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Search of human proteins with 188035877
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo
sapiens]
(619 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo sap... 1225 0.0
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 268 1e-71
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi... 266 3e-71
gi|21071032 DEAD-box protein abstrakt [Homo sapiens] 249 4e-66
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 242 8e-64
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 242 8e-64
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 239 4e-63
gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens] 239 5e-63
gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens] 239 5e-63
gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ... 238 2e-62
gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [... 238 2e-62
gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ... 238 2e-62
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 232 9e-61
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 230 3e-60
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 230 3e-60
gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo sap... 220 3e-57
gi|38569503 ATP-dependent RNA helicase ROK1 isoform b [Homo sapi... 217 2e-56
gi|38569505 ATP-dependent RNA helicase ROK1 isoform a [Homo sapi... 217 2e-56
gi|7661920 eukaryotic translation initiation factor 4A, isoform ... 208 1e-53
gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo sapi... 204 1e-52
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ... 204 2e-52
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 204 3e-52
gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo sapi... 196 4e-50
gi|83700235 eukaryotic translation initiation factor 4A2 [Homo s... 196 4e-50
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 196 7e-50
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... 188 1e-47
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 188 1e-47
gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapi... 181 2e-45
gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ... 181 2e-45
gi|4758112 HLA-B associated transcript 1 [Homo sapiens] 179 5e-45
>gi|188035877 DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 [Homo
sapiens]
Length = 619
Score = 1225 bits (3169), Expect = 0.0
Identities = 619/619 (100%), Positives = 619/619 (100%)
Query: 1 MFVPRSLKIKRNANDDGKSCVAKIIKPDPEDLQLDKSRDVPVDAVATEAATIDRHISESC 60
MFVPRSLKIKRNANDDGKSCVAKIIKPDPEDLQLDKSRDVPVDAVATEAATIDRHISESC
Sbjct: 1 MFVPRSLKIKRNANDDGKSCVAKIIKPDPEDLQLDKSRDVPVDAVATEAATIDRHISESC 60
Query: 61 PFPSPGGQLAEVHSVSPEQGAKDSHPSEEPVKSFSKTQRWAEPGEPICVVCGRYGEYICD 120
PFPSPGGQLAEVHSVSPEQGAKDSHPSEEPVKSFSKTQRWAEPGEPICVVCGRYGEYICD
Sbjct: 61 PFPSPGGQLAEVHSVSPEQGAKDSHPSEEPVKSFSKTQRWAEPGEPICVVCGRYGEYICD 120
Query: 121 KTDEDVCSLECKAKHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQED 180
KTDEDVCSLECKAKHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQED
Sbjct: 121 KTDEDVCSLECKAKHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQED 180
Query: 181 QIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLG 240
QIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLG
Sbjct: 181 QIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLG 240
Query: 241 RDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPR 300
RDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPR
Sbjct: 241 RDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPR 300
Query: 301 MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLK 360
MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLK
Sbjct: 301 MKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLK 360
Query: 361 MGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI 420
MGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI
Sbjct: 361 MGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQI 420
Query: 421 ILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKS 480
ILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKS
Sbjct: 421 ILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKS 480
Query: 481 QIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLG 540
QIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLG
Sbjct: 481 QIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLG 540
