEE 216



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 24  RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGS-------SSTR 76
           R+ SP +R+ RS  +S+ RS+ +  ++ S  K R R ++R R ++ S S       SS+ 
Sbjct: 118 RSRSPRRRR-RSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSV 176

Query: 77  SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
           SRS S S S S + +        S + SRS S   S     + SS
Sbjct: 177 SRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 5   GVKKKSLLGVKENNKKSSTRAPSPTK-RKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
           G + +S    + +  +S +R+ S ++ R  RS  +S+ RS+ +  +K  S          
Sbjct: 116 GRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRS---------- 165

Query: 64  KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
            R S S  SS +RSRS S S S S +    S   S S + S+S   S     + SS
Sbjct: 166 ARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVSS 221



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 47  GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
           G   +S    RG    R+      G  S   R    S S S + + S S S  S + SRS
Sbjct: 93  GRPPDSHHSRRG-PPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151

Query: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKV 163
            + S SRS+S S S+             RRS+SKS    R     + RS S  P  V
Sbjct: 152 RTRSRSRSTSKSRSA-------------RRSKSKSSSVSRSRSRSRSRSRSRSPPPV 195



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 105 RSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
           RS S    R S S S S S S SR R+     SRSKS+   R       +S S + +K  
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRY-----SRSKSRSRTRSRSRSTSKSRSARRSKSK 172

Query: 165 IGRLTRN 171
              ++R+
Sbjct: 173 SSSVSRS 179


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 80/299 (26%), Positives = 117/299 (39%), Gaps = 39/299 (13%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDE--KSKDRSKDKGATKESSEKDRGRDKTR- 63
           K +S    +  +KK  +R+PS  K + RS    KS+ +SKD+   K  +  + G+ K+R 
Sbjct: 231 KSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS 290

Query: 64  -KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG 122
             RH + S S S             S S G S   S   + SRS S   SRS S S S  
Sbjct: 291 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSK- 349

Query: 123 SPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFS 182
             S  +R+   R R  S+S+   R + ER R+  S + +K    +  +    D       
Sbjct: 350 --SKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDR------ 401

Query: 183 TYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPW 242
           +  +     +  ER H          + E   E+E A  + +                  
Sbjct: 402 SQSRSPSRSVSKEREHAKSESS----QREGRGESENAGTNQE------------------ 439

Query: 243 PRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
              T  R     +  P  P   RS  +   ++RS R +S  R  SRSP R R RS S S
Sbjct: 440 ---TRSRSRSNSKSKPNLPSESRSRSKSASKTRS-RSKSRSRSASRSPSRSRSRSHSRS 494



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 13  GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGS 72
           G +     S +R+ S ++ + R   KS+ RS   G++K S  K R R ++  R S S   
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRS---GSSKSSHSKSRSRSRSGSR-SRSKSR 233

Query: 73  SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
           S ++SRS S      S S   S   S S+  SRS S   +     ++ +     SR    
Sbjct: 234 SRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSR 293

Query: 133 NRRRSRSKSKPPKRDEKERKRRSPS 157
           ++ +S+S+S+  +R  +E KR S S
Sbjct: 294 HKSKSKSRSRSQERRVEEEKRGSVS 318



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 56/163 (34%), Positives = 74/163 (45%), Gaps = 32/163 (19%)

Query: 9   KSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSA 68
           + L G + N +K       P  R+ RS  +S+  S               R ++R RHS 
Sbjct: 158 EKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHS---------------RSRSRSRHSR 202

Query: 69  SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS--P 126
            S     RSRS S+ SS S + + S SGS S S   +S S S SRS S    S SPS   
Sbjct: 203 KS-----RSRSGSSKSSHSKSRSRSRSGSRSRS---KSRSRSQSRSRSKKEKSRSPSKEK 254

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKER-------KRRSPSPKPTK 162
           SR R  +  +SRSKSK    ++ +        K RSPS   +K
Sbjct: 255 SRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSK 297



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 41/115 (35%), Positives = 58/115 (50%), Gaps = 10/115 (8%)

Query: 4   SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTR 63
           S  KKK     KE+  +S +R+PS +  K+R   KS+   ++     E++    G ++  
Sbjct: 390 SSKKKK-----KEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENA----GTNQET 440

Query: 64  KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
           +  S S+  S     S S S S S++ T S S S S SAS RS S S SRS S S
Sbjct: 441 RSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS-RSPSRSRSRSHSRS 494



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 62/218 (28%), Positives = 89/218 (40%), Gaps = 35/218 (16%)

Query: 100 SSASSRSGSSSTSRS---------SSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD-EK 149
           S + SRS S S SRS         S SS SS S S SR R  +R RS+S+S+   R   K
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243

Query: 150 ERKRRSPSPKP--TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAC 207
           + K RSPS +   ++ H    +R+ +KD   E       +          H   SK  + 
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303

Query: 208 VEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP 267
            +    +E ++    +  G+   + +  +       R   R     R             
Sbjct: 304 SQERRVEEEKRG--SVSRGRSQEKSLRQS-------RSRSRSKGGSR------------- 341

Query: 268 PRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSQ 305
            R R RS+S  +R   R+RSR   R R RSRS S  S+
Sbjct: 342 SRSRSRSKSKDKRKG-RKRSREESRSRSRSRSKSERSR 378



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 26/185 (14%)

Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF 181
           GS    R  +  RR  R K  PP R E             ++ +  L+   +   + +  
Sbjct: 77  GSYGSGRSGYGYRRSGRDKYGPPTRTEY------------RLIVENLSSRCSWQDLKDYM 124

Query: 182 STYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAP 241
              G++   D    R      K    +EF +  + ++AL+ +DG +++G++I        
Sbjct: 125 RQAGEVTYADAHKGR------KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVE---- 174

Query: 242 WPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSP---VRRRSRSPGRRRHRSR 298
             +P  RR     R         RS    + RSRS   +S     R RSRS  R R +SR
Sbjct: 175 -DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSR 233

Query: 299 SSSNS 303
           S S S
Sbjct: 234 SRSQS 238



 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALK 221
           +V+IGRL+    +  +   F  YGKI  +D         L  GY  VEF++  +A+ A+ 
Sbjct: 3   RVYIGRLSYQARERDVERFFKGYGKILEVD---------LKNGYGFVEFDDLRDADDAVY 53

Query: 222 HMDGGQIDGQEI 233
            ++G  + G+ +
Sbjct: 54  ELNGKDLCGERV 65



 Score = 37.7 bits (86), Expect = 0.013
 Identities = 55/197 (27%), Positives = 74/197 (37%), Gaps = 28/197 (14%)

Query: 110 STSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLT 169
           S  R S S S S S S SR RH  + RSRS S      +   + RS S   +K      +
Sbjct: 179 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238

Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQID 229
           R+ +K           K +       R   H S G +    ++ D+AE+ +++ D     
Sbjct: 239 RSRSKKE---------KSRSPSKEKSRSRSH-SAGKS--RSKSKDQAEEKIQNNDN---- 282

Query: 230 GQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPR---MRRRSRSPRRRSPVRRR 286
                   V  P  R   R  S  +         +    R    R RS+    R   R R
Sbjct: 283 --------VGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQS-RSR 333

Query: 287 SRSPGRRRHRSRSSSNS 303
           SRS G  R RSRS S S
Sbjct: 334 SRSKGGSRSRSRSRSKS 350


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 20/171 (11%)

Query: 3   LSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSK---DRSKDKGATKESSEKDRGR 59
           L  V+ K   G +E+  +  ++        +   + SK   D S+++ + K+ S + R R
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR-RSR 203

Query: 60  DKTRKRHSASSGSSST------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
            K+R  HS SS  SS+      RSRS S SSS S + + SSS   S S  S+S SSS S 
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH 263

Query: 114 SSSSSS-----SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPK 159
             SSS      SS S SP R    NR+RSRS+S     D K+R+ RS SP+
Sbjct: 264 RGSSSPRKRSYSSSSSSPER----NRKRSRSRSS-SSGDRKKRRTRSRSPE 309



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 8/124 (6%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-EKDRGR-DKTRKRHSASSGS 72
           + ++ +SS+R+ SP+  + RS  +S+  S  +  ++ SS E+ R R  K+R    +  GS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266

Query: 73  SSTRSRSSSTSSSG------SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
           SS R RS S+SSS        S S  SSSG      +         RSSS SS SGS S 
Sbjct: 267 SSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSS 326

Query: 127 SRRR 130
           S+++
Sbjct: 327 SKKK 330



 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 10/146 (6%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
           KKKS    +  +K  S+ + S ++    S  +S+ RS+ + +   SS + R R  +R+R 
Sbjct: 195 KKKS--NRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSS---SSSQSRSRSSSRER- 248

Query: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
              S S  ++SRSSS S  GSS S    S SSSSS+  R+   S SRSSSS       + 
Sbjct: 249 ---SRSRGSKSRSSSRSHRGSS-SPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERK 152
           SR      R S   S    R   ++K
Sbjct: 305 SRSPERRHRSSSGSSHSGSRSSSKKK 330



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS- 108
           KES  ++   D+   ++             +  S      S    S    S+  SRS S 
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDED---DADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207

Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD---EKERKRRSPSPKPTKVHI 165
           SS SRSSS SS   SPS SR R  +R RS S S+   R    E+ R R S S   ++ H 
Sbjct: 208 SSHSRSSSRSS---SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264

Query: 166 G 166
           G
Sbjct: 265 G 265



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/40 (50%), Positives = 23/40 (57%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           +S  R R +SRS   RS  R  S S  R R RSRS S+SS
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 23/43 (53%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 266 SPPRMRRRSRSPRR----RSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP R R+RSRS       R   R RSRSP  RRHRS S S+ S
Sbjct: 280 SPERNRKRSRSRSSSSGDRKKRRTRSRSP-ERRHRSSSGSSHS 321



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP   R RSRS  R  S  + RSRS  R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)

Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           RS  R R RSR               SPR+RS     S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
           +  RRSRS  R S  R  SRS        R R RSRSSS+S
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 75.1 bits (183), Expect = 7e-14
 Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 20/171 (11%)

Query: 3   LSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSK---DRSKDKGATKESSEKDRGR 59
           L  V+ K   G +E+  +  ++        +   + SK   D S+++ + K+ S + R R
Sbjct: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR-RSR 203

Query: 60  DKTRKRHSASSGSSST------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
            K+R  HS SS  SS+      RSRS S SSS S + + SSS   S S  S+S SSS S 
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH 263

Query: 114 SSSSSS-----SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPK 159
             SSS      SS S SP R    NR+RSRS+S     D K+R+ RS SP+
Sbjct: 264 RGSSSPRKRSYSSSSSSPER----NRKRSRSRSS-SSGDRKKRRTRSRSPE 309



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-EKDRGR-DKTRKRHSASSGS 72
           + ++ +SS+R+ SP+  + RS  +S+  S  +  ++ SS E+ R R  K+R    +  GS
Sbjct: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266

Query: 73  SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
           SS R RS S+SSS S       S S SSS+  R    + SRS  S
Sbjct: 267 SSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)

Query: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS- 108
           KES  ++   D+   ++             +  S      S    S    S+  SRS S 
Sbjct: 151 KESEGEEEDEDEDLSKYKLDEDEDED---DADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207

Query: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD---EKERKRRSPSPKPTKVHI 165
           SS SRSSS SS   SPS SR R  +R RS S S+   R    E+ R R S S   ++ H 
Sbjct: 208 SSHSRSSSRSS---SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264

Query: 166 G 166
           G
Sbjct: 265 G 265



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 20/40 (50%), Positives = 23/40 (57%)

Query: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           +S  R R +SRS   RS  R  S S  R R RSRS S+SS
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           SP   R RSRS  R  S  + RSRS  R R RSR S + S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/55 (43%), Positives = 26/55 (47%), Gaps = 16/55 (29%)

Query: 265 RSPPRMRRRSR---------------SPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           RS  R R RSR               SPR+RS     S SP R R RSRS S+SS
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
           +  RRSRS  R S  R  SRS        R R RSRSSS+S
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 54/159 (33%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 10   SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
            +L   KE    SS+ + S +     S   S   S    +  E S      +   KR  + 
Sbjct: 2523 ALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSP 2582

