Search of human proteins with 188219638

Search of human proteins with 188219638

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
         (483 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                991   0.0  
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                 986   0.0  
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 986   0.0  
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  965   0.0  
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 793   0.0  
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 793   0.0  
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      738   0.0  
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    738   0.0  
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      733   0.0  
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]                  392   e-109
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]                  391   e-109
gi|189083681 paired box gene 6 isoform a [Homo sapiens]               259   3e-69
gi|4505615 paired box gene 6 isoform a [Homo sapiens]                 259   3e-69
gi|4580424 paired box gene 6 isoform b [Homo sapiens]                 250   2e-66
gi|9951920 paired box 5 [Homo sapiens]                                231   8e-61
gi|34878709 paired box protein 2 isoform c [Homo sapiens]             225   8e-59
gi|34878716 paired box protein 2 isoform d [Homo sapiens]             224   1e-58
gi|34878701 paired box protein 2 isoform b [Homo sapiens]             221   1e-57
gi|34878703 paired box protein 2 isoform e [Homo sapiens]             215   8e-56
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]                  214   2e-55
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]                  212   5e-55
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]                  212   5e-55
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]                  212   5e-55
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]                  212   5e-55
gi|34878699 paired box protein 2 isoform a [Homo sapiens]             211   9e-55
gi|197276661 paired box 1 [Homo sapiens]                              203   3e-52
gi|7242167 paired box 9 [Homo sapiens]                                196   3e-50
gi|170784824 paired box 4 [Homo sapiens]                              187   1e-47
gi|24497589 aristaless related homeobox [Homo sapiens]                111   1e-24
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]   104   2e-22

>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  991 bits (2561), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEY 120
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEY
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEY 120

Query: 121 KRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE 180
           KRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE
Sbjct: 121 KRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE 180

Query: 181 KKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 240
           KKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERT
Sbjct: 181 KKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERT 240

Query: 241 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 300
           HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT
Sbjct: 241 HYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPT 300

Query: 301 LPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRH 360
           LPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRH
Sbjct: 301 LPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTRH 360

Query: 361 GFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEP 420
           GFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEP
Sbjct: 361 GFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLEP 420

Query: 421 TTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKP 480
           TTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKP
Sbjct: 421 TTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLKP 480

Query: 481 DIA 483
           DIA
Sbjct: 481 DIA 483


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score =  986 bits (2549), Expect = 0.0
 Identities = 483/484 (99%), Positives = 483/484 (99%), Gaps = 1/484 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 419
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 420 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 479
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480

Query: 480 PDIA 483
           PDIA
Sbjct: 481 PDIA 484


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  986 bits (2549), Expect = 0.0
 Identities = 483/484 (99%), Positives = 483/484 (99%), Gaps = 1/484 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 419
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 420 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 479
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQSAFHYLK 480

Query: 480 PDIA 483
           PDIA
Sbjct: 481 PDIA 484


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  965 bits (2494), Expect = 0.0
 Identities = 473/474 (99%), Positives = 473/474 (99%), Gaps = 1/474 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 419
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLTGGLE 420

Query: 420 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 473
           PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS
Sbjct: 421 PTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 474


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  793 bits (2048), Expect = 0.0
 Identities = 391/398 (98%), Positives = 395/398 (99%), Gaps = 1/398 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 397
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV  ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  793 bits (2048), Expect = 0.0
 Identities = 391/398 (98%), Positives = 395/398 (99%), Gaps = 1/398 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 239
           EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER
Sbjct: 181 EKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFER 240

Query: 240 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
           THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP
Sbjct: 241 THYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 300

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR
Sbjct: 301 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTN 397
           HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQV  ++++
Sbjct: 361 HGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVPFIISS 398


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  738 bits (1906), Expect = 0.0
 Identities = 371/478 (77%), Positives = 409/478 (85%), Gaps = 17/478 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+ V TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEE-EADLERKEAEE 178
           YKRENPGMFSWEIRD+LLKD  CDR+TVPSVSSISR+LR KFGK EEE EAD   K+ ++
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFGKKEEEDEAD---KKEDD 177

