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Search of human proteins with 193804923
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|193804923 hypothetical protein LOC55086 [Homo sapiens]
(855 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|193804923 hypothetical protein LOC55086 [Homo sapiens] 1750 0.0
gi|118498356 kinectin 1 isoform a [Homo sapiens] 34 0.66
gi|118498368 kinectin 1 isoform c [Homo sapiens] 34 0.66
gi|33620775 kinectin 1 isoform a [Homo sapiens] 34 0.66
gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens] 33 0.86
gi|118498362 kinectin 1 isoform b [Homo sapiens] 33 1.1
gi|118402582 cell division cycle 20 [Homo sapiens] 32 2.5
gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens] 32 2.5
gi|223468617 family with sequence similarity 75, member C1 [Homo... 32 3.3
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 32 3.3
gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo s... 32 3.3
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 31 4.3
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 31 4.3
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 31 5.6
gi|79749430 FRAS1-related extracellular matrix protein 2 precurs... 31 5.6
gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo ... 30 9.5
gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo ... 30 9.5
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 30 9.5
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 30 9.5
>gi|193804923 hypothetical protein LOC55086 [Homo sapiens]
Length = 855
Score = 1750 bits (4533), Expect = 0.0
Identities = 855/855 (100%), Positives = 855/855 (100%)
Query: 1 MSGESGQPEAGPSHAGLDWPNPERNRAGVPGGVIRRAGSQGPRSWIQKVLEQIMDSPRQC 60
MSGESGQPEAGPSHAGLDWPNPERNRAGVPGGVIRRAGSQGPRSWIQKVLEQIMDSPRQC
Sbjct: 1 MSGESGQPEAGPSHAGLDWPNPERNRAGVPGGVIRRAGSQGPRSWIQKVLEQIMDSPRQC 60
Query: 61 VTPSEVVPVTVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDGVYQEKCYLDPSLNSLVYQ 120
VTPSEVVPVTVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDGVYQEKCYLDPSLNSLVYQ
Sbjct: 61 VTPSEVVPVTVLAVQRYLLEDEPRDTVPKPPLYCYDVTISDGVYQEKCYLDPSLNSLVYQ 120
Query: 121 NILKVGIQMRISRVSCLYNEKRIGQGILCIDNVHCGETSDSISLETPFRNRAHQEKPERP 180
NILKVGIQMRISRVSCLYNEKRIGQGILCIDNVHCGETSDSISLETPFRNRAHQEKPERP
Sbjct: 121 NILKVGIQMRISRVSCLYNEKRIGQGILCIDNVHCGETSDSISLETPFRNRAHQEKPERP 180
Query: 181 LRGGKSHYLALWNNEDPYGDIWLTDKQPEEHNFSDTKIISLSHLEMTWTNRRNFPALLVR 240
LRGGKSHYLALWNNEDPYGDIWLTDKQPEEHNFSDTKIISLSHLEMTWTNRRNFPALLVR
Sbjct: 181 LRGGKSHYLALWNNEDPYGDIWLTDKQPEEHNFSDTKIISLSHLEMTWTNRRNFPALLVR 240
Query: 241 ILHKSKLRYYGKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVGLVLLLQD 300
ILHKSKLRYYGKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVGLVLLLQD
Sbjct: 241 ILHKSKLRYYGKPDKKMIEPYQTFLEVADSSGTVSVIMWNALCPEWYKSLRVGLVLLLQD 300
Query: 301 YSVKKSYPFRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWRLPKLNHRF 360
YSVKKSYPFRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWRLPKLNHRF
Sbjct: 301 YSVKKSYPFRIQPVPVDPQIKLISTMEICLNLRDPPTNIIIIPEKQVKPEWRLPKLNHRF 360
Query: 361 TTRSELDDMPENCICDVIGLLVFVGRVQRSKKKENREDFWSYRWIHIADGTSEQPFIVEL 420
TTRSELDDMPENCICDVIGLLVFVGRVQRSKKKENREDFWSYRWIHIADGTSEQPFIVEL
Sbjct: 361 TTRSELDDMPENCICDVIGLLVFVGRVQRSKKKENREDFWSYRWIHIADGTSEQPFIVEL 420
Query: 421 FSTSQPEIFENIYPMAYFVCTQLKVVRNDNQVPKLLYLTTTNESGVFITGHRGQPYTYDA 480
FSTSQPEIFENIYPMAYFVCTQLKVVRNDNQVPKLLYLTTTNESGVFITGHRGQPYTYDA
Sbjct: 421 FSTSQPEIFENIYPMAYFVCTQLKVVRNDNQVPKLLYLTTTNESGVFITGHRGQPYTYDA 480
Query: 481 KVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKEIE 540
KVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKEIE
Sbjct: 481 KVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKEIE 540
Query: 541 DLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKR 600
DLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKR
Sbjct: 541 DLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKR 600
Query: 601 HQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPSIFNR 660
HQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPSIFNR
Sbjct: 601 HQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPSIFNR 660
Query: 661 RANINANLQGKARKTISDRWESQLWREKKFGLIDHLHYSRVYPESIPRKFMFEHRKFLSD 720
RANINANLQGKARKTISDRWESQLWREKKFGLIDHLHYSRVYPESIPRKFMFEHRKFLSD
Sbjct: 661 RANINANLQGKARKTISDRWESQLWREKKFGLIDHLHYSRVYPESIPRKFMFEHRKFLSD 720
Query: 721 QYNSQPAKYVPPEGRPPKLDDFKSARSLGHFEVTILGLNHEIAIDVAFLPMYCPEDIRTS 780
QYNSQPAKYVPPEGRPPKLDDFKSARSLGHFEVTILGLNHEIAIDVAFLPMYCPEDIRTS
Sbjct: 721 QYNSQPAKYVPPEGRPPKLDDFKSARSLGHFEVTILGLNHEIAIDVAFLPMYCPEDIRTS 780
Query: 781 QIDTLLTSMNYSCAYPQDTTGNDRLPGPRAVAGDIIKAATELDRVHIVGILDICNLGNNK 840
QIDTLLTSMNYSCAYPQDTTGNDRLPGPRAVAGDIIKAATELDRVHIVGILDICNLGNNK
Sbjct: 781 QIDTLLTSMNYSCAYPQDTTGNDRLPGPRAVAGDIIKAATELDRVHIVGILDICNLGNNK 840
Query: 841 VEVYLHKIYSPENTS 855
VEVYLHKIYSPENTS
Sbjct: 841 VEVYLHKIYSPENTS 855
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 33.9 bits (76), Expect = 0.66
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 524 KVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHS-----SATESASASETLR 578
++ ++ T S + KE++DL+ ++ +++ ++ +K + H + E +E L+
Sbjct: 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLK 823
Query: 579 NANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQ 629
AN+ T Q + EI+ +E N Q + LS+++K++ LQ
Sbjct: 824 VANKEKTVQDLKQEIKALK------EEIGNVQL--EKAQQLSITSKVQELQ 866
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 33.9 bits (76), Expect = 0.66
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 524 KVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHS-----SATESASASETLR 578
++ ++ T S + KE++DL+ ++ +++ ++ +K + H + E +E L+
Sbjct: 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLK 823
Query: 579 NANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQ 629
AN+ T Q + EI+ +E N Q + LS+++K++ LQ
Sbjct: 824 VANKEKTVQDLKQEIKALK------EEIGNVQL--EKAQQLSITSKVQELQ 866
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 33.9 bits (76), Expect = 0.66
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 524 KVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHS-----SATESASASETLR 578
++ ++ T S + KE++DL+ ++ +++ ++ +K + H + E +E L+
Sbjct: 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLK 823
Query: 579 NANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQ 629
AN+ T Q + EI+ +E N Q + LS+++K++ LQ
Sbjct: 824 VANKEKTVQDLKQEIKALK------EEIGNVQL--EKAQQLSITSKVQELQ 866
>gi|148886668 zinc finger CCCH-type containing 12C [Homo sapiens]
Length = 883
Score = 33.5 bits (75), Expect = 0.86
Identities = 17/104 (16%), Positives = 43/104 (41%)
Query: 553 QGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYF 612
+ + ++ + ++A ++A+ +++ + P +++A +R + Q D + +Q +
Sbjct: 441 RSVADELRAMSRNTAAKTANEGGLVKSNSVPCSTKADSTSDVKRGAPKRQSDPSIRTQVY 500
Query: 613 QTTSTNLSLSNKIRILQGPHANPVAVPQPGASVQTKGIKPGMPS 656
Q L NK+ P + T + G+PS
Sbjct: 501 QDLEEKLPTKNKLETRSVPSLVSIPATSTAKPQSTTSLSNGLPS 544
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 33.1 bits (74), Expect = 1.1
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 524 KVESLLTAISEVRKEIEDLQYREQKRIAIQGIITAIKYIPHS-----SATESASASETLR 578
++ ++ T S + KE++DL+ ++ +++ ++ +K + H + E +E L+
Sbjct: 764 ELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLK 823