Query: 541 QNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLV 600
QNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLV
Sbjct: 541 QNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLV 600
Query: 601 TGANLMDIIRKHDKSNSQK 619
TGANLMDIIRKHDKSNSQK
Sbjct: 601 TGANLMDIIRKHDKSNSQK 619
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 268 bits (684), Expect = 1e-71
Identities = 156/441 (35%), Positives = 258/441 (58%), Gaps = 13/441 (2%)
Query: 144 EKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQL-GILVQGQEVTRPI 202
++ KL P P ++ Y E P + + ++++ + ++ GI V+G+ +PI
Sbjct: 313 KQRKLLEPVDHGKIEYEPFRKNF-YVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPI 371
Query: 203 IDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVI 262
+ C + + ++LKK GYE PTPIQ Q IP + GRD++ A TGSGKT AFLLP+
Sbjct: 372 KSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF 431
Query: 263 -----MRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLY 317
R+L E + P A+I+TPTRELA+QI ++ K+ L ++ V + GG + Q+
Sbjct: 432 RHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLG-LRVVCVYGGTGISEQIA 490
Query: 318 RLQQHVKVIIATPGRLLDIIKQSS---VELCGVKIVVVDEADTMLKMGFQQQVLDILENI 374
L++ ++I+ TPGR++D++ +S L V VV+DEAD M MGF+ QV+ I++N+
Sbjct: 491 ELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNV 550
Query: 375 PNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLF 434
D QT++ SAT P ++E LA ++L P+ + G +++ C++V Q ++ +E+ K KL
Sbjct: 551 RPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLL 610
Query: 435 EILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEG 494
E+L + V++FVD + AD L + + + + +S+H Q +R +I+ G
Sbjct: 611 ELLGHYQE-SGSVIIFVDKQEHADGLLKDLMRAS-YPCMSLHGGIDQYDRDSIINDFKNG 668
Query: 495 DYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSK 554
+++V+T V RGLD+ + LVVN+ P+ ++YVH+ GR GR G G A TFI +
Sbjct: 669 TCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQA 728
Query: 555 RLFWDIAKRVKPTGSILPPQL 575
R DI K ++ +G+ +PP L
Sbjct: 729 RYAGDIIKALELSGTAVPPDL 749
>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
sapiens]
Length = 820
Score = 266 bits (681), Expect = 3e-71
Identities = 152/430 (35%), Positives = 248/430 (57%), Gaps = 40/430 (9%)
Query: 186 KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
++ I +G ++ PI ++ SLP + + K GY+ PTPIQ Q IP+GL RDI+
Sbjct: 374 REDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIG 433
Query: 246 SADTGSGKTAAFLLPVIM---------RALFESKTPSALILTPTRELAIQIERQAKELMS 296
A+TGSGKTAAFL+P+++ R + P A+IL PTRELA QIE + +
Sbjct: 434 VAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGK 493
Query: 297 GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEAD 356
L ++TV ++GG+ Q +RL+ +++IATPGRL+D+++ + L VV+DEAD
Sbjct: 494 PL-GIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD 552
Query: 357 TMLKMGFQQQVLDILENIP--------------------------NDCQTILVSATIPTS 390
M+ MGF+ V ILE++P QT++ +AT+P +
Sbjct: 553 RMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPA 612
Query: 391 IEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVF 450
+E+LA L P + G P V Q + + + K+KKL IL ++ F PP+++F
Sbjct: 613 VERLARSYLRRPAVVYIGSAGKPHERVEQKVFLMSESEKRKKLLAIL--EQGFDPPIIIF 670
Query: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
V+ K G D+L+++++K+ G + ++H K Q +R+ L L G +++V+T V GRG+D
Sbjct: 671 VNQKKGCDVLAKSLEKM-GYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGID 729
Query: 511 LISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRV-KPTGS 569
+ V +VVN+DM ++++Y+H+IGR GR G++G AITF+ +F+++ + + + S
Sbjct: 730 IQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVS 789
Query: 570 ILPPQLLNSP 579
PP+L N P
Sbjct: 790 SCPPELANHP 799
>gi|21071032 DEAD-box protein abstrakt [Homo sapiens]
Length = 622
Score = 249 bits (637), Expect = 4e-66
Identities = 157/472 (33%), Positives = 245/472 (51%), Gaps = 37/472 (7%)
Query: 121 KTDEDVCSLECKAKHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQED 180
K +E + + + L+ VKE + +P K P ++L++ E+
Sbjct: 111 KEEEKILESVAEGRALMSVKEMAKGITYDDPIKTSWTPPR------------YVLSMSEE 158
Query: 181 QIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLG 240
+ E ++++ ILV+G + PI F+ P + LKK G PTPIQ+Q IP L G
Sbjct: 159 RHERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSG 218
Query: 241 RDILASADTGSGKTAAFLLPVIMRALFESKT--------PSALILTPTRELAIQ----IE 288
RD++ A TGSGKT F LPVIM L + K P LI+ P+RELA Q +E