Query: 70   SGSS------------STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
            + +             +   R   +SSS SS+S+ SSS SSSSS+SS S SSS+S SSSS
Sbjct: 2583 TPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2642

Query: 118  SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSP 156
            SSSS SPSP++       +  S  KPP  + + R  R P
Sbjct: 2643 SSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKP 2681



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 88/306 (28%), Positives = 122/306 (39%), Gaps = 34/306 (11%)

Query: 19  KKSSTRAPSPTKRKDRSDEK-------SKDRSKDKGATKESSEKDRGRDKTRK-RHSASS 70
           ++  +R+ +P +R  RS  +       S+ R+  +G ++  S   RGR  +R  +    S
Sbjct: 665 RRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRS 724

Query: 71  GSSSTRSRSSSTSSSGS-STSTGSSSGSSSSSASSRSGSSSTSRSSSSSS-----SSGSP 124
           GSSS R   S TS   S S S+     S  SS  SRS SS  S++ S  S     S  SP
Sbjct: 725 GSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSP 784

Query: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRR-----SPSPKPTKVHIGRLTRNVTKDHIME 179
            P ++     RRSRS S  PK   +   RR     SP PK       R + + +  H   
Sbjct: 785 CPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKV 844

Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA---LKHMDGGQIDGQEITAT 236
              T  +   I  P         +  +C E  +PD   K+    +H   G    +  ++ 
Sbjct: 845 KSGTPPRQGSITSPQANEQSVTPQRRSCFE-SSPDPELKSRTPSRHSCSGSSPPRVKSS- 902

Query: 237 VVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHR 296
                    TP R SP R   P P +     PR R  S S    SP R  SR+  RR   
Sbjct: 903 ---------TPPRQSPSRSSSPQPKVKAIISPRQRSHSGS-SSPSPSRVTSRTTPRRSRS 952

Query: 297 SRSSSN 302
               SN
Sbjct: 953 VSPCSN 958



 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 53/124 (42%), Positives = 69/124 (55%), Gaps = 12/124 (9%)

Query: 48   ATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG 107
            A KE+  + R  + T  +    S SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S 
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SS 2643

Query: 108  SSSTSRSSSSSSSSGSPSPS--RRRHDNRRRSRSKSKP--PKRDEK-------ERKRRSP 156
            SSS+S S +       P P+  ++     RRSRS  KP    RD +       ER+R SP
Sbjct: 2644 SSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703

Query: 157  SPKP 160
             P P
Sbjct: 2704 QPSP 2707



 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 92/317 (29%), Positives = 125/317 (39%), Gaps = 59/317 (18%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRK-----RHSASS 70
            E++    T A +P  ++ RS    +   K   + +E SE D   D   K     R  + S
Sbjct: 1520 ESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRS 1579

Query: 71   GSS---STRSR-SSSTSSSGSS--------TSTGSSSGSSSSSAS-----------SRSG 107
            GSS    ++SR S   S SGSS         +  + SGS SS              SRSG
Sbjct: 1580 GSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSG 1639

Query: 108  SSSTSRSSS---SSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
            SSS  R  S   SSS+  SP    +    RR SRS  +P  +     +RRS    P    
Sbjct: 1640 SSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTR 1699

Query: 165  IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMD 224
              RL+R           S+  + +    P  R  P +S         +P+ AEK+     
Sbjct: 1700 KARLSRR------SRSASSSPETRSRTPPRHRRSPSVS---------SPEPAEKS----- 1739

Query: 225  GGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVR 284
              +   +  +A+   +P  + T RR   P    P P    RS  R RR      RR    
Sbjct: 1740 --RSSRRRRSAS---SPRTKTTSRRGRSPS---PKPRGLQRSRSRSRREKTRTTRRRDRS 1791

Query: 285  RRSRSPGRRRHRSRSSS 301
              S+S  RRR RSRS S
Sbjct: 1792 GSSQSTSRRRQRSRSRS 1808



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 81/316 (25%), Positives = 126/316 (39%), Gaps = 46/316 (14%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH---SASSG 71
           K+++KK   R+ S +K++       K + K K   ++ S       K+R+ H   SA S 
Sbjct: 210 KKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSA 269

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSG----------SSSTSRSSSSSSSS 121
           SSS  SRS S S++ + T T + +G S S AS R G          ++ST R SS  +++
Sbjct: 270 SSSDTSRSRSRSAA-AKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETAT 328

Query: 122 GSPSPSRRRHDNRRRSRSKSKP---PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
             PS      D  ++ +S ++P   P+R     +  +P+P   + H G      T     
Sbjct: 329 KQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQ 388

Query: 179 EIFSTYGKIKMI-DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
           E  +   +     D    +    L +  +        +  K  +H            ++ 
Sbjct: 389 EPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRH-----------ASSS 437

Query: 238 VLAPWPRPTPRRFSPPRRMLPPPPMWLRS-------------PPRMRRRSRSPRRRSPVR 284
             +P P P P      R +   P    RS             P R   RSRSP      R
Sbjct: 438 PESPKPAPAP---GSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGR 494

Query: 285 RRSRSPGRRRH-RSRS 299
            RSR+P +R H RSRS
Sbjct: 495 SRSRTPTKRGHSRSRS 510



 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 83/298 (27%), Positives = 118/298 (39%), Gaps = 36/298 (12%)

Query: 17   NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGAT-----KESSEKDRGRDKTRKRHSASSG 71
            + +  S  +P P + K RS  + +  S  +  T     +  S K RG  ++R R S    
Sbjct: 1724 HRRSPSVSSPEPAE-KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR-SRREK 1781

Query: 72   SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
            + +TR R  S SS  +S     S   S  +   R GS   SRS +   SS       R  
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS-------RTS 1834

Query: 132  DNRRRSRSKSKPPKRDEKERKRRSPSP-KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
              RRR RS++ P  R ++ R R SP+P K ++      T   ++     I     + +  
Sbjct: 1835 SRRRRGRSRTPPTSR-KRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTS 1893

Query: 191  DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
             +   R     S         +   A    +     +        +    P  R   R  
Sbjct: 1894 PVSRRRSRSRTS----VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSR 1949

Query: 251  SPP---RRMLPPPPMWLRSPPRMRRRSRSPRRRSPV-RRRSRS----PGRRRHRSRSS 300
            +PP   RR         R+PP  RRRSRS  R SP+ RRRSRS      RRR RSR+S
Sbjct: 1950 TPPVTRRRSRS------RTPPVTRRRSRS--RTSPITRRRSRSRTSPVTRRRSRSRTS 1999



 Score = 62.0 bits (149), Expect = 6e-10
 Identities = 71/288 (24%), Positives = 119/288 (41%), Gaps = 35/288 (12%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSR 78
           ++  +R+ +P +R+ RS   ++ RS+ +   +    + R   + R R + S     +RSR
Sbjct: 580 RRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSR-TRSPVRRRSRSR 638

Query: 79  SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR---RHDNRR 135
           S +  S  S + T +  G S S   +R G S +   +  S  S S +P+RR   R    R
Sbjct: 639 SPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPR 698

Query: 136 RSRSKSKPPKRDEKERKRRSPSPKP-TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 194
           R RS+S+        R+ RS S  P  +   G  +    K    +  S        +M  
Sbjct: 699 RGRSRSR-----SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSP--EMKK 751

Query: 195 ERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR 254
            R+    S+  +     +  ++  +L+    G                P P  +  +PPR
Sbjct: 752 SRISSRRSRSLSSP--RSKAKSRLSLRRSLSGSS--------------PCPKQKSQTPPR 795

Query: 255 RM---LPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS 299
           R       P    R+PPR  R S SP    P +++S++P R+ H S S
Sbjct: 796 RSRSGSSQPKAKSRTPPRRSRSSSSP----PPKQKSKTPSRQSHSSSS 839



 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 84/321 (26%), Positives = 125/321 (38%), Gaps = 44/321 (13%)

Query: 24   RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSG---SSSTRSRSS 80
            R+ S ++R+     + +DRS    +T    ++ R R +  +R    SG    S  R  SS
Sbjct: 1772 RSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS 1831

Query: 81   STSSS---GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS---SSSGSPSPSRRRHDNR 134
             TSS    G S +  +S   S S  S      S SR+S ++   S S +P  SRRR  +R
Sbjct: 1832 RTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891

Query: 135  ------RRSRSKSKPPKRDEKER-----------------KRRSPSPKPTKVHIGR---- 167
                  RRSRS++   +R  + R                 +RRS S  PT     R    
Sbjct: 1892 TSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTP 1951

Query: 168  -LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGG 226
             +TR  ++     +  T  + +    P+ R     S+        +        +     
Sbjct: 1952 PVTRRRSRSRTPPV--TRRRSRSRTSPITRRRSR-SRTSPVTRRRSRSRTSPVTRRRSRS 2008

Query: 227  QIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRS--PRRRSPVR 284
            +     +T     +  P    RR      +LP      RSP  +RRRSRS  PR     R
Sbjct: 2009 RTS--PVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKR 2066

Query: 285  RRSRSPGRRRHRSRSSSNSSQ 305
              +RSP   R RS S S+S +
Sbjct: 2067 SLTRSPPAIRRRSASGSSSDR 2087



 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 69/252 (27%), Positives = 93/252 (36%), Gaps = 56/252 (22%)

Query: 68   ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127
            AS+G+    + ++   +    +S+ SSS SSSSS+SS S SSS+S  SSSS S GS  P 
Sbjct: 2511 ASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPV 2570

Query: 128  RRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKI 187
            +         R  S  P   E  R+ R P P P K    R  R+ +        S+    
Sbjct: 2571 Q---PEVALKRVPSPTPAPKEAVREGRPPEPTPAK----RKRRSSSSSSSSSSSSSSSSS 2623

Query: 188  KMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTP 247
                          S   +     +P  A+                       P P+  P
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAK-----------------------PGPQALP 2660

Query: 248  RRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRR------------RSPVRRR--SRSPGRR 293
            +  SP            + PP   RRSRSPR+             SPV RR  S  P  R
Sbjct: 2661 KPASP------------KKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPR 2708

Query: 294  RHRSRSSSNSSQ 305
              +S SS   S+
Sbjct: 2709 DQQSSSSERGSR 2720



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 77/296 (26%), Positives = 107/296 (36%), Gaps = 67/296 (22%)

Query: 27  SPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSG 86
           SPT+  DRS  KS ++     +++ S    +    +R   S+        +  S    S 
Sbjct: 398 SPTR--DRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISS 455

Query: 87  SSTSTGSSSG-----SSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRR-----R 136
           S TS   S G      S S   SR    S S +++    S S +P++R H   R     R
Sbjct: 456 SPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRR 515

Query: 137 SRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVER 196
           SRS  +  +    +R+ RS SP+                                     
Sbjct: 516 SRSAQRWGRSRSPQRRGRSRSPQ------------------------------------- 538

Query: 197 MHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRM 256
             P  S+            A +   H       G+  + T    P  R   R  +P RR 
Sbjct: 539 -RPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRT----PARRGRSRSRTPARRR 593

Query: 257 LPPPPMWLRSPPRMRRRSRSP------RRRSPVRRRS--RSPGRRRHRSRSSSNSS 304
                   R+P R R RSR+P      R R+P RRRS  RSP RRR RSRS +  S
Sbjct: 594 SRS-----RTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRS 644



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 91/327 (27%), Positives = 124/327 (37%), Gaps = 76/327 (23%)

Query: 15  KENNKKSSTRAPSPTK--RKDRSDEKSKDRSKDKGATKE------SSEKDRGRDKTRKRH 66
           + ++ +SS  +P PTK  R   S  +S   +   G+ +E      S  +  GR K  K H
Sbjct: 414 QSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSH 473

Query: 67  SASSGSSSTRSRSSSTSSSGSS-----TSTGSSSGSSSSSASSRS----GSSSTSRSSSS 117
           S +      RSRS +T+  G S     T  G S   S     SRS    G S + +    
Sbjct: 474 SHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533

Query: 118 SSSSGSPSPSRRRHDNRR------------------RSRSKSKPPKRDEKER-----KRR 154
           S S   P  SR R+  RR                  R RS+S+ P R  + R     +RR
Sbjct: 534 SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 593