Query: 179 SEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFE 238
            EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+AFE
Sbjct: 178 GEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFE 235

Query: 239 RTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAM 298
           RTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT M
Sbjct: 236 RTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGM 295

Query: 299 PTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAYCL 355
           PTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY  
Sbjct: 296 PTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY-- 350

Query: 356 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSPLT 415
              RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SPL 
Sbjct: 351 -GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISPLH 408

Query: 416 GGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 473
           GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 GGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 466


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  738 bits (1906), Expect = 0.0
 Identities = 373/490 (76%), Positives = 415/490 (84%), Gaps = 19/490 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+ V TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 176
           YKRENPGMFSWEIRD+LLKD  CDR+TVPS  VSSISR+LR KFGK EEE EAD   K+ 
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177

Query: 177 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 236
           ++ EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235

Query: 237 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 296
           FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295

Query: 297 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 353
            MPTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352

Query: 354 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 413
                RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408

Query: 414 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 473
           L GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQ+
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQT 468

Query: 474 AFHYLKPDIA 483
           A  YL  +++
Sbjct: 469 AVDYLAKNVS 478


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  733 bits (1893), Expect = 0.0
 Identities = 371/480 (77%), Positives = 409/480 (85%), Gaps = 19/480 (3%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           M  L G VPRMMRP PGQNYPR+GFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKP+ V TPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPS--VSSISRILRSKFGKGEEE-EADLERKEA 176
           YKRENPGMFSWEIRD+LLKD  CDR+TVPS  VSSISR+LR KFGK EEE EAD   K+ 
Sbjct: 121 YKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEEEDEAD---KKE 177

Query: 177 EESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERA 236
           ++ EKKAKHSIDGIL ++ +  + DEGSD++SEPDLPLKRKQRRSRTTFTAEQLEELE+A
Sbjct: 178 DDGEKKAKHSIDGILGDKGN--RLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKA 235

Query: 237 FERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPT 296
           FERTHYPDIYTREELAQR KLTEARVQVWFSNRRARWRKQAGANQL AFNHL+PGGFPPT
Sbjct: 236 FERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPT 295

Query: 297 AMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ---STIPSNPDSSSAY 353
            MPTLP YQL +++Y  T+I Q   D  STVHRPQPLPPST+HQ   +   +  D+SSAY
Sbjct: 296 GMPTLPPYQLPDSTYPTTTISQ---DGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY 352

Query: 354 CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDYALSP 413
                RH FSSY+DSF+ P+ PSN MNP + NGLSPQVM +L N   VP QPQ D+++SP
Sbjct: 353 ---GARHSFSSYSDSFMNPAAPSNHMNP-VSNGLSPQVMSILGNPSAVPPQPQADFSISP 408

Query: 414 LTGGLEPTTTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQS 473
           L GGL+  T++SASCSQR D +K  DSLPTSQ+YCPPTYSTTGYS+DPV GYQYGQYGQS
Sbjct: 409 LHGGLDSATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQS 468


>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
          Length = 206

 Score =  392 bits (1008), Expect = e-109
 Identities = 195/198 (98%), Positives = 195/198 (98%), Gaps = 1/198 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSERASA 197
           EKKAKHSIDGILSER  A
Sbjct: 181 EKKAKHSIDGILSERGKA 198


>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
          Length = 215

 Score =  391 bits (1004), Expect = e-109
 Identities = 194/195 (99%), Positives = 194/195 (99%), Gaps = 1/195 (0%)

Query: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60
           MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV
Sbjct: 1   MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIV 60

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK-VTTPDVEKKIEE 119
           EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK VTTPDVEKKIEE
Sbjct: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKQVTTPDVEKKIEE 120

Query: 120 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 179
           YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES
Sbjct: 121 YKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEES 180

Query: 180 EKKAKHSIDGILSER 194
           EKKAKHSIDGILSER
Sbjct: 181 EKKAKHSIDGILSER 195


>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  259 bits (663), Expect = 3e-69
 Identities = 166/409 (40%), Positives = 227/409 (55%), Gaps = 52/409 (12%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67