Sbjct: 219 RDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILE 278
Query: 289 RQAKELMS-GLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGV 347
+ L P ++ L +GG+ + Q+ ++ V +++ATPGRL+D++++ V L
Sbjct: 279 YYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDIC 338
Query: 348 KIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIIT 407
+ + +DEAD M+ MGF+ + I QT+L SAT+P I+ A L PV I
Sbjct: 339 RYLALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINV 398
Query: 408 GEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKI 467
G +V Q + +V++ AK L E L PPVL+F + K D + E + +
Sbjct: 399 GRAGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYL-LL 454
Query: 468 TGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMD 527
G+++++IH K Q ER ++ EG +V+V+T V +GLD +++ V+N+DMP ++
Sbjct: 455 KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIE 514
Query: 528 EYVHQIGRVGRLGQNGTAITFINN--------NSKRLFWDIAKRVKPTGSIL 571
YVH+IGR GR G G A TFIN + K L + ++V P +L
Sbjct: 515 NYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 566
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 242 bits (617), Expect = 8e-64
Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 10/426 (2%)
Query: 159 ESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVT-RPIIDFEHCSLPEVLNHN 217
E P Y EHP + L +++ L+++ I V+G +V +P+ F H + P+ +
Sbjct: 126 ELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDV 185
Query: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA-----LFESKTP 272
L + PTPIQ Q P+ L GRD++ A TGSGKT A+LLP I+ L P
Sbjct: 186 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGP 245
Query: 273 SALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGR 332
L+L PTRELA Q+++ A + R+K+ + GG P PQ+ L++ V++ IATPGR
Sbjct: 246 ICLVLAPTRELAQQVQQVADDY-GKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 304
Query: 333 LLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIE 392
L+D ++ L +V+DEAD ML MGF+ Q+ I++ I D QT++ SAT P +
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 364
Query: 393 QLASQLLHNPVRIITGEKNLPC-ANVRQIILWVEDPAKKKKLFEILNDKKLFKP-PVLVF 450
QLA L + +I G L N+ QI+ + K KL +++ + K ++F
Sbjct: 365 QLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIF 424
Query: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
V+ K D L+ +++ G ++ IH +KSQ ER +L G ++++T V RGLD
Sbjct: 425 VETKRRCDDLTRRMRR-DGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 483
Query: 511 LISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSI 570
+ V+ V+N+D P+S ++YVH+IGR R GTA TF + + ++ K ++
Sbjct: 484 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQA 543
Query: 571 LPPQLL 576
+ P+L+
Sbjct: 544 INPKLM 549
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 242 bits (617), Expect = 8e-64
Identities = 146/426 (34%), Positives = 232/426 (54%), Gaps = 10/426 (2%)
Query: 159 ESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVT-RPIIDFEHCSLPEVLNHN 217
E P Y EHP + L +++ L+++ I V+G +V +P+ F H + P+ +
Sbjct: 126 ELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDV 185
Query: 218 LKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA-----LFESKTP 272
L + PTPIQ Q P+ L GRD++ A TGSGKT A+LLP I+ L P
Sbjct: 186 LMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGP 245
Query: 273 SALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGR 332
L+L PTRELA Q+++ A + R+K+ + GG P PQ+ L++ V++ IATPGR
Sbjct: 246 ICLVLAPTRELAQQVQQVADDY-GKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 304
Query: 333 LLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIE 392
L+D ++ L +V+DEAD ML MGF+ Q+ I++ I D QT++ SAT P +
Sbjct: 305 LIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 364
Query: 393 QLASQLLHNPVRIITGEKNLPC-ANVRQIILWVEDPAKKKKLFEILNDKKLFKP-PVLVF 450
QLA L + +I G L N+ QI+ + K KL +++ + K ++F
Sbjct: 365 QLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIF 424
Query: 451 VDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLD 510
V+ K D L+ +++ G ++ IH +KSQ ER +L G ++++T V RGLD
Sbjct: 425 VETKRRCDDLTRRMRR-DGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 483
Query: 511 LISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSI 570
+ V+ V+N+D P+S ++YVH+IGR R GTA TF + + ++ K ++
Sbjct: 484 VEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQA 543
Query: 571 LPPQLL 576
+ P+L+
Sbjct: 544 INPKLM 549
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 239 bits (611), Expect = 4e-63