Query: 579 NANRPSTSQ-AARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIRILQ 629
AN+ T Q + ++QE +E +N+ L+N + LQ
Sbjct: 824 VANKEKTVQLSITSKVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 875
>gi|118402582 cell division cycle 20 [Homo sapiens]
Length = 499
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 560 KYIPHSSATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTN- 618
+YIPH SA + AS L N+P SQ K HQ +N F
Sbjct: 78 RYIPHRSAAQMEVASFLLSKENQPENSQTP-------TKKEHQKAWALNLNGFDVEEAKI 130
Query: 619 LSLSNKIRILQGPHANPVAV-----PQPGASVQTKGIKPGMP 655
L LS K + + N + V PG+S +T P +P
Sbjct: 131 LRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLP 172
>gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens]
Length = 514
Score = 32.0 bits (71), Expect = 2.5
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 567 ATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNKIR 626
AT+ ASA E L RP TS+ ++ ++ E + + S Q TN++ S+ ++
Sbjct: 145 ATKIASAPEKLGRDPRPQTSRISQEQVPEAS-----QLSQLTSNLAQVNRTNMTPSDPLQ 199
Query: 627 ILQGPH--ANPVAVPQPG 642
P + PV P PG
Sbjct: 200 TSLSPELVSTPVPPPPPG 217
>gi|223468617 family with sequence similarity 75, member C1 [Homo
sapiens]
Length = 1188
Score = 31.6 bits (70), Expect = 3.3
Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 30/196 (15%)
Query: 460 TTNESGVFITGHRGQPYTYDAKVKNFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKY 519
T GV + + QP + +N Q+ T E+K + V Y
Sbjct: 994 TRQNEGVQLLPSKKQPPSISHFGENIKQFFETIFSKKERKPAPVTAE-SQKTVKNRSCVY 1052
Query: 520 SSSIKVESLLTAISEVRKEIEDL----------QYREQKRIAIQGIITAIK---YIPHSS 566
SS + E L+TA+ ++ +E L Q R+Q + + G + Y HS
Sbjct: 1053 GSSAEAERLMTAVGQIPEENMSLCHARHASKVNQQRQQFQAPVCGFPCNHRHPFYSDHSR 1112
Query: 567 ATESASASE--TLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLSNK 624
A++S+ TL+N +RP+ + R D +P+ S + + L +
Sbjct: 1113 MLSYAASSQQATLKNQSRPNRDRQIR------------DQQPLKS--VRCNNEQWGLRHP 1158
Query: 625 IRILQGPHANPVAVPQ 640
+L +PV+ PQ
Sbjct: 1159 QLLLPKKAVSPVSPPQ 1174
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 31.6 bits (70), Expect = 3.3
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
Query: 484 NFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKE----- 538
+F+ +R+K+D + N+ I G + Y PE + S S + RK+
Sbjct: 300 SFLGGLRSKNDVLSRSNVCINGNHVYLEQPEAKGEIKDSSPSSS--PSPKGFRKKHLFSS 357
Query: 539 IEDLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNG 598
E+L K A G +++ + + SS +S + P S R + N
Sbjct: 358 TENLAAGSWKEPAEGGGLSSDRQLSESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANS 417
Query: 599 KRHQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHA-NPVAVPQPGASVQTKGIKPG 653
+ ++ + + +S ++ K + +G NP+ VP G+KPG
Sbjct: 418 EATKEAKESKKPESRRSSLLSLMTGKKDVAKGSEGENPLTVPGREKEGMLMGVKPG 473
>gi|50363228 RAB11 family interacting protein 1 isoform 1 [Homo
sapiens]
Length = 649
Score = 31.6 bits (70), Expect = 3.3
Identities = 37/176 (21%), Positives = 69/176 (39%), Gaps = 8/176 (4%)
Query: 484 NFIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEVRKE----- 538
+F+ +R+K+D + N+ I G + Y PE + S S + RK+
Sbjct: 300 SFLGGLRSKNDVLSRSNVCINGNHVYLEQPEAKGEIKDSSPSSS--PSPKGFRKKHLFSS 357
Query: 539 IEDLQYREQKRIAIQGIITAIKYIPHSSATESASASETLRNANRPSTSQAARVEIQERNG 598
E+L K A G +++ + + SS +S + P S R + N
Sbjct: 358 TENLAAGSWKEPAEGGGLSSDRQLSESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANS 417
Query: 599 KRHQDDEPVNSQYFQTTSTNLSLSNKIRILQGPHA-NPVAVPQPGASVQTKGIKPG 653
+ ++ + + +S ++ K + +G NP+ VP G+KPG
Sbjct: 418 EATKEAKESKKPESRRSSLLSLMTGKKDVAKGSEGENPLTVPGREKEGMLMGVKPG 473