Query: 98  PGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRIL 157
           P AIGGSKP+V TP+V  KI +YKRE P +F+WEIRD+LL + VC  + +PSVSSI+R+L
Sbjct: 68  PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127

Query: 158 RSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------- 199
           R+   + ++  AD        L  +      +   +   S+ G  ++     Q       
Sbjct: 128 RNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENT 187

Query: 200 ---SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 255
              S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA + 
Sbjct: 188 NSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI 247

Query: 256 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 315
            L EAR+QVWFSNRRA+WR++         N        P+ +P   ++  S + YQP  
Sbjct: 248 DLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP-- 298

Query: 316 IPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYCL 355
           IPQ  +  SS                 +   P  PS    + +P  P      SS +  L
Sbjct: 299 IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCML 358

Query: 356 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 404
           P++        D++ PP   ++  +  +G   +    GL++    VP Q
Sbjct: 359 PTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406


>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
          Length = 422

 Score =  259 bits (663), Expect = 3e-69
 Identities = 166/409 (40%), Positives = 227/409 (55%), Gaps = 52/409 (12%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+VS+GCVSKIL RY ETGSIR
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67

Query: 98  PGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRIL 157
           P AIGGSKP+V TP+V  KI +YKRE P +F+WEIRD+LL + VC  + +PSVSSI+R+L
Sbjct: 68  PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127

Query: 158 RSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILSERASAPQ------- 199
           R+   + ++  AD        L  +      +   +   S+ G  ++     Q       
Sbjct: 128 RNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENT 187

Query: 200 ---SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRA 255
              S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERTHYPD++ RE LA + 
Sbjct: 188 NSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI 247

Query: 256 KLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTS 315
            L EAR+QVWFSNRRA+WR++         N        P+ +P   ++  S + YQP  
Sbjct: 248 DLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPISSSF--STSVYQP-- 298

Query: 316 IPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSNP-----DSSSAYCL 355
           IPQ  +  SS                 +   P  PS    + +P  P      SS +  L
Sbjct: 299 IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYSCML 358

Query: 356 PSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGVPHQ 404
           P++        D++ PP   ++  +  +G   +    GL++    VP Q
Sbjct: 359 PTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSVPVQ 406


>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
          Length = 436

 Score =  250 bits (638), Expect = 2e-66
 Identities = 166/423 (39%), Positives = 227/423 (53%), Gaps = 66/423 (15%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLR--------------VSHGCV 83
           VNQLGGVF+NGRPLP+  R KIVE+AH G RPC ISR L+              VS+GCV
Sbjct: 8   VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67

Query: 84  SKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCD 143
           SKIL RY ETGSIRP AIGGSKP+V TP+V  KI +YKRE P +F+WEIRD+LL + VC 
Sbjct: 68  SKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCT 127

Query: 144 RNTVPSVSSISRILRSKFGKGEEEEAD--------LERKEAEESEKKAKH---SIDGILS 192
            + +PSVSSI+R+LR+   + ++  AD        L  +      +   +   S+ G  +
Sbjct: 128 NDNIPSVSSINRVLRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPT 187

Query: 193 ERASAPQ----------SDEGSDID-SEPDLPLKRKQRRSRTTFTAEQLEELERAFERTH 241
           +     Q          S  G D D ++  L LKRK +R+RT+FT EQ+E LE+ FERTH
Sbjct: 188 QDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTH 247

Query: 242 YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTL 301
           YPD++ RE LA +  L EAR+QVWFSNRRA+WR++         N        P+ +P  
Sbjct: 248 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR-----NQRRQASNTPSHIPIS 302

Query: 302 PTYQLSETSYQPTSIPQAVSDPSS---------------TVHRPQPLPPSTVHQSTIPSN 346
            ++  S + YQP  IPQ  +  SS                 +   P  PS    + +P  
Sbjct: 303 SSF--STSVYQP--IPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQ 358

Query: 347 P-----DSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGV 401
           P      SS +  LP++        D++ PP   ++  +  +G   +    GL++    V
Sbjct: 359 PPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTST-GLISPGVSV 417

