Guide to the Human Genome
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Name: TRPM3 Sequence: fasta or formatted (255aa) NCBI GI: 55953096
Description:

transient receptor potential cation channel, subfamily M, member 3 isoform c

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [1579aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1569aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1566aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1707aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1556aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1544aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [1554aa] transient receptor potential cation channel, subfamily M, member ...
alt prot [230aa] transient receptor potential cation channel, subfamily M, member ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         11           2
 C cysteine            1.6          4           1
 D aspartate           4.7         12           1
 E glutamate           4.3         11           2
 F phenylalanine       3.9         10           2
 G glycine            10.6         27           2
 H histidine           3.1          8           1
 I isoleucine          6.7         17           1
 K lysine              6.3         16           1
 L leucine            11.0         28           3
 M methionine          2.4          6           1
 N asparagine          3.1          8           1
 P proline             4.7         12           2
 Q glutamine           3.9         10           1
 R arginine            4.3         11           2
 S serine              7.1         18           1
 T threonine           5.1         13           2
 V valine              9.0         23           3
 W tryptophan          1.6          4           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfami... 
TRPM3                 1.000   transient receptor potential cation channel, subfam...
TRPM3                 1.000   transient receptor potential cation channel, subfam...
TRPM3                 0.862   transient receptor potential cation channel, subfam...
TRPM3                 0.862   transient receptor potential cation channel, subfami...
TRPM3                 0.862   transient receptor potential cation channel, subfam...
TRPM3                 0.862   transient receptor potential cation channel, subfam...
TRPM3                 0.862   transient receptor potential cation channel, subfam...
TRPM3                 0.862   transient receptor potential cation channel, subfam...
TRPM1                 0.755   transient receptor potential cation channel, subfami...
TRPM7                 0.655   transient receptor potential cation channel, subfam...
TRPM6                 0.558   transient receptor potential cation channel, subfami...
TRPM2                 0.323   transient receptor potential cation channel, subfamil...
TRPM8                 0.235   transient receptor potential cation channel, subfam...
TRPM4                 0.211   transient receptor potential cation channel, subfami...
TRPM5                 0.193   transient receptor potential cation channel, subfami...
CNDP1                 0.014   carnosinase 1 
VPS13B                0.008   vacuolar protein sorting 13B isoform 5 
VPS13B                0.008   vacuolar protein sorting 13B isoform 1 
TUBGCP6               0.006   tubulin, gamma complex associated protein 6 
PCNXL2                0.006   pecanex-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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