Query: 155 SPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPD 214
           S S  PT+    R +R+ T                   P  R     S+  A        
Sbjct: 594 SRSRTPTR----RRSRSRT-------------------PARRGRSR-SRTPARRRSRTRS 629

Query: 215 EAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM--RR 272
              +  +     +  G+  + T    P  R   R  +P RR         R+P R   R 
Sbjct: 630 PVRRRSRSRSPARRSGRSRSRT----PARRGRSRSRTPARRGRSRS----RTPARRSGRS 681

Query: 273 RSRSPRRRSPVRRRSRSPGRRRHRSRS 299
           RSR+P RR   R RSR+P R R RSRS
Sbjct: 682 RSRTPARRG--RSRSRTPRRGRSRSRS 706



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 80/307 (26%), Positives = 122/307 (39%), Gaps = 26/307 (8%)

Query: 4    SGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRG---RD 60
            S  +++S    +        R+PSP   K R  ++S+ RS+ +  T+ +  +DR    + 
Sbjct: 1741 SSRRRRSASSPRTKTTSRRGRSPSP---KPRGLQRSRSRSR-REKTRTTRRRDRSGSSQS 1796

Query: 61   KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
             +R+R  + S S  TR R   +     S +   SS +SS     RS +  TSR  S S +
Sbjct: 1797 TSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRT 1856

Query: 121  SGSPSP-----SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKD 175
            S  P+P     SR      RRSRS++ P     + R R SP  +        +TR  ++ 
Sbjct: 1857 S--PAPWKRSRSRASPATHRRSRSRT-PLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913

Query: 176  HIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITA 235
                +     + +   +   R                P    +  +         +  + 
Sbjct: 1914 RASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973

Query: 236  TVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGR 292
            T  +    R +  R SP  R         R+ P  RRRSRS  R SPV   R RSR+P  
Sbjct: 1974 TSPIT--RRRSRSRTSPVTRRRSRS----RTSPVTRRRSRS--RTSPVTRRRSRSRTPPA 2025

Query: 293  RRHRSRS 299
             R RSRS
Sbjct: 2026 IRRRSRS 2032



 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 80/294 (27%), Positives = 114/294 (38%), Gaps = 26/294 (8%)

Query: 20   KSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH----SASSGSSST 75
            K+ +R P P +R  RS  +   +++    ++ +S     R +T  RH    S SS   + 
Sbjct: 1679 KTKSRTP-PRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAE 1737

Query: 76   RSRSSSTSSSGSS--TSTGSSSGSSSSS-------ASSRSGSSSTSRSSSSSSSSGSPSP 126
            +SRSS    S SS  T T S  G S S        + SRS    T  +     S  S S 
Sbjct: 1738 KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQST 1797

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGK 186
            SRRR   R RSRS+    +R       RSP+ + +     R  R   +           +
Sbjct: 1798 SRRRQ--RSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRG--RSRTPPTSRKRSR 1853

Query: 187  IKMIDMPVERMHPHLSKG-YACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRP 245
             +    P +R     S   +       P  + +  +         +  + T V     R 
Sbjct: 1854 SRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTR---RR 1910

Query: 246  TPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRS 299
            +  R SP  R         R+PP  RRRSRS    +  R RSR+P   R RSRS
Sbjct: 1911 SRSRASPVSRRRSRS----RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRS 1960



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 51/171 (29%), Positives = 68/171 (39%), Gaps = 35/171 (20%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
            KE  ++     P+P KRK RS   S   S    ++  SS             S+SS SSS
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSS---------SSSSSSSS 2637

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS------SSSSSSSGSPSPSR 128
            + S SSS+SSS S    G  +    +S          SRS      S   S S S SP  
Sbjct: 2638 SSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVE 2697

Query: 129  RR-----------------HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            RR                   +RR  R  S+ P     +R+R +PSP+P +
Sbjct: 2698 RRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSH---KRRRETPSPRPMR 2745



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 41/142 (28%), Positives = 54/142 (38%), Gaps = 3/142 (2%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGR--DKTRKRHSASSGSSSTR 76
           +++   AP P K      E S  RS      K+  +KDRGR  + +  R      S   +
Sbjct: 158 REAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKK 217

Query: 77  SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
            RS S S      S    S    S    R  S ST+ +  S  +  S S       +  R
Sbjct: 218 HRSESESKKRKHRSPTPKS-KRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276

Query: 137 SRSKSKPPKRDEKERKRRSPSP 158
           SRS+S   K        RSPSP
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSP 298



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 13/163 (7%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDK-TRKR 65
            +++S        ++S +RA   ++R+ RS      R + +  T  +  + R R     +R
Sbjct: 1897 RRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRR 1956

Query: 66   HSASSGSSSTRSRSSSTSS--------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
             S S     TR RS S +S        S +S  T   S S +S  + R   S TS  +  
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR 2016

Query: 118  SSSSGSPSPSRRRHDNRR----RSRSKSKPPKRDEKERKRRSP 156
             S S +P   RRR  +R     R RS+S+ P    +  + R+P
Sbjct: 2017 RSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTP 2059



 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 1/140 (0%)

Query: 18   NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKE-SSEKDRGRDKTRKRHSASSGSSSTR 76
            +++ S    S T+R+ RS      R + +  T   +  + R R  T +R S S     TR
Sbjct: 1896 SRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTR 1955

Query: 77   SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
             RS S +   +   + S +   +   S    S  T R S S +S  +   SR R     R
Sbjct: 1956 RRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTR 2015

Query: 137  SRSKSKPPKRDEKERKRRSP 156
             RS+S+ P    +  + R+P
Sbjct: 2016 RRSRSRTPPAIRRRSRSRTP 2035



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 27/164 (16%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
           + +K+ +R      R + S E  K R   + +   SS + + + +   R S S  S   +
Sbjct: 728 SERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPK 787

Query: 77  SRSSST---SSSGSSTSTGSSS-----GSSSSSASSRSGSSSTSRSSSSSSS------SG 122
            +S +    S SGSS     S        SSSS   +  S + SR S SSSS      SG
Sbjct: 788 QKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSG 847

Query: 123 SP-------SPSRRRHD--NRRRSRSKSKPPKRDEKERKRRSPS 157
           +P       SP         +RRS  +S P    + E K R+PS
Sbjct: 848 TPPRQGSITSPQANEQSVTPQRRSCFESSP----DPELKSRTPS 887



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 64/268 (23%), Positives = 88/268 (32%), Gaps = 42/268 (15%)

Query: 64  KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
           K +S    SSS+RS +            G  S SSS     +  S      S S S    
Sbjct: 169 KPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESK--- 225

Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS--PSPKPTKVHIGRLTRNVTKDHIMEIF 181
               +R+H   R    KSK   +D+K ++ RS  P+PK  + H      + +        
Sbjct: 226 ----KRKH---RSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSR 278

Query: 182 STYGKIKMIDMPVERMHPHLSKGY-----------ACVEFENPDEAEKALKH----MDGG 226
           S     K     +    P  + G                 + P   E A K      +  
Sbjct: 279 SRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDK 338

Query: 227 QIDGQEITATVVLAPWPRPTPRRFSP-PRRMLPPP---------PMWLRSPPRMRRRSRS 276
             D +E +AT      P P+P R S  P    P P         P  L + P  +     
Sbjct: 339 DKDKKEKSAT-----RPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNP 393

Query: 277 PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           P   SP R RS      +    SSS SS
Sbjct: 394 PSEASPTRDRSPPKSPEKLPQSSSSESS 421



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 81/339 (23%), Positives = 118/339 (34%), Gaps = 73/339 (21%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD---KTRKRHSASSGSSST 75
            K+ STR+   +     S E S D  +  G +   S      D   +T  R  +SS SS  
Sbjct: 1372 KEQSTRSSGHS-----SSELSPDAVEKAGMSSNQSISSPVLDAVPRTPSRERSSSASSPE 1426

Query: 76   RSRS---SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG------SPSP 126
                   + +  S S +S G   GS + S  S SGSS   +    + S G      SP P
Sbjct: 1427 MKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEP 1486

Query: 127  SRRRHDNRRRSRSKSKP--------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHI- 177
                   R RSRS S P        P+R+    +         +  +G+ +R+ +   + 
Sbjct: 1487 KALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELD 1546

Query: 178  --------------------------MEIFSTYGKIKMIDMPVERMHPHLSKGYACVEF- 210
                                      +   S  G    +D    R+ P  S+  +  E  
Sbjct: 1547 VKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSK-SRLSPRRSRSGSSPEVK 1605

Query: 211  ENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPR--RFSPPRRMLPPPPMWLRS-- 266
            + P  A +A    D         ++    AP PR  PR  R     +   P P    S  
Sbjct: 1606 DKPRAAPRAQSGSD---------SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 1656

Query: 267  -----PPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
                 PP+ R   R  R     + +SR+P RRR  SRSS
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRR-SSRSS 1694



 Score = 37.4 bits (85), Expect = 0.017
 Identities = 64/271 (23%), Positives = 98/271 (36%), Gaps = 29/271 (10%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT-----RKRHSASSGSS 73
            ++S +R    T+R+ RS      R + +  T   + + R R +T     R+  S +    
Sbjct: 1980 RRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTPPAIRRRSRSRTPLLP 2038

Query: 74   STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS---PSRRR 130
              RSRS S  +    + + +   +    + +RS  +   RS+S SSS  S S   P+ R 
Sbjct: 2039 RKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRN 2098

Query: 131  HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
            H   R         +     R   SP+P       G L    +    M +    G   M+
Sbjct: 2099 HSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSSRTPMSVLQQAGG-SMM 2157

Query: 191  DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
            D P  R+  H          EN  ++  AL            +TA  +    P P+    
Sbjct: 2158 DGPGPRIPDHQRTSVP----ENHAQSRIAL-----------ALTAISLGTARPPPSMSAA 2202

Query: 251  SPPRRM----LPPPPMWLRSPPRMRRRSRSP 277
                RM     P P M LR+ P     SR P
Sbjct: 2203 GLAARMSQVPAPVPLMSLRTAPAANLASRIP 2233



 Score = 36.2 bits (82), Expect = 0.037
 Identities = 49/190 (25%), Positives = 70/190 (36%), Gaps = 34/190 (17%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATK------ESSEKDRGRD 60
            K+KS    ++++  SS      +    R    +  ++ ++  T       ESS     + 
Sbjct: 824  KQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKS 883

Query: 61   KTRKRHSASSGS-----SSTRSRSSSTSSSGS--------STSTGSSSGSSSSSASSRSG 107
            +T  RHS S  S     SST  R S + SS          S    S SGSSS S S  + 
Sbjct: 884  RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTS 943

Query: 108  SSSTSRSSS---------------SSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERK 152
             ++  RS S               S S S SP    +     R+S S S  P    K + 
Sbjct: 944  RTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQT 1003

Query: 153  RRSPSPKPTK 162
               PS   +K
Sbjct: 1004 PPGPSLSGSK 1013



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 47   GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
            G + E  E   G    +     S       +RSS  SSS  S      +G SS+ + S  
Sbjct: 1346 GFSSEVKEDLNGPFLNQLETDPSLDMKEQSTRSSGHSSSELSPDAVEKAGMSSNQSISSP 1405

Query: 107  GSSSTSRSSSSSSSSGSPSPSRRRHDNR---RRSRSKSKPPKRD 147
               +  R+ S   SS + SP  +    R   RRSRS S P  RD
Sbjct: 1406 VLDAVPRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRD 1449



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 41/140 (29%), Positives = 53/140 (37%), Gaps = 11/140 (7%)

Query: 23   TRAPSPTKRKDRSDEKSKDRSKDKGATKESSE---KDRGRDKTRKR-HSASSGSSSTRSR 78
            +R PS       S  + K  +  + +   SS    K +     R+R HS SS  S +R  
Sbjct: 883  SRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVT 942

Query: 79   SSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS-------SSSSSSSGSPSPSRRRH 131
            S +T     S S  S+  S      S SGSSS             S S S SP P  +  
Sbjct: 943  SRTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQ 1002