Query: 402 PHQ 404
           P Q
Sbjct: 418 PVQ 420


>gi|9951920 paired box 5 [Homo sapiens]
          Length = 391

 Score =  231 bits (590), Expect = 8e-61
 Identities = 152/374 (40%), Positives = 199/374 (53%), Gaps = 43/374 (11%)

Query: 25  FPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVS 84
           +P   ++  G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVS
Sbjct: 7   YPTPRTSRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVS 66

Query: 85  KILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDR 144
           KIL RY ETGSI+PG IGGSKPKV TP V +KI EYKR+NP MF+WEIRD+LL + VCD 
Sbjct: 67  KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDN 126

Query: 145 NTVPSVSSISRILRSKFGKGEEEEAD------------LERKEAEESEKKAKHSIDGIL- 191
           +TVPSVSSI+RI+R+K  +   +                +          + +SI GIL 
Sbjct: 127 DTVPSVSSINRIIRTKVQQPPNQPVPASSHSIVSTGSVTQVSSVSTDSAGSSYSISGILG 186

Query: 192 ----SERASAPQSDEG---SDIDSEPDLP---LKRKQRRSRTTFTAEQLEELERAFERTH 241
               S   +  + DEG   S + +   LP     RKQ R    FT +QLE L+R FER H
Sbjct: 187 ITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRG-DLFTQQQLEVLDRVFERQH 245

Query: 242 YPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTAMPTL 301
           Y DI+T  E  +  + TE       +      +    +         +PG   P + P +
Sbjct: 246 YSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGSSVPG---PQSYPIV 302

Query: 302 PTYQLSETSY--QPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
               L+ T+    P  +P A     S        P  T     +P +  S S Y  P   
Sbjct: 303 TGRDLASTTLPGYPPHVPPAGQGSYSA-------PTLT---GMVPGSEFSGSPYSHPQ-- 350

Query: 360 HGFSSYTDSFVPPS 373
             +SSY DS+  P+
Sbjct: 351 --YSSYNDSWRFPN 362


>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
          Length = 396

 Score =  225 bits (573), Expect = 8e-59
 Identities = 156/392 (39%), Positives = 208/392 (53%), Gaps = 65/392 (16%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSI+PG IGGSKPKV TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 76  GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135

Query: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-ER 194
           +RI+R+K  +      D                       +  ++    +SI+GIL   R
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195

Query: 195 ASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIY 246
           ++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD++
Sbjct: 196 SNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVF 254

Query: 247 TREELAQRAKLTEARVQVWF-------SNRRARWRKQAGAN------------QLMAFNH 287
              E  +  +  E  +           S+  A    + G+N            + MA   
Sbjct: 255 QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTT 314

Query: 288 L--IPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTV-----HRPQPLPPSTVHQ 340
           L   P   PPT   + PT  L+        +P+A   PSS++      +   +PP    Q
Sbjct: 315 LPGYPPHVPPTGQGSYPTSTLA------GMVPEAAVGPSSSLMSKPGRKLAEVPPCV--Q 366

Query: 341 STIPSNPDSSSAYCLPSTRHGFSSYTDSFVPP 372
            T  S+P + +A   PSTR   +   DS  PP
Sbjct: 367 PTGASSPATRTA--TPSTR-PTTRLGDSATPP 395


>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
          Length = 408

 Score =  224 bits (571), Expect = 1e-58
 Identities = 150/382 (39%), Positives = 197/382 (51%), Gaps = 50/382 (13%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSI+PG IGGSKPKV TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 76  GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135

Query: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-ER 194
           +RI+R+K  +      D                       +  ++    +SI+GIL   R
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195

Query: 195 ASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIY 246
           ++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD++
Sbjct: 196 SNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVF 254

Query: 247 TREELAQRAKLTEARVQVWF-------SNRRARWRKQAGANQLMAFNHLIPGGFPPTAMP 299
              E  +  +  E  +           S+  A    + G+N      + +  G    A  
Sbjct: 255 QASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTG-RDMAST 313

Query: 300 TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLPSTR 359
           TLP Y        P  +P     P+     P       V  S    NP S   Y   +  
Sbjct: 314 TLPGY--------PPHVP-----PTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYTAYNEA 360