Identities = 146/428 (34%), Positives = 231/428 (53%), Gaps = 15/428 (3%)
Query: 159 ESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNL 218
E P Y+EHP + ++E ++ I V+G +P+++F + P + +
Sbjct: 50 ELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVI 109
Query: 219 KKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRA-----LFESKTPS 273
+ + PT IQ Q PV L G D++ A TGSGKT ++LLP I+ L P
Sbjct: 110 ARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 169
Query: 274 ALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRL 333
L+L PTRELA Q+++ A E R+K+ + GG P PQ+ L++ V++ IATPGRL
Sbjct: 170 CLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRL 228
Query: 334 LDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQ 393
+D ++ L +V+DEAD ML MGF+ Q+ I++ I D QT++ SAT P + Q
Sbjct: 229 IDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQ 288
Query: 394 LASQLLHNPVRIITGEKNLPC-ANVRQIILWVEDPAKKKKLF----EILNDKKLFKPPVL 448
LA L + + I G L N+ QI+ D K +KL EI+++K + +
Sbjct: 289 LAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEK---ENKTI 345
Query: 449 VFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRG 508
VFV+ K D L+ +++ G ++ IH +KSQ ER +L G ++++T V RG
Sbjct: 346 VFVETKRRCDELTRKMRR-DGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRG 404
Query: 509 LDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTG 568
LD+ V+ V+N+D P+S ++Y+H+IGR R + GTA TF N+ + D+ ++
Sbjct: 405 LDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREAN 464
Query: 569 SILPPQLL 576
+ P+LL
Sbjct: 465 QAINPKLL 472
>gi|45446747 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 239 bits (610), Expect = 5e-63
Identities = 152/460 (33%), Positives = 240/460 (52%), Gaps = 17/460 (3%)
Query: 156 SEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLN 215
SE + P Y EH I NL Q+ +L+ +L + V G RP F H E L
Sbjct: 206 SEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLM 265
Query: 216 HNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT---- 271
H ++KS Y PTPIQ Q +PV L GRD++ A TGSGKTAAF+ P+++ + + +
Sbjct: 266 HQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGD 325
Query: 272 -PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATP 330
P A+I+ PTREL QI + K +++V + GG + Q LQ+ ++++ TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 384
Query: 331 GRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTS 390
GRL+D +K+ + L V +V DEAD M MGF+ QV I ++ D QT+L SAT
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 444
Query: 391 IEQLASQLLHNPVRIITGEKNLPCANVRQII-LWVEDPAK----KKKLFEILNDKKLFKP 445
IE+LA +L +P+R++ G+ +V QI+ + P+K ++L E +
Sbjct: 445 IEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS---- 500
Query: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
VL+FV K A+ L+ + K G +H + Q ER ++ + D V+V+T V
Sbjct: 501 -VLLFVTKKANAEELANNL-KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558
Query: 506 GRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVK 565
RGLD+ S++ V+N+D+ +D + H+IGR GR G+ G A T + D+ + ++
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Query: 566 PTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANL 605
+ +LL+ + RK + K + + + G L
Sbjct: 619 GANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGL 658
>gi|45446743 DEAD box polypeptide 42 protein [Homo sapiens]
Length = 938
Score = 239 bits (610), Expect = 5e-63
Identities = 152/460 (33%), Positives = 240/460 (52%), Gaps = 17/460 (3%)
Query: 156 SEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLN 215
SE + P Y EH I NL Q+ +L+ +L + V G RP F H E L
Sbjct: 206 SEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLM 265
Query: 216 HNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKT---- 271
H ++KS Y PTPIQ Q +PV L GRD++ A TGSGKTAAF+ P+++ + + +
Sbjct: 266 HQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGD 325
Query: 272 -PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATP 330
P A+I+ PTREL QI + K +++V + GG + Q LQ+ ++++ TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAY-NLRSVAVYGGGSMWEQAKALQEGAEIVVCTP 384
Query: 331 GRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTS 390
GRL+D +K+ + L V +V DEAD M MGF+ QV I ++ D QT+L SAT
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKK 444
Query: 391 IEQLASQLLHNPVRIITGEKNLPCANVRQII-LWVEDPAK----KKKLFEILNDKKLFKP 445
IE+LA +L +P+R++ G+ +V QI+ + P+K ++L E +