Query: 132  DNRRRSRSKSKPPKRDEKER 151
                 S S SK P   EK +
Sbjct: 1003 TPPGPSLSGSKSPCPQEKSK 1022



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 36/134 (26%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 44   KDKGATKESSEKDRGRDKTRKRHSASSGSSST--------RSRSSSTSSSGSSTST-GSS 94
            K +  T      D    + R+ HS S    S         RSRSSS  +  +S S     
Sbjct: 1058 KGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQD 1117

Query: 95   SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSK-----PPKRD-- 147
             G  S+S   +SG S       S SSS     S       R   ++SK     PP+ D  
Sbjct: 1118 RGEFSASPMLKSGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDAT 1177

Query: 148  ---EKERKRRSPSP 158
                +++ + SP P
Sbjct: 1178 ASPPRQKDKFSPFP 1191



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 101 SASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERK----RRSP 156
           S S   GSS   +  +  +   +P P +     R  S S+S  PK+ +K++K    RRS 
Sbjct: 142 SDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSE 201

Query: 157 SPKPTK 162
           S  P +
Sbjct: 202 SSSPRR 207


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 47/103 (45%), Positives = 62/103 (60%)

Query: 21   SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
            SS+ + S +   +   E+  D++ D G             +     S+SS SSS+ S SS
Sbjct: 2568 SSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSS 2627

Query: 81   STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
            S+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670



 Score = 73.2 bits (178), Expect = 3e-13
 Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSK---DKGATKESSEKDRGRDKTRKRHSAS 69
            G +E+   SS+ + S +     S   S+   +   DK          R       R ++ 
Sbjct: 2553 GAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612

Query: 70   SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR 129
            + SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S  
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672

Query: 130  RHDNRRRSRSKSKPP 144
              ++   S      P
Sbjct: 2673 TDEDSSCSSDDEAAP 2687



 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 49/136 (36%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 18   NKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRS 77
            N KS  +A +     + S+  S   S    ++  SS      +   +      G   T  
Sbjct: 2540 NPKSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGG 2599

Query: 78   RSSSTSSS-----GSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            R+ S +SS      SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS S S S     
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659

Query: 133  NRRRSRSKSKPPKRDE 148
            +   S S S     DE
Sbjct: 2660 SSSSSSSSSSSSTTDE 2675



 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 17   NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTR 76
            N   +S+RA SP      S   S   S    ++  SS              +SS SSS+ 
Sbjct: 2601 NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSSSSSS 2646

Query: 77   SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRR 136
            S SSS+SSS SS+S+ SSS SSSSS +    S S+   ++ + ++G PS          +
Sbjct: 2647 SSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG-PSAQAALPTKATK 2705

Query: 137  SRSKSKP----PKRDEKERKRRSPSPKPTK 162
               K++P    P +     + ++P P+PT+
Sbjct: 2706 QAGKARPSAHSPGKKTPAPQPQAPPPQPTQ 2735



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 55/160 (34%), Positives = 69/160 (43%), Gaps = 43/160 (26%)

Query: 40   KDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS--------------- 84
            +D    K   K  +E+D G +++    S+SSGSSS    SSS+SS               
Sbjct: 2536 EDSGNPKSPDKAQAEQD-GAEESESSSSSSSGSSS----SSSSSSSSGSETEGEEEGDKN 2590

Query: 85   -----------------------SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
                                   S SS+S+ SSS SSSSS+SS S SSS+S SSSSSSSS
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2650

Query: 122  GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
             S S S     +   S S S     D         +P PT
Sbjct: 2651 SSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPT 2690



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
            G   T   S +  S   + +    +  S SS+SS SGSSS   SSSSSSSSGS +     
Sbjct: 2530 GPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSS---SSSSSSSSGSETEGEEE 2586

Query: 131  HD 132
             D
Sbjct: 2587 GD 2588



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 36/198 (18%)

Query: 81  STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
           S + S  +   G SSG+ +  +SSR G +        +   G P P   + D R R    
Sbjct: 178 SHAPSARTPGGGHSSGAPAKGSSSRDGPAK-----ERAGRGGEPPPLFGKKDPRARGEEA 232

Query: 141 SKP-------PKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME---IFSTYGKIKMI 190
           S P        +   + R+ R P P+  +     L  + TK+  ++   +    G    +
Sbjct: 233 SGPRGVVDLTQEARAEGRQDRGP-PRLAERLSPFLAESKTKNAALQPSVLTMCNGGAGDV 291

Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
            +P            A V       A++A +  +G ++    +  T  L P PRP P   
Sbjct: 292 GLP------------ALVAEAGRGGAKEAARQDEGARL----LRRTETLLPGPRPCPSPL 335

Query: 251 SPPRRMLPPPPMWLRSPP 268
            PP    P PP    +PP
Sbjct: 336 PPP----PAPPKGPPAPP 349



 Score = 32.3 bits (72), Expect = 0.54
 Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 36/151 (23%)

Query: 43   SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102
            S+ K    ++++ D  ++         SG+  +  ++ +       + + SSS S SSS+
Sbjct: 2511 SEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSS 2570

Query: 103  SSRSGSS------------------------------------STSRSSSSSSSSGSPSP 126
            SS S SS                                    S+S SSSSSSSS S S 
Sbjct: 2571 SSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSS 2630

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
            S     +   S S S             S S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2661



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 248  RRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
            RR S  RR  P   +  R P R R+R+ +P   SP R+R +S
Sbjct: 1507 RRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKS 1548



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 30   KRKDRSDEKSKDR--SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
            K K R   K + R  S+D+      S   RG  + RKR  A S  S  R R  S  SSG 
Sbjct: 1495 KEKQRELVKLQRRRDSEDRREEPHRSLARRGPGRPRKRTHAPSALSPPRKRGKSGHSSGK 1554

Query: 88   STS 90
             +S
Sbjct: 1555 LSS 1557


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 72.4 bits (176), Expect = 5e-13
 Identities = 96/356 (26%), Positives = 127/356 (35%), Gaps = 92/356 (25%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKD----------RSKDKGATKESSEKDRGRDKTRK 64
           K+  +K  TR  S ++ K RS  +S+           RS+ +  +       R R   R+
Sbjct: 266 KKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRR 325

Query: 65  RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS---- 120
           R          R R S +       S+ S SGSSSSS+SSRS S        +SS     
Sbjct: 326 RTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT 385

Query: 121 ---SGSPSPSRRRH--------------------DNRRRSRSKSKPPKRDE--------- 148
              S S SP RRRH                     NR R    S  P R           
Sbjct: 386 RRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGT 445

Query: 149 KERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE----RMHPHLSKG 204
           ++R+  SP+PKP KV +     +             GK+   D   +    R     S  
Sbjct: 446 EKRESPSPAPKPRKVELSESEED-----------KGGKMAAADSVQQRRQYRRQNQQSSS 494

Query: 205 YACVEFENPDEAEKALKHMDGGQIDGQEITATVVLA--------------------PWPR 244
            +     + DE  K   H+  G++  +   +    A                    P P 
Sbjct: 495 DSGSSSSSEDERPKR-SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP 553

Query: 245 PTPRRFS-----PPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRH 295
           PT RR S     PPRR   P P     PPR R  S  PRRRSP  RR   P +RR+
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTP-----PPRRRTPSPPPRRRSPSPRRYSPPIQRRY 604



 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 80/289 (27%), Positives = 105/289 (36%), Gaps = 56/289 (19%)

Query: 28  PTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGS 87
           P+   +   E+ K R  ++       ++D  +DK  K    SS     RSRS     S  
Sbjct: 120 PSAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKS-- 177

Query: 88  STSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD 147
                S S    SS   R    S SRS    + S SPSP+  +         K K P+  
Sbjct: 178 ----RSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEK---------KEKTPELP 224

Query: 148 EKERKRRSPS-------------PKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV 194
           E   K + PS             PKP  +          K+   E  S   K K    P 
Sbjct: 225 EPSVKVKEPSVQEATSTSDILKVPKPEPI-------PEPKEPSPEKNSKKEKEKEKTRPR 277

Query: 195 ERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR 254
            R     SK  +     +P       +H    +   +  +     +P  RP+PRR +PPR
Sbjct: 278 SRSR---SKSRSRTRSRSPSHTRPRRRH----RSRSRSYSPRRRPSPRRRPSPRRRTPPR 330

Query: 255 RMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
           RM PPP              R  R RSPVRRR RS       S SSS+S
Sbjct: 331 RMPPPP--------------RHRRSRSPVRRRRRSSASLSGSSSSSSSS 365



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 81/319 (25%), Positives = 119/319 (37%), Gaps = 64/319 (20%)

Query: 8   KKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-------DRGRD 60
           +K  L   E +K     A    +++ +   +++  S D G++  S ++         G  
Sbjct: 458 RKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEV 517

Query: 61  KTRKRHSAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
             R+RHS S S S S R R   TS  G    + S   +    + S +      R+ +   
Sbjct: 518 GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPP 577

Query: 120 SSGSPSPS--RRRHDNRR------RSRSKSKPPKR-----DEKERKRRSPSPKPTKVHIG 166
              +PSP   RR    RR      R  S S PPKR         ++R SPSP P +    
Sbjct: 578 RRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR---- 633

Query: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPV-ERMHPHLSKGYACVEFENPDEAEKALKHMDG 225
           R++ +                K    PV +R  P LS                  KH  G
Sbjct: 634 RVSHSPPP-------------KQRSSPVTKRRSPSLSS-----------------KHRKG 663

Query: 226 GQIDGQEITATVVLAPWPR----PTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRS 281
                    A    +P P     P+PR  +P     PPP     S    RR+S SP  R 
Sbjct: 664 SSPSRSTREAR---SPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTR- 719

Query: 282 PVRRRSRSPGRRRHRSRSS 300
           P+RR SR+P  ++ +  +S
Sbjct: 720 PIRRVSRTPEPKKIKKAAS 738



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 63/309 (20%), Positives = 114/309 (36%), Gaps = 32/309 (10%)

Query: 6   VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRD----K 61
           ++++ L  +K+ ++    R     K +  S  + ++RS+     K  S   R R     +
Sbjct: 136 IEQEKLASMKKQDEDKDKR----DKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRR 191

Query: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
            RKR  + S    T+SRS S +      +      S      S   ++STS         
Sbjct: 192 ERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPE 251

Query: 122 GSP---SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIM 178
             P    PS  ++  + + + K++P  R   + + R+ S  P+     R  R+ ++ +  
Sbjct: 252 PIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSP 311

Query: 179 EIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA-----LKHMDGGQIDGQEI 233
                         P  R  P   +         P    ++      +      + G   
Sbjct: 312 R-----------RRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSS 360

Query: 234 TATV--VLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPG 291
           +++     +P  +P  R  SPPR+     P    SPPR R R   P    P  R S +P 
Sbjct: 361 SSSSSRSRSPPKKPPKRTSSPPRKTRRLSPS--ASPPRRRHRPSPPATPPPKTRHSPTP- 417

Query: 292 RRRHRSRSS 300
           ++ +R+R S
Sbjct: 418 QQSNRTRKS 426



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 84/330 (25%), Positives = 114/330 (34%), Gaps = 49/330 (14%)

Query: 10  SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
           SL G   ++  S +R+P     K  S    K R     A   S  + R R          
Sbjct: 354 SLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSA---SPPRRRHRPSPPATPPPK 410

Query: 70  SGSSSTRSRSSSTSSSGSSTSTGSSSG------------SSSSSASSRSGSSSTSRSSSS 117
           +  S T  +S+ T  S  S S G +SG            S S +   R    S S     
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 470

Query: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHI 177
              + + S  +RR   R+  +S S        E +R    PK + V  G + R       
Sbjct: 471 GKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDER----PKRSHVKNGEVGRRRRHSPS 526

Query: 178 MEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATV 237
                +  K +    P  R     S         +P  A    +         +   +  
Sbjct: 527 RSASPSPRKRQKETSPRGRRRRSPSPP-PTRRRRSPSPAPPPRRRRTPTPPPRRRTPS-- 583

Query: 238 VLAPWPR---PTPRRFSPP-------------RRMLPPPPMWLR---SPPRMRRRSRSP- 277
              P PR   P+PRR+SPP             R   PPPP   R   SPP  RR S SP 
Sbjct: 584 ---PPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640