Query: 360 HGFSSYTDSFVPPSGPSNPMNP 381
             FS+     +PP GP  P+ P
Sbjct: 361 WRFSN-PALLMPPPGPPLPLLP 381


>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
          Length = 393

 Score =  221 bits (562), Expect = 1e-57
 Identities = 121/244 (49%), Positives = 154/244 (63%), Gaps = 28/244 (11%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSI+PG IGGSKPKV TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 76  GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135

Query: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS-ER 194
           +RI+R+K  +      D                       +  ++    +SI+GIL   R
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195

Query: 195 ASAPQSDEGSDI--------DSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIY 246
           ++  +     D+        DS+  +   RK  R+  TFT +QLE L+R FER  YPD++
Sbjct: 196 SNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRA-DTFTQQQLEALDRVFERPSYPDVF 254

Query: 247 TREE 250
              E
Sbjct: 255 QASE 258


>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
          Length = 431

 Score =  215 bits (547), Expect = 8e-56
 Identities = 152/411 (36%), Positives = 194/411 (47%), Gaps = 85/411 (20%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSI+PG IGGSKPKV TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 76  GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135

Query: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS--- 192
           +RI+R+K  +      D                       +  ++    +SI+GIL    
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195

Query: 193 -----------------------------------ERASAPQSDEGSDIDSEPDLPLKRK 217
                                                 S P  D  S +DS       RK
Sbjct: 196 SNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRK 249

Query: 218 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWF-------SNRR 270
             R+  TFT +QLE L+R FER  YPD++   E  +  +  E  +           S+  
Sbjct: 250 HLRA-DTFTQQQLEALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLS 308

Query: 271 ARWRKQAGANQLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRP 330
           A    + G+N      + +  G    A  TLP Y        P  +P     P+     P
Sbjct: 309 ASTNPELGSNVSGTQTYPVVTG-RDMASTTLPGY--------PPHVP-----PTGQGSYP 354

Query: 331 QPLPPSTVHQSTIPSNPDSSSAYCLPSTRHGFSSYTDSFVPPSGPSNPMNP 381
                  V  S    NP S   Y   +    FS+     +PP GP  P+ P
Sbjct: 355 TSTLAGMVPGSEFSGNPYSHPQYTAYNEAWRFSN-PALLMPPPGPPLPLLP 404


>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
          Length = 450

 Score =  214 bits (544), Expect = 2e-55
 Identities = 154/429 (35%), Positives = 208/429 (48%), Gaps = 75/429 (17%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 69  GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128

Query: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
           +RI+R+K                    G      + +   E+ +S+   + +SI+G+L  
Sbjct: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188

Query: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
               S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP+
Sbjct: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247

Query: 245 IYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGG---FPPTAMP-- 299
            Y                        +  + + G   L   N  +  G     P+  P  
Sbjct: 248 AYASP---------------------SHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLG 286

Query: 300 ----TLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPST------VHQSTIPSN--P 347
               T  TY +    + P +I Q   + SS+   P  L  S       V     P N  P
Sbjct: 287 RNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFP 346

Query: 348 DSSSAY------CLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQVMGLLTNHGGV 401
            ++S Y       L S R         + PP  P++       + ++  V G   +    
Sbjct: 347 HAASVYGQFTGQALLSGREMVGPTLPGY-PPHIPTSGQGSYASSAIAGMVAGSEYSGNAY 405

Query: 402 PHQPQTDYA 410
            H P + Y+
Sbjct: 406 GHTPYSSYS 414


>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
          Length = 321

 Score =  212 bits (540), Expect = 5e-55
 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 69  GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128

Query: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
           +RI+R+K                    G      + +   E+ +S+   + +SI+G+L  
Sbjct: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188

Query: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
               S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP+
Sbjct: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247

Query: 245 IY 246
            Y
Sbjct: 248 AY 249


>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
          Length = 287

 Score =  212 bits (540), Expect = 5e-55
 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 69  GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128

Query: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
           +RI+R+K                    G      + +   E+ +S+   + +SI+G+L  
Sbjct: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188