Sbjct: 445 IEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGS---- 500
Query: 446 PVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVL 505
VL+FV K A+ L+ + K G +H + Q ER ++ + D V+V+T V
Sbjct: 501 -VLLFVTKKANAEELANNL-KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVA 558
Query: 506 GRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVK 565
RGLD+ S++ V+N+D+ +D + H+IGR GR G+ G A T + D+ + ++
Sbjct: 559 ARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLE 618
Query: 566 PTGSILPPQLLNSPYLHDQKRKEQQKDKQTQNDLVTGANL 605
+ +LL+ + RK + K + + + G L
Sbjct: 619 GANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGL 658
>gi|209862869 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3
[Homo sapiens]
Length = 724
Score = 238 bits (606), Expect = 2e-62
Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 24/427 (5%)
Query: 141 EKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTR 200
E E S P+ P P + ++ + +N D+ + + + V G +
Sbjct: 232 EGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINF--DKYDTILVE----VSGHDAPP 285
Query: 201 PIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP 260
I+ FE +L + LN+N+ K+GY TP+Q IP+ L GRD++A A TGSGKTAAFLLP
Sbjct: 286 AILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLP 345
Query: 261 VIMRALFESKT---------PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLP 311
++ + + T P +I+ PTREL QI +A++ G ++ V++ GG
Sbjct: 346 ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC-VRAVVIYGGTQ 404
Query: 312 LPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDIL 371
L + ++ Q ++ ATPGRL+DII + + L +K +V+DEAD ML MGF ++ ++
Sbjct: 405 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 464
Query: 372 E--NIPN--DCQTILVSATIPTSIEQLASQLLH-NPVRIITGEKNLPCANVRQIILWVED 426
+P+ QT++ SAT P I++LA++ L N + + G+ C +V+Q +L V
Sbjct: 465 SCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ 524
Query: 427 PAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKN 486
+K++KL EIL + + +VFV+ K AD ++ + + + + SIH ++ Q ER+
Sbjct: 525 FSKREKLVEIL--RNIGDERTMVFVETKKKADFIATFLCQ-EKISTTSIHGDREQREREQ 581
Query: 487 ILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAI 546
L G V+V+T V RGLD+ +V+ V+NFD+PS++DEYVH+IGR GR G G AI
Sbjct: 582 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641
Query: 547 TFINNNS 553
+F + S
Sbjct: 642 SFFDLES 648
>gi|13518015 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1
[Homo sapiens]
Length = 724
Score = 238 bits (606), Expect = 2e-62
Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 24/427 (5%)
Query: 141 EKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTR 200
E E S P+ P P + ++ + +N D+ + + + V G +
Sbjct: 232 EGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINF--DKYDTILVE----VSGHDAPP 285
Query: 201 PIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP 260
I+ FE +L + LN+N+ K+GY TP+Q IP+ L GRD++A A TGSGKTAAFLLP
Sbjct: 286 AILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLP 345
Query: 261 VIMRALFESKT---------PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLP 311
++ + + T P +I+ PTREL QI +A++ G ++ V++ GG
Sbjct: 346 ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC-VRAVVIYGGTQ 404
Query: 312 LPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDIL 371
L + ++ Q ++ ATPGRL+DII + + L +K +V+DEAD ML MGF ++ ++
Sbjct: 405 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 464
Query: 372 E--NIPN--DCQTILVSATIPTSIEQLASQLLH-NPVRIITGEKNLPCANVRQIILWVED 426
+P+ QT++ SAT P I++LA++ L N + + G+ C +V+Q +L V
Sbjct: 465 SCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ 524
Query: 427 PAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKN 486
+K++KL EIL + + +VFV+ K AD ++ + + + + SIH ++ Q ER+
Sbjct: 525 FSKREKLVEIL--RNIGDERTMVFVETKKKADFIATFLCQ-EKISTTSIHGDREQREREQ 581
Query: 487 ILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAI 546
L G V+V+T V RGLD+ +V+ V+NFD+PS++DEYVH+IGR GR G G AI
Sbjct: 582 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 641
Query: 547 TFINNNS 553
+F + S
Sbjct: 642 SFFDLES 648
>gi|216548263 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2
[Homo sapiens]
Length = 690
Score = 238 bits (606), Expect = 2e-62
Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 24/427 (5%)
Query: 141 EKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVTR 200
E E S P+ P P + ++ + +N D+ + + + V G +