Query: 278 --RRRSPVRRRSRSPG-RRRHRSRSSSNSS 304
             +R SPV  + RSP    +HR  SS + S
Sbjct: 641 PKQRSSPVT-KRRSPSLSSKHRKGSSPSRS 669



 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 45/184 (24%)

Query: 19  KKSSTRAPSPTKR-------KDRSDEKSKDRSKD------KGATKESSEKDRGRDKTRKR 65
           K+ ++ +P P +R       K RS   +K RS        KG++   S ++    +  KR
Sbjct: 622 KRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKR 681

Query: 66  HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS------------------- 106
           HS S      R R+  TSSS      G+SS      + S S                   
Sbjct: 682 HSPSP-----RPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKA 736

Query: 107 ---GSSSTSRSSSSSSSSGSPSPSRRR-----HDNRRRSRSKSKPPKRDEKERKRRSPSP 158
                 S  R SSS S SGSP P+ ++        + +S S +  P    K+ K  +PSP
Sbjct: 737 ASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSP 796

Query: 159 KPTK 162
            P +
Sbjct: 797 SPPR 800



 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 50/216 (23%), Positives = 87/216 (40%), Gaps = 11/216 (5%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
           ++ +P P +R   S  +   R     +T+      R  +  + + +AS    S R  SSS
Sbjct: 693 TSSSPPPVRRGASSSPQR--RQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSS 750

Query: 82  TSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRS---SSSSSSSGSPSPSR---RRHDNRR 135
            S SGS         +  S   S+S S++ S +     + S + SPSP R   +    ++
Sbjct: 751 RSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKK 810

Query: 136 RSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE 195
           + + K K  K+D+K +K +    K  K         VT   I    +T  + + +  P  
Sbjct: 811 KKKKKDKKHKKDKKHKKHK--KHKKEKAVAAAAAAAVTPAAIAAATTTLAQEEPVAAPEP 868

Query: 196 RMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQ 231
           +     S+    ++       EKAL+ M   Q+  Q
Sbjct: 869 KKETE-SEAEDNLDDLEKHLREKALRSMRKAQVSPQ 903



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 45/148 (30%), Positives = 61/148 (41%), Gaps = 17/148 (11%)

Query: 19  KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSE---KDRGRDKTRKRHSASSGSSST 75
           K+ +   P P KR+       K R       K+ S    K R    + K    SS S ST
Sbjct: 611 KRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRST 670

Query: 76  R-SRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
           R +RS   +   S +    +  +SSS    R G      +SSS     SPSPS R     
Sbjct: 671 REARSPQPNKRHSPSPRPRAPQTSSSPPPVRRG------ASSSPQRRQSPSPSTR----P 720

Query: 135 RRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            R  S++  PK   K +K  SPSP+  +
Sbjct: 721 IRRVSRTPEPK---KIKKAASPSPQSVR 745



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 19  KKSSTRAPSPTKRKDRSDE---KSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSST 75
           KK+ +  PSP+  ++   E   K K + KDK   K+   K   + K  K  +A++ ++ T
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVT 846

Query: 76  RSRSSSTSSS 85
            +  ++ +++
Sbjct: 847 PAAIAAATTT 856


>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
          Length = 164

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 57/154 (37%), Positives = 74/154 (48%), Gaps = 22/154 (14%)

Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
           R   P   KV++G L  N  K  +   F  YG ++ +   V R  P    G+A VEFE+P
Sbjct: 3   RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPP----GFAFVEFEDP 56

Query: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSP-PRMRR 272
            +A  A++ +DG  + G  +   V L+   + +  R         PPP W R P    RR
Sbjct: 57  RDAADAVRELDGRTLCGCRVR--VELSNGEKRSRNR--------GPPPSWGRRPRDDYRR 106

Query: 273 RSRSPRRRSPVRR-----RSRSPGRRRHRSRSSS 301
           RS  PRRRSP RR     RSRS  R R R RS S
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLS 140



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 24  RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR---HSASSGSSSTRSRSS 80
           R+P P +R  R    S+ RS+       S  +DR R+++  R   H  S   S +RSRS 
Sbjct: 107 RSPPPRRRSPRRRSFSRSRSR-------SLSRDRRRERSLSRERNHKPSRSFSRSRSRSR 159

Query: 81  S 81
           S
Sbjct: 160 S 160


>gi|9558733 transformer-2 alpha [Homo sapiens]
          Length = 282

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 80/289 (27%), Positives = 121/289 (41%), Gaps = 52/289 (17%)

Query: 53  SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
           S+ +    + R+  S S   + T +R  S S SGS + +  S  S S S S RS S S S
Sbjct: 2   SDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRS-RSKSRSRS 60

Query: 113 RSSSSSSSSGSPSPS---RRRHDNR------RRSRSKSKPPKRDEKERKRRSPSPKP-TK 162
           R  S    + S S S   RRR  +R      RR RS+S  P  + +       +P P T 
Sbjct: 61  RRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTC 120

Query: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKH 222
           + +  L+   T+  + E+FS YG +  +++ V       S+G+A V FE  D++++A++ 
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNV-VYDQRTGRSRGFAFVYFERIDDSKEAMER 179

Query: 223 MDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRM------------ 270
            +G ++DG+ I     +              R   P P +++  P               
Sbjct: 180 ANGMELDGRRIRVDYSIT------------KRAHTPTPGIYMGRPTHSGGGGGGGGGGGG 227

Query: 271 ----RRR------------SRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
               RRR             R        RRRS SP   R+RSRS S S
Sbjct: 228 GGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRS 276



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/36 (55%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 269 RMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
           R R  S S RRRS  R RS +P  RR RSRS S  S
Sbjct: 70  RSRSHSHSHRRRS--RSRSYTPEYRRRRSRSHSPMS 103



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/85 (25%), Positives = 28/85 (32%)

Query: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
           T++ H+ + G    R   S     G     G   G    S   R       R        
Sbjct: 197 TKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRY 256

Query: 122 GSPSPSRRRHDNRRRSRSKSKPPKR 146
              SPS      R RSRS+S  P+R
Sbjct: 257 RRRSPSPYYSRYRSRSRSRSYSPRR 281


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 46/106 (43%), Positives = 58/106 (54%), Gaps = 5/106 (4%)

Query: 58  GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
           G D  R  H++SS SSS+ S SSS+SSS SS+S+ SSS SSSSS+SS S SS++      
Sbjct: 139 GGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHK 198

Query: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRD-EKERKRRSPSPKPTK 162
                   PS+    + R  +S  K P RD  K  K  S  PK  K
Sbjct: 199 LMKEHKEKPSK----DSREHKSAFKEPSRDHNKSSKESSKKPKENK 240



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 40/101 (39%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 64  KRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS 123
           +R    +G    RS  +S+SSS       SSS SSSSS+SS S SSS+S SSSSSSSS S
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSS-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184

Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVH 164
            S S     ++     K    K  +  R+ +S   +P++ H
Sbjct: 185 SSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDH 225



 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 42/129 (32%), Positives = 52/129 (40%), Gaps = 12/129 (9%)

Query: 44  KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103
           K  G    S         +    S+SS SSS+ S SSS+SSS SS+S+ SSS S+S S  
Sbjct: 137 KAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKP 196

Query: 104 SRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP------------PKRDEKER 151
            +       + S  S    S      R  N+    S  KP            PK   KE 
Sbjct: 197 HKLMKEHKEKPSKDSREHKSAFKEPSRDHNKSSKESSKKPKENKPLKEEKIVPKMAFKEP 256

Query: 152 KRRSPSPKP 160
           K  S  PKP
Sbjct: 257 KPMSKEPKP 265



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 28/78 (35%), Positives = 36/78 (46%)

Query: 99  SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
           +SS+SS S SSS+S SSSSSSSS S S S     +   S S S    +  K  K     P
Sbjct: 148 TSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKP 207

Query: 159 KPTKVHIGRLTRNVTKDH 176
                      +  ++DH
Sbjct: 208 SKDSREHKSAFKEPSRDH 225



 Score = 40.0 bits (92), Expect = 0.003
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 17/140 (12%)

Query: 27  SPTKRKDRSDEKSKDRSKDKGATKE----------------SSEKDRGRDKTRKRHSASS 70
           +P+KR   SD +     K K ++ E                S++K + +DK+  +     
Sbjct: 280 APSKRPPISDSEELSAKKRKKSSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVK 339

Query: 71  GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
             S T  +  ST          + S     + SS+S S   S +SSSSSSS S +PS+ R
Sbjct: 340 IESETSEKKKSTLPPFDDIVDPNDS-DVEENISSKSDSEQPSPASSSSSSSSSFTPSQTR 398

Query: 131 HDNRRRSRSKSKPPKRDEKE 150
                RS  K      +E+E
Sbjct: 399 QQGPLRSIMKDLHSDDNEEE 418



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 39/159 (24%), Positives = 53/159 (33%), Gaps = 5/159 (3%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRD 60
           +LS  K+K      E   KS + AP          ++ KD+S  K G  K  SE    + 
Sbjct: 292 ELSAKKRKK--SSSEALFKSFSSAPPLILTCSADKKQIKDKSHVKMGKVKIESETSEKKK 349

Query: 61  KTRKRHS--ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
            T            S      SS S S   +   SSS SSSS   S++      RS    
Sbjct: 350 STLPPFDDIVDPNDSDVEENISSKSDSEQPSPASSSSSSSSSFTPSQTRQQGPLRSIMKD 409

Query: 119 SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
             S          ++        +P  R     +R S S
Sbjct: 410 LHSDDNEEESDEVEDNDNDSEMERPVNRGGSRSRRVSLS 448


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 85/326 (26%), Positives = 126/326 (38%), Gaps = 71/326 (21%)

Query: 14  VKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK-----DRGRDKTRK---- 64
           VK  N+ +STR+   +  + RS  +S+  S+ +  ++  S        R R +TRK    
Sbjct: 266 VKSYNQ-ASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILS 324

Query: 65  ---RHSASSGSSSTRSRSSS-TSSSGSSTSTGSSSGSSSSSASSRSGS-------SSTSR 113
              RHS S   S  +S++ S T   G S +   +     S + SRS S       SS+ R
Sbjct: 325 QMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPR 384

Query: 114 SSSSSSSSGSPSP----SRRRHDNRRRSRSKSKPPKRDEKERKRRSP----------SPK 159
             S  S SGSP+     SR R  N+ R RS+S+ P +     + RSP          SP 
Sbjct: 385 KESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPY 444

Query: 160 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKA 219
             +      + N  +DH                         S+  +  +  +   +   
Sbjct: 445 KARDRSRSRSPNKARDH-------------------------SRSRSPNKARDRSRSRSP 479

Query: 220 LKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRR 279
            K  D  Q+           +P      RR   P +          S  R  RRSRSP +
Sbjct: 480 SKERDHSQLG----------SPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRSPSK 529

Query: 280 RSPVRRRSRSPGRRRHRSRSSSNSSQ 305
               RR+SRSP + R RS+S S S +
Sbjct: 530 ERQ-RRQSRSPNKERDRSQSRSPSEE 554



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 75/291 (25%), Positives = 117/291 (40%), Gaps = 39/291 (13%)

Query: 17  NNKKSSTRAPSPTKRKDRS----DEKSKDRSKDKGATKESSEKDRGRDKTRKR---HSAS 69
           N  +  +R+ SP K +DRS      K++D S+ +   K + ++ R R   + R    S S
Sbjct: 408 NKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYK-ARDRSRSRSPNKARDHSRSRS 466

Query: 70  SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS------SGS 123
              +  RSRS S S     +  GS S       S         R S SSS       S S
Sbjct: 467 PNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRRSRS 526

Query: 124 PSPSRRRHD----NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
           PS  R+R      N+ R RS+S+ P  + + R+ RSPS +  +    R  R+ +K+   E
Sbjct: 527 PSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDR----RRWRSPSKER--E 580

Query: 180 IFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVL 239
              +    +  D    R  P+   GY+     + ++A    +         Q        
Sbjct: 581 RRQSRSSSEERDHSRSR-SPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQS------- 632