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 31.2 bits (69), Expect = 4.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 SGESGQPEAGPSHAGLDWPNP-ERNRAGVPGGVIRRAGSQGPRS 44
+G SG E GP G P E RA PGG+ GS GP++
Sbjct: 42 AGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGPQA 85
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 31.2 bits (69), Expect = 4.3
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 2 SGESGQPEAGPSHAGLDWPNP-ERNRAGVPGGVIRRAGSQGPRS 44
+G SG E GP G P E RA PGG+ GS GP++
Sbjct: 42 AGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPGSAGPQA 85
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 30.8 bits (68), Expect = 5.6
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 565 SSATESASASETLRNANRPSTSQAARVEIQERNGKRHQDDEPVNSQYF-----QTTSTNL 619
S E S++ R+ P + R E + RN + QDD NS Y T+
Sbjct: 29 SLVVEFQSSASRCRSVYEPDRNALRRKERERRNQETQQDDGTFNSSYSLFSEPYKTNKGD 88
Query: 620 SLSNKIRILQGPH-------------ANPVAVPQPG 642
LSN+I+ G + ++ V VP+PG
Sbjct: 89 ELSNRIQNTLGNYDEMKDFLTDRSNQSHLVGVPKPG 124
>gi|79749430 FRAS1-related extracellular matrix protein 2 precursor
[Homo sapiens]
Length = 3169
Score = 30.8 bits (68), Expect = 5.6
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 29/155 (18%)
Query: 321 KLISTMEICLNLRDPPTNIIIIPEKQVKPEWRLPKLNHRFTTRSELDDMPENCICDVIGL 380
KLI+ E+ + RD P ++ QV L N R D+ EN I
Sbjct: 1549 KLITPFELTVEDRDTPDKLLKFTITQVPIHGHLLFNNTRPVMVFTKQDLNENLIS----- 1603
Query: 381 LVFVGRVQRSKKKENREDFWSYRWIHIADGTSEQPFIV--ELFSTSQPEIFENIYPMAYF 438
+ E+ ED +S+ + DGT ++ +F T +P++
Sbjct: 1604 -------YKHDGTESSEDSFSFT---VTDGTHTDFYVFPDTVFETRRPQVM--------- 1644
Query: 439 VCTQLKVVRNDNQVPKLLYLTTTNESGVFITGHRG 473
+++V+ DN VP++ + TGH G
Sbjct: 1645 ---KIQVLAVDNSVPQIAVNKGASTLRTLATGHLG 1676
>gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo
sapiens]
Length = 259
Score = 30.0 bits (66), Expect = 9.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 485 FIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEV 535
F+ W+ T + +Q+ + G P P +P T S I V SL++A S V
Sbjct: 111 FMMWLSTCRATAQQERLCQGASPPPPALPLTSVWVPSMISVASLVSASSAV 161
>gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo
sapiens]
Length = 259
Score = 30.0 bits (66), Expect = 9.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 485 FIQWIRTKSDSGEQKNMVIGGYYPYPPVPETFSKYSSSIKVESLLTAISEV 535
F+ W+ T + +Q+ + G P P +P T S I V SL++A S V
Sbjct: 111 FMMWLSTCRATAQQERLCQGASPPPPALPLTSVWVPSMISVASLVSASSAV 161
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 30.0 bits (66), Expect = 9.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 580 ANRPSTSQAARVEIQERNGKRHQDDEPVNSQYFQTTSTNLSLS-NKIRILQGPHANPVAV 638
A+ S S + +E + D EPV + Q T+T L + K + P P+A
Sbjct: 412 ASTKSVSFKSMLEDDLKLSSDEDDLEPVKTLTTQCTATELYQAVEKAKPRNNPVNPPLAT 471
Query: 639 PQPGASVQTKG 649
PQP +VQ G
Sbjct: 472 PQPPPAVQASG 482
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 30.0 bits (66), Expect = 9.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 49 VLEQIMDSPRQCVTPSEVVPVTVLAVQRYLLEDEPRDTVPKPPL 92
VL ++D P++ V P V+ VT QR L ++EP P PL
Sbjct: 1242 VLPDMVDEPKKGVKPKLVLNVTSELEQRKLSKNEPEVIKPYSPL 1285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,094,523
Number of Sequences: 37866
Number of extensions: 1753721
Number of successful extensions: 4345
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4328
Number of HSP's gapped (non-prelim): 26
length of query: 855
length of database: 18,247,518
effective HSP length: 111
effective length of query: 744
effective length of database: 14,044,392
effective search space: 10449027648
effective search space used: 10449027648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.