Guide to the Human Genome
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Name: ZNF562 Sequence: fasta or formatted (426aa) NCBI GI: 194097458
Description:

zinc finger protein 562 isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [426aa] zinc finger protein 562 isoform a
alt prot [354aa] zinc finger protein 562 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         16           1
 C cysteine            5.4         23           1
 D aspartate           2.3         10           2
 E glutamate           8.2         35           2
 F phenylalanine       6.6         28           3
 G glycine             7.5         32           2
 H histidine           5.6         24           1
 I isoleucine          4.5         19           1
 K lysine              8.9         38           2
 L leucine             5.4         23           2
 M methionine          1.9          8           1
 N asparagine          4.0         17           1
 P proline             2.8         12           1
 Q glutamine           4.9         21           2
 R arginine            4.5         19           2
 S serine              8.2         35           3
 T threonine           8.5         36           2
 V valine              3.5         15           1
 W tryptophan          0.7          3           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 562 isoform a 
ZNF562                1.000   zinc finger protein 562 isoform a 
ZNF561                0.828   zinc finger protein 561 
ZNF562                0.814   zinc finger protein 562 isoform b 
ZNF812                0.627   PREDICTED: zinc finger protein 812 
ZNF812                0.627   PREDICTED: zinc finger protein 812 
ZNF812                0.627   PREDICTED: zinc finger protein 812 
ZNF426                0.443   zinc finger protein 426 
ZNF778                0.406   zinc finger protein 778 
ZNF266                0.366   zinc finger protein 266 
ZNF266                0.366   zinc finger protein 266 
ZNF420                0.362   zinc finger protein 420 
ZNF699                0.349   zinc finger protein 699 
ZNF846                0.344   zinc finger protein 846 
ZNF559                0.343   zinc finger protein 559 
ZNF283                0.336   zinc finger protein 283 
ZNF14                 0.334   zinc finger protein 14 
ZNF490                0.334   zinc finger protein 490 
ZNF383                0.332   zinc finger protein 383 
ZNF708                0.331   zinc finger protein 708 
ZNF253                0.327   zinc finger protein 253 
ZNF436                0.325   zinc finger protein 436 
ZNF436                0.325   zinc finger protein 436 
ZNF3                  0.325   zinc finger protein 3 isoform 2 
ZNF791                0.322   zinc finger protein 791 
ZNF560                0.322   zinc finger protein 560 
ZNF433                0.319   zinc finger protein 433 
ZNF665                0.319   zinc finger protein 665 
ZNF678                0.319   zinc finger protein 678 
ZNF98                 0.319   zinc finger protein 98 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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