Query: 240 APWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSP 290
               R + +   P +  +P  P W RSP R    S++   R+P +  S SP
Sbjct: 633 ----RTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQN---RTPSKTSSHSP 676



 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 87/316 (27%), Positives = 128/316 (40%), Gaps = 31/316 (9%)

Query: 4   SGVKKKSLLGVKENN-KKSSTRAPSPTKRKDRSD--EKSKDRSKDKGATKESSEKDRGRD 60
           SG +K++   V+ ++ K++ +RA S T++   S     S+ RS  KG ++  S   R   
Sbjct: 292 SGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPR--- 348

Query: 61  KTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120
              + H+ S   S  RS S S SSS      GSSS     S  S+SGS +  R  S S S
Sbjct: 349 -RGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSS-PRKESGRSQSGSPNKQRDHSRSRS 406

Query: 121 -------SGSPSPSRRRHDNRRRSRSKSKPPKRDE---KERKR-RSPSPKPTKVHIGRLT 169
                  S S SP + R  +R RS +K++   R     K R R RS SP   + H    +
Sbjct: 407 PNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRS 466

Query: 170 RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQID 229
            N  +D          + +      ER H  L       +        K  +     +  
Sbjct: 467 PNKARD----------RSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKE-RQCRQSRSS 515

Query: 230 GQEITATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRS 289
            +E       +P      R+   P +          S  R  R+SRSP +    RRR RS
Sbjct: 516 SKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERD-RRRWRS 574

Query: 290 PGRRRHRSRSSSNSSQ 305
           P + R R +S S+S +
Sbjct: 575 PSKERERRQSRSSSEE 590



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 73/295 (24%), Positives = 114/295 (38%), Gaps = 32/295 (10%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG---ATKESSEKD-RGRDKTRKRHSASSGS 72
           ++ K  ++  S T R+ RS   S++ SK++    +   S E+D RG    RK    S   
Sbjct: 334 SHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSG 393

Query: 73  SSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRSSSSSSSS-GSPSPSRRR 130
           S  + R  S S S +     S S S   +   SRS S + +R  S S S   +   SR R
Sbjct: 394 SPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSR 453

Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI 190
             N+ R  S+S+ P +     + RSPS +     +G  ++   +DH           +  
Sbjct: 454 SPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKE--RDH-----------RRS 500

Query: 191 DMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRF 250
             P +      S+  +         +    +     +   +E   +   +P      R+ 
Sbjct: 501 RSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQS 560

Query: 251 SPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSQ 305
             P            S  R RRR RSP +    RR+SRS    R  SRS S + Q
Sbjct: 561 RSP------------SKERDRRRWRSPSKERE-RRQSRSSSEERDHSRSRSPNKQ 602



 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 15/145 (10%)

Query: 20  KSSTRAPSPTK--RKDRSDEKSKDRSKDKGATKE-----SSEKDRGRDKTRKRHSASSGS 72
           +S +R+PS  +  R+ RS  K +DR + +  +KE     S      RD +R R S +  S
Sbjct: 545 RSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSR-SPNKQS 603

Query: 73  SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
             +R R+SS   + S + T S  G+ S S +S       S+ S  S S+   SP  +R  
Sbjct: 604 GYSRPRASSKEKAHSRSRTPSKEGNHSQSRTS-------SKESDPSQSTVPRSPDWKRSP 656

Query: 133 NRRRSRSKSKPPKRDEKERKRRSPS 157
            R  S S+++ P +         PS
Sbjct: 657 TRTSSLSQNRTPSKTSSHSPSTFPS 681



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 17  NNKKSSTRAPSPTK----RKDRSDEKSKDRSKDKGATKE---------SSEKDRGR--DK 61
           + ++   R+ SP+K    R+ RS  K +DRS+ +  ++E         S E+DR R    
Sbjct: 516 SKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSP 575

Query: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS------GSSSTSRSS 115
           +++R    S SSS     S + S    +       SS   A SRS      G+ S SR+S
Sbjct: 576 SKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTS 635

Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPT 161
           S  S     +  R     R  +R+ S    R   +    SPS  P+
Sbjct: 636 SKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPS 681



 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 12/284 (4%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSS 81
           ++R  +PT ++  S  KS  R +     +  S+  R   K   R    SG   +   + +
Sbjct: 155 ASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQP-RNLSKKSYRPPGGSGIGRSSELAVT 213

Query: 82  TSSSGSSTSTGSSSGSSS---SSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSR 138
            S++   T TG  S   S   S +SSR   S       S   S SP+    R  +  ++ 
Sbjct: 214 PSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQAS 273

Query: 139 SKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH 198
           ++S+P    +    RRS S    + H    + +  ++H      T   I      + +M 
Sbjct: 274 TRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGI------LSQMG 327

Query: 199 PHL-SKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPRRML 257
            H  S+ ++  + +N     +  +  +  +   +E + +   +       R  S PR+  
Sbjct: 328 RHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKES 387

Query: 258 PPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSS 301
                   +  R   RSRSP +    R RSRSP + R RSRS S
Sbjct: 388 GRSQSGSPNKQRDHSRSRSPNKARD-RSRSRSPYKARDRSRSRS 430



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 70/320 (21%), Positives = 109/320 (34%), Gaps = 55/320 (17%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
           K ++K S + APS +       +        K AT   S        +R    + S S S
Sbjct: 5   KRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSSSKS 64

Query: 75  TRSRSSSTSSSG--SSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
           T+S S+  + S   SS S   S   + S  S+ + +S  S++S         + SR R  
Sbjct: 65  TKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTP 124

Query: 133 NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
            RR SRS  + P R     + R+   +P                        G    +  
Sbjct: 125 GRRGSRSSKRSPSRASTPGRIRTHGARP------------------------GMASRVRT 160

Query: 193 PVERMHPHLSKGYACVEFENPDEAEKALKHMD-------GGQIDGQ--EITATVVLAPWP 243
           P  +      K Y      N + ++   +++        GG   G+  E+  T   A   
Sbjct: 161 PTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQ 220

Query: 244 RPT---------------PRRFSPPRRMLPPPPMWLRSPPRMRRRSR-----SPRRRSPV 283
            PT                R+     +M+ P      SP  M  R +     S R R   
Sbjct: 221 TPTGIPSKEKSDNPSPSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQS 280

Query: 284 RRRSRSPGRRRHRSRSSSNS 303
             +SRSP R R  S+  ++S
Sbjct: 281 HSQSRSPRRSRSGSQKRTHS 300



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 17  NNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH-SASSGSSST 75
           + +K+ +R+ +P+K  + S  ++  +  D   +      D  R  TR    S +   S T
Sbjct: 612 SKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKT 671

Query: 76  RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSS 119
            S S ST  SG  T    S   S + A++   +    RSSSSSS
Sbjct: 672 SSHSPSTFPSGGQTL---SQDDSQADATTSKATLPGERSSSSSS 712



 Score = 37.0 bits (84), Expect = 0.022
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 21  SSTRAPSPTKRKDRSDEKSKD--RSKDKGATKES--SEKDRGRDKTRKRHSASSGSSSTR 76
           S  RA S  K   RS   SK+   S+ + ++KES  S+    R    KR    + S S  
Sbjct: 606 SRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQN 665

Query: 77  SRSSSTSSSGSST--STGSSSGSSSSSASSRSGSSSTSRSSSSSSSS 121
              S TSS   ST  S G +     S A + +  ++     SSSSSS
Sbjct: 666 RTPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKATLPGERSSSSSS 712



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-------EKDRGRDKTRKRHS 67
           +   ++S + +      + RS  K    S+ + ++KE +        K+    ++R    
Sbjct: 578 ERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSK 637

Query: 68  ASSGSSSTRSRSSSTSSSGSSTSTGSSSGS-SSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
            S  S ST  RS     S + TS+ S + + S +S+ S S   S  ++ S   S    + 
Sbjct: 638 ESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQADATT 697

Query: 127 SRRRHDNRRRSRSKSK 142
           S+      R S S SK
Sbjct: 698 SKATLPGERSSSSSSK 713



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 7/104 (6%)

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST-------SRSSSSSSSSGSPSP 126
           S+  RSS  S S + + +   +      AS +S  S+T       ++ ++S +S  SPS 
Sbjct: 2   SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61

Query: 127 SRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTR 170
           S+       +    ++P  R     K R+PS   T     + ++
Sbjct: 62  SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASK 105


>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
          Length = 2426

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 81/290 (27%), Positives = 114/290 (39%), Gaps = 54/290 (18%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRHSASSGSS 73
            S  +P  +   +R+ E S +   D         T E S+K++ RDK    K+  +S  S 
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825

Query: 74   STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            S RS+SS   S   +S S   +   SS S S RS + S SRS     SS S S SR R  
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885

Query: 133  NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
              +  R +S   +   +ERKR+  S +  +  +   +R                      
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRT--------------------- 1924

Query: 193  PVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSP 252
            P  R   H            P    ++       +  G+  + ++  +   R   RR   
Sbjct: 1925 PSRRSRSH-----------TPSRRRRS-------RSVGRRRSFSISPSRRSRTPSRRSRT 1966

Query: 253  PRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGRRRHRSRS 299
            P R    P    R+P    RRSR+P RRS     RRRSRS  RRR  S S
Sbjct: 1967 PSRRSRTPSRRSRTP---SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRH 66
            K  + +S TR+ S ++R+ RS   S+ RSK +G    S EK         + R++ RKR 
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909

Query: 67   SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
            S+     + R+RS + S           S S + S   RS S    RS S S S  S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960

Query: 127  SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
            SRR     RRSR+   +S+ P R  +   RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRHSASS 70
            G KE  + SS R+ S  KR   S+ KS+ R+ +    A K SS+    R +TR R  +  
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
               S+RSRS S      S      S    S +  R    S+SR +  +  + S +PSRR 
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929

Query: 131  HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
              +    RRRSRS             +S+ P R  +   RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS-SGSSS 74
            E +KK+  R     ++K  S  +S+ +       K        R + RKR S S S  S 
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
            TRSRS S     SS S   S G  S S   R    S    S S       S SR   DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915

Query: 135  RRSRSKSKPPKRDEK----ERKRRSPS 157
            +  R++S+ P R  +     R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
            K +    V +  +K S +  S ++ + R    S+D  K  +  ++  S + R    +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938

Query: 66   HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
             S S G    R RS S S S  S +    S + S  + + S  S T    S + S  S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994

Query: 126  PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            PSRRR      RRRS S S    R  +   RR  S  P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
            +K+     ++N K    R+ +P++R        + RS+  G  +  S     R +T  R 
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963

Query: 67   SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            S + S  S T SR S T S  S T +  S  + S    SRS     S S S      S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSR-TPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022

Query: 126  PSRRRHD----NRRRSRS--KSKPPKR 146
            P RRR       R+RSRS  + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 270  MRRRSRSPRRRSPV-----RRRSRSPGRRRHRSRSSSNSSQ 305
            +R RSR+P RRS       RRRSRS GRRR  S S S  S+
Sbjct: 1918 VRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSR 1958



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 271  RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
            +R S+S   RS  R RSRS  RRR  SRS S S
Sbjct: 1849 KRSSKSKSHRSQTRSRSRSR-RRRRSSRSRSKS 1880



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 265  RSPPRMRRR-SRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302
            RS  R RR  S+  R+RSP + RS+S  R+R RS S  N
Sbjct: 1877 RSKSRGRRSVSKEKRKRSP-KHRSKSRERKRKRSSSRDN 1914



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 265  RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSQ 305
            RS  R RRRS   R +S  RR      R RSP      R R R RSSS  ++
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915


>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
          Length = 2303

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 81/290 (27%), Positives = 114/290 (39%), Gaps = 54/290 (18%)

Query: 22   STRAPSPTKRKDRSDEKSKDRSKDKGA------TKESSEKDRGRDK--TRKRHSASSGSS 73
            S  +P  +   +R+ E S +   D         T E S+K++ RDK    K+  +S  S 
Sbjct: 1766 SAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRDSSLRSR 1825

Query: 74   STRSRSSSTSS-SGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHD 132
            S RS+SS   S   +S S   +   SS S S RS + S SRS     SS S S SR R  
Sbjct: 1826 SKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRS 1885

