Guide to the Human Genome
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Name: ZNF562 Sequence: fasta or formatted (354aa) NCBI GI: 194097464
Description:

zinc finger protein 562 isoform b

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [426aa] zinc finger protein 562 isoform a
alt prot [426aa] zinc finger protein 562 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         13           1
 C cysteine            6.2         22           1
 D aspartate           1.1          4           1
 E glutamate           7.6         27           1
 F phenylalanine       6.5         23           3
 G glycine             8.5         30           2
 H histidine           6.5         23           1
 I isoleucine          4.8         17           1
 K lysine              9.9         35           2
 L leucine             5.1         18           1
 M methionine          1.4          5           1
 N asparagine          4.0         14           1
 P proline             2.3          8           1
 Q glutamine           5.4         19           2
 R arginine            4.5         16           2
 S serine              8.8         31           3
 T threonine           8.5         30           2
 V valine              2.5          9           1
 W tryptophan          0.6          2           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 562 isoform b 
ZNF562                0.978   zinc finger protein 562 isoform a 
ZNF562                0.978   zinc finger protein 562 isoform a 
ZNF561                0.825   zinc finger protein 561 
ZNF812                0.754   PREDICTED: zinc finger protein 812 
ZNF812                0.754   PREDICTED: zinc finger protein 812 
ZNF812                0.754   PREDICTED: zinc finger protein 812 
ZNF266                0.436   zinc finger protein 266 
ZNF266                0.436   zinc finger protein 266 
ZNF426                0.419   zinc finger protein 426 
ZNF420                0.391   zinc finger protein 420 
ZNF778                0.391   zinc finger protein 778 
ZNF699                0.384   zinc finger protein 699 
ZNF665                0.384   zinc finger protein 665 
ZNF678                0.384   zinc finger protein 678 
ZNF595                0.384   zinc finger protein 595 
ZNF93                 0.383   zinc finger protein 93 
ZNF846                0.383   zinc finger protein 846 
ZNF85                 0.378   zinc finger protein 85 
ZNF429                0.377   zinc finger protein 429 
ZNF383                0.376   zinc finger protein 383 
ZNF845                0.374   zinc finger protein 845 
ZNF98                 0.373   zinc finger protein 98 
ZNF708                0.373   zinc finger protein 708 
ZNF66                 0.372   PREDICTED: zinc finger protein 66 
ZNF66                 0.372   PREDICTED: zinc finger protein 66 
ZNF66                 0.372   PREDICTED: zinc finger protein 66 
ZNF431                0.372   zinc finger protein 431 
ZNF347                0.372   zinc finger protein 347 
ZNF184                0.370   zinc finger protein 184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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