Query: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
               S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP+
Sbjct: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247

Query: 245 IY 246
            Y
Sbjct: 248 AY 249


>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
          Length = 398

 Score =  212 bits (540), Expect = 5e-55
 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 69  GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128

Query: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
           +RI+R+K                    G      + +   E+ +S+   + +SI+G+L  
Sbjct: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188

Query: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
               S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP+
Sbjct: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247

Query: 245 IY 246
            Y
Sbjct: 248 AY 249


>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
          Length = 387

 Score =  212 bits (540), Expect = 5e-55
 Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 30/242 (12%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G +NQLGG F+NGRPLP  +R +IV++AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 9   GHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYET 68

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSIRPG IGGSKPKV TP V +KI +YKR+NP MF+WEIRD+LL + VCD +TVPSVSSI
Sbjct: 69  GSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSI 128

Query: 154 SRILRSKF-------------------GKGEEEEADLERKEAEESEK-KAKHSIDGIL-- 191
           +RI+R+K                    G      + +   E+ +S+   + +SI+G+L  
Sbjct: 129 NRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGI 188

Query: 192 ----SERASAPQSDEGS---DIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPD 244
               S++     SD+ S    IDS+      RK  R+   F+   LE LE  FER HYP+
Sbjct: 189 AQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRT-DAFSQHHLEPLECPFERQHYPE 247

Query: 245 IY 246
            Y
Sbjct: 248 AY 249


>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
          Length = 416

 Score =  211 bits (538), Expect = 9e-55
 Identities = 123/273 (45%), Positives = 151/273 (55%), Gaps = 63/273 (23%)

Query: 34  GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQET 93
           G G VNQLGGVF+NGRPLP+ +R +IVE+AH G+RPC ISRQLRVSHGCVSKIL RY ET
Sbjct: 16  GHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYET 75

Query: 94  GSIRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSI 153
           GSI+PG IGGSKPKV TP V  KI EYKR+NP MF+WEIRD+LL + +CD +TVPSVSSI
Sbjct: 76  GSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSI 135

Query: 154 SRILRSKFGKGEEEEAD------------------LERKEAEESEKKAKHSIDGILS--- 192
           +RI+R+K  +      D                       +  ++    +SI+GIL    
Sbjct: 136 NRIIRTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPR 195

Query: 193 -----------------------------------ERASAPQSDEGSDIDSEPDLPLKRK 217
                                                 S P  D  S +DS       RK
Sbjct: 196 SNGEKRKRDEVEVYTDPAHIRGGGGLHLVWTLRDVSEGSVPNGDSQSGVDS------LRK 249

Query: 218 QRRSRTTFTAEQLEELERAFERTHYPDIYTREE 250
             R+  TFT +QLE L+R FER  YPD++   E
Sbjct: 250 HLRA-DTFTQQQLEALDRVFERPSYPDVFQASE 281


>gi|197276661 paired box 1 [Homo sapiens]
          Length = 534

 Score =  203 bits (516), Expect = 3e-52
 Identities = 114/213 (53%), Positives = 141/213 (66%), Gaps = 9/213 (4%)

Query: 5   AGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQ----GRVNQLGGVFINGRPLPNHIRHKIV 60
           A A+P    P PG  +P      +++ PL      G VNQLGGVF+NGRPLPN IR +IV
Sbjct: 67  AQALPDCAGPSPG--HPGHPGARQLAGPLAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIV 124

Query: 61  EMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPKVTTPDVEKKIEEY 120
           E+A  GIRPC ISRQLRVSHGCVSKIL RY ETGSI PGAIGGSKP+VTTP+V K I +Y
Sbjct: 125 ELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDY 184

Query: 121 KRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRILRSKFGKGEEEEADLERKEAEESE 180
           K+ +PG+F+WEIRD+LL D VCD+  VPSVSSISRILR+K G    +    E  +   S+
Sbjct: 185 KQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIG-SLAQPGPYEASKQPPSQ 243

Query: 181 KKAKHSIDGILSERASAPQSDEGSDIDSEPDLP 213
               +  + I      +P S  G+ + S P +P
Sbjct: 244 PTLPY--NHIYQYPYPSPVSPTGAKMGSHPGVP 274