Query: 133  NRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM 192
              +  R +S   +   +ERKR+  S +  +  +   +R                      
Sbjct: 1886 VSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRT--------------------- 1924

Query: 193  PVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSP 252
            P  R   H            P    ++       +  G+  + ++  +   R   RR   
Sbjct: 1925 PSRRSRSH-----------TPSRRRRS-------RSVGRRRSFSISPSRRSRTPSRRSRT 1966

Query: 253  PRRMLPPPPMWLRSPPRMRRRSRSPRRRSPV---RRRSRSPGRRRHRSRS 299
            P R    P    R+P    RRSR+P RRS     RRRSRS  RRR  S S
Sbjct: 1967 PSRRSRTPSRRSRTP---SRRSRTPSRRSRTPSRRRRSRSVVRRRSFSIS 2013



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 52/155 (33%), Positives = 74/155 (47%), Gaps = 23/155 (14%)

Query: 15   KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEK--------DRGRDKTRKRH 66
            K  + +S TR+ S ++R+ RS   S+ RSK +G    S EK         + R++ RKR 
Sbjct: 1853 KSKSHRSQTRSRSRSRRRRRS---SRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRS 1909

Query: 67   SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
            S+     + R+RS + S           S S + S   RS S    RS S S S  S +P
Sbjct: 1910 SSRDNRKTVRARSRTPSRR---------SRSHTPSRRRRSRSVGRRRSFSISPSRRSRTP 1960

Query: 127  SRRRHDNRRRSRS---KSKPPKRDEKERKRRSPSP 158
            SRR     RRSR+   +S+ P R  +   RRS +P
Sbjct: 1961 SRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1995



 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 52/165 (31%), Positives = 73/165 (44%), Gaps = 21/165 (12%)

Query: 13   GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKG--ATKESSEKDRGRDKTRKRHSASS 70
            G KE  + SS R+ S  KR   S+ KS+ R+ +    A K SS+    R +TR R  +  
Sbjct: 1812 GEKEKKRDSSLRSRS--KRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRR 1869

Query: 71   GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
               S+RSRS S      S      S    S +  R    S+SR +  +  + S +PSRR 
Sbjct: 1870 RRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRS 1929

Query: 131  HDN----RRRSRS-------------KSKPPKRDEKERKRRSPSP 158
              +    RRRSRS             +S+ P R  +   RRS +P
Sbjct: 1930 RSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTP 1974



 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 48/147 (32%), Positives = 62/147 (42%), Gaps = 10/147 (6%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS-SGSSS 74
            E +KK+  R     ++K  S  +S+ +       K        R + RKR S S S  S 
Sbjct: 1801 EKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860

Query: 75   TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
            TRSRS S     SS S   S G  S S   R    S    S S       S SR   DNR
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKR--KRSPKHRSKSRERKRKRSSSR---DNR 1915

Query: 135  RRSRSKSKPPKRDEK----ERKRRSPS 157
            +  R++S+ P R  +     R+RRS S
Sbjct: 1916 KTVRARSRTPSRRSRSHTPSRRRRSRS 1942



 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKD-KGATKESSEKDRGRDKTRKR 65
            K +    V +  +K S +  S ++ + R    S+D  K  +  ++  S + R    +R+R
Sbjct: 1879 KSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938

Query: 66   HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
             S S G    R RS S S S  S +    S + S  + + S  S T    S + S  S +
Sbjct: 1939 RSRSVG----RRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRSRT 1994

Query: 126  PSRRRHDN---RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            PSRRR      RRRS S S    R  +   RR  S  P +
Sbjct: 1995 PSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIR 2034



 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 8/147 (5%)

Query: 7    KKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRH 66
            +K+     ++N K    R+ +P++R        + RS+  G  +  S     R +T  R 
Sbjct: 1904 RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRR 1963

Query: 67   SAS-SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
            S + S  S T SR S T S  S T +  S  + S    SRS     S S S      S +
Sbjct: 1964 SRTPSRRSRTPSRRSRTPSRRSRTPSRRSR-TPSRRRRSRSVVRRRSFSISPVRLRRSRT 2022

Query: 126  PSRRRHD----NRRRSRS--KSKPPKR 146
            P RRR       R+RSRS  + + PKR
Sbjct: 2023 PLRRRFSRSPIRRKRSRSSERGRSPKR 2049



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 270  MRRRSRSPRRRSPV-----RRRSRSPGRRRHRSRSSSNSSQ 305
            +R RSR+P RRS       RRRSRS GRRR  S S S  S+
Sbjct: 1918 VRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSR 1958



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 271  RRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
            +R S+S   RS  R RSRS  RRR  SRS S S
Sbjct: 1849 KRSSKSKSHRSQTRSRSRSR-RRRRSSRSRSKS 1880



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 265  RSPPRMRRR-SRSPRRRSPVRRRSRSPGRRRHRSRSSSN 302
            RS  R RR  S+  R+RSP + RS+S  R+R RS S  N
Sbjct: 1877 RSKSRGRRSVSKEKRKRSP-KHRSKSRERKRKRSSSRDN 1914



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 11/52 (21%)

Query: 265  RSPPRMRRRSRSPRRRSPVRR------RSRSP-----GRRRHRSRSSSNSSQ 305
            RS  R RRRS   R +S  RR      R RSP      R R R RSSS  ++
Sbjct: 1864 RSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNR 1915


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 71/238 (29%), Positives = 105/238 (44%), Gaps = 26/238 (10%)

Query: 22  STRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKD----------RGRDKTRK-RHSASS 70
           ++R+ SP  R D  D + + R++++        +D          RGR   R  +HS S 
Sbjct: 185 ASRSRSPN-RFDAHDPRYEPRAREQFTLPSVVHRDIYRDDITREVRGRRPERNYQHSRSR 243

Query: 71  GSSSTRSRSSSTSSSGSSTS------TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGS- 123
              S++SR+ S     S  S      +GS S S SSS+ S S SSSTS  SS SSSS S 
Sbjct: 244 SPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSD 303

Query: 124 PSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIFST 183
            SP+ R   +       S+     EK+  R+S   K   + + R T    KD +   F  
Sbjct: 304 DSPA-RSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPV-RSTDTSLKDGLFHEFKK 361

Query: 184 YGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEITATVVLAP 241
           +GK+  +     ++H    + Y  V F   ++ EKAL    G    G +I  T  + P
Sbjct: 362 FGKVTSV-----QIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGP 414



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 14/116 (12%)

Query: 50  KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSS 109
           +E S + R R++ R+R  +       R R    S S        S G+S S A      S
Sbjct: 693 REYSYRQRERERERERFESDRDRDHER-RPIERSQSPVHLRRPQSPGASPSQAERLPSDS 751

Query: 110 ST---SRSSSSSSSSGSPSPSR----------RRHDNRRRSRSKSKPPKRDEKERK 152
                SRSS  S S  S SP R          R   N +  + ++  P+R E+ER+
Sbjct: 752 ERRLYSRSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERR 807



 Score = 35.0 bits (79), Expect = 0.083
 Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 17/134 (12%)

Query: 42  RSKDKGATKESSEKDRGRDKTRK------------RHSASSGSSSTRSRSSSTSSSGSST 89
           R +++   +E  E DR RD  R+            R  +   S S   R  S S     +
Sbjct: 698 RQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQAERLPSDSERRLYS 757

Query: 90  STGSSSGSSSSSASSRSGSSSTSR-----SSSSSSSSGSPSPSRRRHDNRRRSRSKSKPP 144
            +   SGS SS +  R      SR      +  +    +  P R   + R   + K +  
Sbjct: 758 RSSDRSGSCSSLSPPRYEKLDKSRLERYTKNEKTDKERTFDPERVERERRLIRKEKVEKD 817

Query: 145 KRDEKERKRRSPSP 158
           K D+++RK +  SP
Sbjct: 818 KTDKQKRKGKVHSP 831



 Score = 33.9 bits (76), Expect = 0.18
 Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 64/270 (23%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSS 74
           + N + S +R+P  ++ +++S ++   ++  +     S    R R  +    S+SS +SS
Sbjct: 234 ERNYQHSRSRSPHSSQSRNQSPQRLASQAS-RPTRSPSGSGSRSRSSSSDSISSSSSTSS 292

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS--------------RSSSSSSS 120
             S SSS+SS  S   +  S+   + ++   S                    RS+ +S  
Sbjct: 293 DSSDSSSSSSDDSPARSVQSAAVPAPTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLK 352

Query: 121 SG-----------------SPSPSR------RRHDNRRRSRSKSK--------------- 142
            G                   S  R      R+ +++ ++ + SK               
Sbjct: 353 DGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWI 412

Query: 143 -PPKRDEKERKRRSPS-----PKPTK-VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVE 195
            P    E E +          PK T+ + IG L +  T   +  IF  +G+I  ID+   
Sbjct: 413 GPETESENEFRPLDERIDEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKV 472

Query: 196 RMHPHLSKGYACVEFENPDEAEKALKHMDG 225
              P     YA +++ +     KA+K MDG
Sbjct: 473 NGVPQ----YAFLQYCDIASVCKAIKKMDG 498



 Score = 32.7 bits (73), Expect = 0.41
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 21/161 (13%)

Query: 19   KKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKT----------RKRHSA 68
            +  +T    P      S  + K   ++ G+ ++   KD G DK            K+ + 
Sbjct: 2010 RPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTDKNPPETAPVEVVEKKPAP 2069

Query: 69   SSGSSSTRSRS--SSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126
               S S R RS  S  +   S++     +  S   A++++G   +   + S   S SP  
Sbjct: 2070 EKNSKSKRGRSRNSRLAVDKSASLKNVDAAVSPRGAAAQAGERESGVVAVSPEKSESP-- 2127

Query: 127  SRRRHDNRRRSRSKSKPPKRDEKERKR----RSPSPKPTKV 163
               + ++   S+ KS P   D++  K       PSP+ T++
Sbjct: 2128 ---QKEDGLSSQLKSDPVDPDKEPEKEDVSASGPSPEATQL 2165



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 265 RSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSSNSS 304
           RSP   + R++SP+R  S   R +RSP     RSRSSS+ S
Sbjct: 243 RSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDS 283



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 15/148 (10%)

Query: 21   SSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSS 80
            ++ R   P K + R+DE+ ++ +K+   T +  E   G    R + +A+ G         
Sbjct: 1946 TTPRRGRPPKTRRRADEEEENEAKEPAETLKPPE---GWRSPRSQKTAAGG--------- 1993

Query: 81   STSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSK 140
                 G          ++   A++  G     + SS    +        +  +R+ + + 
Sbjct: 1994 --GPQGKKGKNEPKVDATRPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRDRKDAGTD 2051

Query: 141  SKPPKRDEKERKRRSPSP-KPTKVHIGR 167
              PP+    E   + P+P K +K   GR
Sbjct: 2052 KNPPETAPVEVVEKKPAPEKNSKSKRGR 2079


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 17/161 (10%)

Query: 5    GVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRK 64
            G  +KS     E  + S   +    +  D  DE+ +DR +    TK+ +E   G D+   
Sbjct: 953  GKHRKSFALDSEGEEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEE-- 1010

Query: 65   RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSP 124
                   S S+   S    S G + ST  S  SSSSS+SS   SSS+S SSSSSSSS   
Sbjct: 1011 -------SDSSSKCSLYADSDGENDSTSDSESSSSSSSSS---SSSSSSSSSSSSSSSES 1060

Query: 125  SPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHI 165
            S      + R  +   + PP R+        P+P P +V +
Sbjct: 1061 SSEDEEEEERPAALPSASPPPREVP-----VPTPAPVEVPV 1096



 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 50/185 (27%), Positives = 74/185 (40%), Gaps = 30/185 (16%)

Query: 6    VKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKR 65
            VK+K    + E +++   R  +P +  +   E+ K+  +      +  ++D  R KT+ +
Sbjct: 895  VKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGK 954

Query: 66   H-----------SASSGSSS--------------TRSRSSSTSSSGSSTSTGSSSGSSSS 100
            H            AS  SSS               R  +  T+   +  S G    S SS
Sbjct: 955  HRKSFALDSEGEEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEESDSS 1014