Sbjct: 198 EGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINF--DKYDTILVE----VSGHDAPP 251
Query: 201 PIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP 260
I+ FE +L + LN+N+ K+GY TP+Q IP+ L GRD++A A TGSGKTAAFLLP
Sbjct: 252 AILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLP 311
Query: 261 VIMRALFESKT---------PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLP 311
++ + + T P +I+ PTREL QI +A++ G ++ V++ GG
Sbjct: 312 ILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTC-VRAVVIYGGTQ 370
Query: 312 LPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDIL 371
L + ++ Q ++ ATPGRL+DII + + L +K +V+DEAD ML MGF ++ ++
Sbjct: 371 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLI 430
Query: 372 E--NIPN--DCQTILVSATIPTSIEQLASQLLH-NPVRIITGEKNLPCANVRQIILWVED 426
+P+ QT++ SAT P I++LA++ L N + + G+ C +V+Q +L V
Sbjct: 431 SCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQ 490
Query: 427 PAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKN 486
+K++KL EIL + + +VFV+ K AD ++ + + + + SIH ++ Q ER+
Sbjct: 491 FSKREKLVEIL--RNIGDERTMVFVETKKKADFIATFLCQ-EKISTTSIHGDREQREREQ 547
Query: 487 ILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAI 546
L G V+V+T V RGLD+ +V+ V+NFD+PS++DEYVH+IGR GR G G AI
Sbjct: 548 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAI 607
Query: 547 TFINNNS 553
+F + S
Sbjct: 608 SFFDLES 614
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 232 bits (591), Expect = 9e-61
Identities = 144/417 (34%), Positives = 230/417 (55%), Gaps = 25/417 (5%)
Query: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
I F + E++ N++ + Y PTP+Q IP+ RD++A A TGSGKTAAFLLP+
Sbjct: 179 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 238
Query: 262 I-----------MRALFES-------KTPSALILTPTRELAIQIERQAKELMSGLPRMKT 303
+ +RA+ E+ + P +L+L PTRELA+QI +A++ S R++
Sbjct: 239 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRP 297
Query: 304 VLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGF 363
++ GG + Q+ L++ +++ATPGRL+D++++ + L K +V+DEAD ML MGF
Sbjct: 298 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 357
Query: 364 QQQVLDILENI---PNDCQ-TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419
+ Q+ I+E P + T++ SAT P I+ LA L + + G N+ Q
Sbjct: 358 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 417
Query: 420 IILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEK 479
++WVE+ K+ L ++LN LVFV+ K GAD L + + G SIH ++
Sbjct: 418 KVVWVEESDKRSFLLDLLNATGK-DSLTLVFVETKKGADSLEDFLYH-EGYACTSIHGDR 475
Query: 480 SQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRL 539
SQ +R+ L G ++V+T V RGLD+ +V+ V+NFD+PS ++EYVH+IGR GR+
Sbjct: 476 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 535
Query: 540 GQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQ 596
G G A +F N + + D+ + +P L N Y H K + + K ++
Sbjct: 536 GNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRGRSKSSR 592
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 230 bits (587), Expect = 3e-60
Identities = 145/417 (34%), Positives = 229/417 (54%), Gaps = 25/417 (5%)
Query: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
I +F + E++ N++ + Y PTP+Q IP+ RD++A A TGSGKTAAFLLP+
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 236
Query: 262 I-----------MRALFES-------KTPSALILTPTRELAIQIERQAKELMSGLPRMKT 303
+ ++A+ E+ + P +L+L PTRELA+QI +A++ S R++
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRP 295
Query: 304 VLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGF 363
++ GG + Q+ L++ +++ATPGRL+D++++ + L K +V+DEAD ML MGF
Sbjct: 296 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 355
Query: 364 QQQVLDILENI---PNDCQ-TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419
+ Q+ I+E P + T++ SAT P I+ LA L + + G N+ Q
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415
Query: 420 IILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEK 479
++WVED K+ L +IL LVFV+ K GAD L + + G SIH ++
Sbjct: 416 KVVWVEDLDKRSFLLDILGATGS-DSLTLVFVETKKGADSLEDFLYH-EGYACTSIHGDR 473
Query: 480 SQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRL 539
SQ +R+ L G ++V+T V RGLD+ +VR V+NFD+PS ++EYVH+IGR GR+
Sbjct: 474 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRV 533
Query: 540 GQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQ 596
G G A +F N + + D+ + +P L N Y H K + + K +
Sbjct: 534 GNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSNR 590