>gi|7242167 paired box 9 [Homo sapiens]
          Length = 341

 Score =  196 bits (499), Expect = 3e-50
 Identities = 96/127 (75%), Positives = 107/127 (84%)

Query: 36  GRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGS 95
           G VNQLGGVF+NGRPLPN IR +IVE+A  GIRPC ISRQLRVSHGCVSKIL RY ETGS
Sbjct: 6   GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGS 65

Query: 96  IRPGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISR 155
           I PGAIGGSKP+VTTP V K I  YK+ +PG+F+WEIRD+LL D VCD+  VPSVSSISR
Sbjct: 66  ILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISR 125

Query: 156 ILRSKFG 162
           ILR+K G
Sbjct: 126 ILRNKIG 132


>gi|170784824 paired box 4 [Homo sapiens]
          Length = 343

 Score =  187 bits (476), Expect = 1e-47
 Identities = 124/340 (36%), Positives = 174/340 (51%), Gaps = 47/340 (13%)

Query: 38  VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
           +NQLGG+F+NGRPLP   R +IV +A  G+RPC ISR L+VS+GCVSKIL RY  TG + 
Sbjct: 1   MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60

Query: 98  PGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRIL 157
           P  IGGSKP++ TP V  +I + K E P +F+WEI+ +L  + +C ++  PSVSSI+R+L
Sbjct: 61  PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120

Query: 158 RSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRK 217
           R+               + ++     +     +L+     P S   +   + P       
Sbjct: 121 RA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG-----T 161

Query: 218 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ- 276
             R+RT F+  Q E LE+ F+R  YPD   R +LA    L E  V+VWFSNRRA+WR+Q 
Sbjct: 162 GHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQE 221

Query: 277 --------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTSI 316
                    GA+Q +    +          PG  P  A+P L    L  + YQ    T+ 
Sbjct: 222 KLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATAP 279

Query: 317 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSSSAYCLP 356
            + +SD          L P   H    P++ D S   CLP
Sbjct: 280 ERCLSDTPPKA----CLKPCWGHLPPQPNSLD-SGLLCLP 314


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  111 bits (278), Expect = 1e-24
 Identities = 59/92 (64%), Positives = 67/92 (72%), Gaps = 11/92 (11%)

Query: 198 PQSDEGSD----------IDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYT 247
           P+  EG D           DSE  L LKRKQRR RTTFT+ QLEELERAF++THYPD++T
Sbjct: 299 PEDAEGKDGEDSVCLSAGSDSEEGL-LKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFT 357

Query: 248 REELAQRAKLTEARVQVWFSNRRARWRKQAGA 279
           REELA R  LTEARVQVWF NRRA+WRK+  A
Sbjct: 358 REELAMRLDLTEARVQVWFQNRRAKWRKREKA 389


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score =  104 bits (259), Expect = 2e-22
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)

Query: 166 EEEADLERKEAEESEKKAKHSI--DGILSERASAPQSDEGSDIDSEPDLPLKRKQRRSRT 223
           EE  D+   +A+E+  +A  S+     L+  +  PQ D    ++SE     KRKQRR+RT
Sbjct: 43  EEAGDMVAAQADENVGEAGRSLLESPGLTSGSDTPQQDN-DQLNSEEKK--KRKQRRNRT 99

Query: 224 TFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAG---AN 280
           TF + QL+ LER FERTHYPD + RE+LA+R  LTEARVQVWF NRRA++R+      AN
Sbjct: 100 TFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLAN 159

Query: 281 QLMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQAVSDPSSTVHRPQPLPPSTVHQ 340
           +  +      G       P +P      T Y        +S  +++ +R   LP   +H+
Sbjct: 160 KNASLLKSYSGDVTAVEQPIVPRPAPRPTDY--------LSWGTASPYRSSSLPRCCLHE 211


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,252,790
Number of Sequences: 37866
Number of extensions: 1205237
Number of successful extensions: 6337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 5220
Number of HSP's gapped (non-prelim): 1411
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.