Query: 101  S-----ASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
            S     A S   + STS S SSSSSS S S S     +   S S+S     +E+ER    
Sbjct: 1015 SKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAAL 1074

Query: 156  PSPKP 160
            PS  P
Sbjct: 1075 PSASP 1079



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 39  SKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSS 98
           S+D +     T  S +  R  +  +   S    S+S+ S ++ST+ + ++ +T SSS SS
Sbjct: 282 SQDSAYSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASS 341

Query: 99  SSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSP 158
           SS +SS S SSS+S S   SS +  P+         R  R  S PP+R  +E    +P  
Sbjct: 342 SSLSSSSSSSSSSSSSQFRSSDANYPA---YYESWNRYQRHTSYPPRRATREEPPGAPFA 398

Query: 159 KPT 161
           + T
Sbjct: 399 ENT 401



 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 16   ENNKKSSTRAPSPTKRKDRSDEKSKDRSK-----------DKGATKESSEKDRGRDKTRK 64
            E  K++       TK   R +E+ K + K           ++ + + SSEKD   D+  +
Sbjct: 926  EQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQESSSEKDEEDDEEDE 985

Query: 65   RHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGS---SSSSASSRSGSSSTSRSSSSSSSS 121
                   +  T  + +  S      S  SS  S    S   +  +  S +S SSSSSSSS
Sbjct: 986  EDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSS 1045

Query: 122  GSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHI 165
             S S S     +   S S S+  + +E+     S SP P +V +
Sbjct: 1046 SSSSSS---SSSSSSSESSSEDEEEEERPAALPSASPPPREVPV 1086



 Score = 35.4 bits (80), Expect = 0.063
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 66  HSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR-SGSSSTSRSSSSSSS--SG 122
           +S+S+ S+S + R S  S   + +    S+ S+S++AS+  + +++ + SSS+SSS  S 
Sbjct: 287 YSSSTTSTSFKPRRSENSYQDAFSRRHFSASSASTTASTAIAATTAATASSSASSSSLSS 346

Query: 123 SPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
           S S S     ++ RS   + P   +   R +R  S  P +
Sbjct: 347 SSSSSSSSSSSQFRSSDANYPAYYESWNRYQRHTSYPPRR 386



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 50  KESSEKDRGRDK-TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
           K  SEK +G    T    S    SS T +  + T++ G+    G+     +S +SSR  +
Sbjct: 198 KALSEKFQGSGAATETAESRRRSSSDTAAYPAGTTAVGTP-GNGTPCSQDTSFSSSRQDT 256

Query: 109 SSTSRSSSSSSSSGSPSPSR 128
            S+    +  SS G+P  SR
Sbjct: 257 PSSFGQFTPQSSQGTPYTSR 276


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 85/301 (28%), Positives = 116/301 (38%), Gaps = 33/301 (10%)

Query: 15  KENNKKSSTRAPSPTKRKD---RSDEKSKDRSKDKGATKESSEK-DRGRDKTRKRHSASS 70
           + ++ +SS+R+ S ++R     RS   ++ RS+    ++  S +  R R + R RHS   
Sbjct: 388 RTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGR-RHSGGG 446

Query: 71  GSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRR 130
                R   S     G      S S S S     R G      SSS S SS S SPSR R
Sbjct: 447 SRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSR 506

Query: 131 HDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTKDHIMEIF--------S 182
              R RS S S    R     + +SPSP P +    +LTR      + E           
Sbjct: 507 SLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAR---EKLTRPAASPAVGEKLKKTEPAAGK 563

Query: 183 TYGKIKMIDMPVERMHPHLSKGYACVEFENPDEA--EKALKHMDGGQIDGQEITATVVLA 240
             G  K    P E++   + K     +F+   +A  EK ++     Q    E+ A     
Sbjct: 564 ETGAAKPKLTPQEKLKLRMQKALN-RQFKADKKAAQEKMIQQEHERQEREDELRAMA--- 619

Query: 241 PWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSS 300
                   R     R       W R   +  R+SRSP   SP   R  S  RRR RSRS 
Sbjct: 620 -----RKIRMKERERREKEREEWER---QYSRQSRSP---SPRYSREYSSSRRRSRSRSR 668

Query: 301 S 301
           S
Sbjct: 669 S 669



 Score = 51.6 bits (122), Expect = 9e-07
 Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 30/169 (17%)

Query: 16  ENNKKSSTRAPSPTKRKDR----------SDEKSKDRSKDKGATKESSEKDR-------- 57
           E++ +S +R+ SPT  ++           SDE++   +    A+  ++ K          
Sbjct: 306 ESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGP 365

Query: 58  --GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGS---SSSSASSRSGSSSTS 112
             GR+ + +R S+SS SSS+ SR+SS+ SS  S+S     G    S   A SRS S S S
Sbjct: 366 APGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRS 425

Query: 113 RSS----SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
           RS     S S S G         D  R SRS   P +R     +RRS S
Sbjct: 426 RSRSRRYSRSRSRGRRHSGGGSRDGHRYSRS---PARRGGYGPRRRSRS 471



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 7   KKKSLLGVKENNKKSSTRAPSPTK---RKDRSDEKSKDRSKDKGATKESSEKDR------ 57
           ++K L G ++ +  S  R  SPT    ++  S+  S+ RS+ +  T    EK        
Sbjct: 275 REKRLRG-RKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFG 333

Query: 58  GRDKTRKRHSASSGSS--STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSS 115
           G D+     +A++ +S  +T    +     G +    +S+   SSS+SS S +S TS S 
Sbjct: 334 GSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSR 393

Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRN 171
           SSS SS         + + R +RS+S+   R     +R S S    + H G  +R+
Sbjct: 394 SSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRD 449



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 75/299 (25%), Positives = 113/299 (37%), Gaps = 50/299 (16%)

Query: 13  GVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK----GATKESSEKDRGR-------DK 61
           G   + + + +R+ S ++ + RS   S+ RS+ +    G +++     R          +
Sbjct: 407 GYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPR 466

Query: 62  TRKRHSASSGSSSTRS----RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
            R R  + SG    R     R  S+S S SS S   S   S + + S S S S SRS S 
Sbjct: 467 RRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSR 526

Query: 118 S-SSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK-- 174
           S S S SPSP+R +      S +  +  K+ E    + + + KP      +L   + K  
Sbjct: 527 SRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKAL 586

Query: 175 DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENPDEAEKALKHMDGGQIDGQEIT 234
           +   +      + KMI    ER              E  DE     + +   + + +E  
Sbjct: 587 NRQFKADKKAAQEKMIQQEHERQ-------------EREDELRAMARKIRMKERERREKE 633

Query: 235 ATVVLAPWPRPTPRRFSPPRRMLPPPPMWLRSPPRMRRRSRSPRRRSPVRRRSRSPGRR 293
                  W R   R+   P              PR  R   S RRRS  R RSRSP  R
Sbjct: 634 R----EEWERQYSRQSRSP-------------SPRYSREYSSSRRRS--RSRSRSPHYR 673


>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
           sapiens]
          Length = 434

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 61/175 (34%), Positives = 77/175 (44%), Gaps = 20/175 (11%)

Query: 2   DLSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKS-KDRSKDKGATK-ESSEKDRGR 59
           D  G K +S    KE  +  S    S   +K +S+E + K+ S DKG  +  SSE    R
Sbjct: 55  DNEGRKHRSRSRSKEGRRHESKDKSS---KKHKSEEHNDKEHSSDKGRERLNSSENGEDR 111

Query: 60  DKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS----SSTSRSS 115
            K RK   +S G S +RSRS        S     S   S     SRS S     S SRS 
Sbjct: 112 HK-RKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170

Query: 116 SSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER----------KRRSPSPKP 160
                  S S SR RH +R RSRS+++   RD K+R            R+PSP P
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPP 225



 Score = 58.2 bits (139), Expect = 9e-09
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 3/158 (1%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDK-GATKESSEKDRGRDKTRKRHSASSGSS 73
           K +  +S +R+    ++ D    K + RS+ K G   ES +K   + K+ + +     S 
Sbjct: 37  KHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSD 96

Query: 74  STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDN 133
             R R +S S +G          SS   + SRS S      S S     S S SR R  +
Sbjct: 97  KGRERLNS-SENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKS 155

Query: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRN 171
           R RSR + K   R  +ERKRR  S   ++      TR+
Sbjct: 156 RSRSRERKKSRSR-SRERKRRIRSRSRSRSRHRHRTRS 192



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 47/169 (27%), Positives = 73/169 (43%), Gaps = 11/169 (6%)

Query: 15  KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSS- 73
           K +N+    R+ S +K   R +  SKD+S  K  ++E ++K+   DK R+R ++S     
Sbjct: 53  KSDNEGRKHRSRSRSKEGRRHE--SKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGED 110

Query: 74  --------STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125
                   S+R RS S S S        S     S + SR    S SRS     S     
Sbjct: 111 RHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 170

Query: 126 PSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPKPTKVHIGRLTRNVTK 174
             +RR  +R RSRS+ +   R     + RS   K       R +R++++
Sbjct: 171 ERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSR 219



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 7/151 (4%)

Query: 15  KENNKKSSTRAPSPTKRK---DRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSG 71
           ++  K+ S  + SP   K    RS  +S++R K K   +    + R R K  +RH  S  
Sbjct: 20  RDKKKEQSEVSVSPRASKHHYSRSRSRSRER-KRKSDNEGRKHRSRSRSKEGRRHE-SKD 77

Query: 72  SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRH 131
            SS + +S   +    S+  G    +SS +   R       R SS   S        RRH
Sbjct: 78  KSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRH--KRKERKSSRGRSHSRSRSRERRH 135

Query: 132 DNRRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
            +R R R KS+   R+ K+ + RS   K ++
Sbjct: 136 RSRSRERKKSRSRSRERKKSRSRSRERKKSR 166



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 17/149 (11%)

Query: 25  APSPTKRKDRSDEK-SKDRSKDKG---------ATKESSEKDRGRDKTRKRHSASSGSSS 74
           A S T+R   + EK S DR K K          A+K    + R R + RKR S + G   
Sbjct: 2   AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61

Query: 75  TRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRR-RHDN 133
            RSRS S       +   SS    S   + +  SS   R   +SS +G     R+ R  +
Sbjct: 62  -RSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSS 120

Query: 134 RRRSRSKSKPPKRDEKERKRRSPSPKPTK 162
           R RS S+S+      +ER+ RS S +  K
Sbjct: 121 RGRSHSRSR-----SRERRHRSRSRERKK 144



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 22/211 (10%)

Query: 99  SSSASSRSG----SSSTSRSSSSSSSSGSPSP-SRRRHDNRRRSRSKSKPPKRDEKERKR 153
           ++S + R G     +S  R      S  S SP + + H +R RSRS+ +  K D + RK 
Sbjct: 2   AASDTERDGLAPEKTSPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKH 61

Query: 154 RSPSPKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYACVEFENP 213
           RS S        GR  R+ +KD          K        E      S         + 
Sbjct: 62  RSRSRSKE----GR--RHESKD----------KSSKKHKSEEHNDKEHSSDKGRERLNSS 105

Query: 214 DEAEKALKHMDGGQIDGQEITATVVLAPWPRPTPRRFSPPR-RMLPPPPMWLRSPPRMRR 272
           +  E   K  +     G+  + +       R   R     R R         RS  R + 
Sbjct: 106 ENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKS 165

Query: 273 RSRSPRRRSPVRRRSRSPGRRRHRSRSSSNS 303
           RSRS  R+  +R RSRS  R RHR+RS S +
Sbjct: 166 RSRSRERKRRIRSRSRSRSRHRHRTRSRSRT 196



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/35 (60%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 265 RSPPRMRR-RSRSPRRRSPVRRRSRSPGRRRHRSR 298
           RS  R RR RSRS R RS  R R+RS  R R RSR
Sbjct: 168 RSRERKRRIRSRS-RSRSRHRHRTRSRSRTRSRSR 201


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.119    0.330 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,731,692
Number of Sequences: 37866
Number of extensions: 833350
Number of successful extensions: 41571
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 1113
Number of HSP's that attempted gapping in prelim test: 11367
Number of HSP's gapped (non-prelim): 16312
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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