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 230 bits (587), Expect = 3e-60
Identities = 145/417 (34%), Positives = 229/417 (54%), Gaps = 25/417 (5%)
Query: 202 IIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPV 261
I +F + E++ N++ + Y PTP+Q IP+ RD++A A TGSGKTAAFLLP+
Sbjct: 177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAAFLLPI 236
Query: 262 I-----------MRALFES-------KTPSALILTPTRELAIQIERQAKELMSGLPRMKT 303
+ ++A+ E+ + P +L+L PTRELA+QI +A++ S R++
Sbjct: 237 LSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRVRP 295
Query: 304 VLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGF 363
++ GG + Q+ L++ +++ATPGRL+D++++ + L K +V+DEAD ML MGF
Sbjct: 296 CVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGF 355
Query: 364 QQQVLDILENI---PNDCQ-TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQ 419
+ Q+ I+E P + T++ SAT P I+ LA L + + G N+ Q
Sbjct: 356 EPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQ 415
Query: 420 IILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEK 479
++WVED K+ L +IL LVFV+ K GAD L + + G SIH ++
Sbjct: 416 KVVWVEDLDKRSFLLDILGATGS-DSLTLVFVETKKGADSLEDFLYH-EGYACTSIHGDR 473
Query: 480 SQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRL 539
SQ +R+ L G ++V+T V RGLD+ +VR V+NFD+PS ++EYVH+IGR GR+
Sbjct: 474 SQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRV 533
Query: 540 GQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLNSPYLHDQKRKEQQKDKQTQ 596
G G A +F N + + D+ + +P L N Y H K + + K +
Sbjct: 534 GNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSRGRSKSNR 590
>gi|222352149 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Homo
sapiens]
Length = 648
Score = 220 bits (561), Expect = 3e-57
Identities = 141/398 (35%), Positives = 225/398 (56%), Gaps = 19/398 (4%)
Query: 211 PEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESK 270
PEV+ N+KK+G++ PTPIQ Q P+ L G D++ A TG+GKT +L+P + + +
Sbjct: 251 PEVME-NIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPS 309
Query: 271 T------PSALILTPTRELAIQIERQA-KELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
P L+LTPTRELA+Q+E + K GL ++V + GG Q+ L++ V
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGL---RSVCVYGGGNRDEQIEELKKGV 366
Query: 324 KVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILV 383
+IIATPGRL D+ + V L + +V+DEAD ML MGF+ Q++ IL ++ D QT++
Sbjct: 367 DIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMT 426
Query: 384 SATIPTSIEQLASQLLHNPVRIITGEKNL-PCANVRQIILWVEDPAKKKKLFEILNDKKL 442
SAT P S+ +LA L P+ + G +L ++V+Q I+ + K + L
Sbjct: 427 SATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMS- 485
Query: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSI-SIHSEKSQIERKNILKGLLEGDYEVVVS 501
V+VFV K AD LS + I G S+ S+H ++ Q +R+ L+ G ++++
Sbjct: 486 STDKVIVFVSRKAVADHLSSDL--ILGNISVESLHGDREQRDREKALENFKTGKVRILIA 543
Query: 502 TGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIA 561
T + RGLD+ V V NFD P +++EYVH+IGR GR G+ G +IT + N R+ ++
Sbjct: 544 TDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELI 603
Query: 562 KRVKPTGSILPPQLLNSP---YLHDQKRKEQQKDKQTQ 596
++ +P +L++ H QKR+ ++K ++ Q
Sbjct: 604 NILERANQSIPEELVSMAERFKAHQQKREMERKMERPQ 641
>gi|38569503 ATP-dependent RNA helicase ROK1 isoform b [Homo
sapiens]
Length = 491
Score = 217 bits (553), Expect = 2e-56
Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 40/473 (8%)
Query: 176 NLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLN----HNLKKSGYEVPTPIQM 231
NL++++I L+ + I VQG ++ PI F+ +N N+ +G+++PTPIQM
Sbjct: 26 NLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQM 85
Query: 232 QMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFES-KTPSALILTPTRELAIQIERQ 290
Q IPV L GR++LASA TGSGKT AF +P++M+ + K ALI++PTRELA QI R+
Sbjct: 86 QAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRE 145
Query: 291 AKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQS--SVELCGVK 348
++ G ++ + + + +++ TP RL+ ++KQ ++L V+
Sbjct: 146 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 205
Query: 349 IVVVDEADTML---KMGFQQQVLDI-LENIPNDCQTILVSATIPTSIEQLASQLLHNPVR 404
+VVDE+D + K GF+ Q+ I L + + + SAT +EQ L N +
Sbjct: 206 WLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 265
Query: 405 IITGEKNLPCANVRQIILWV-EDPAKKKKLFEILNDKKLFKPPVLVFVDC-KLGADLLSE 462
+ G +N V Q +L+V + K + E++ KK F PPVLVFV + +L E
Sbjct: 266 VSIGARNSAVETVEQELLFVGSETGKLLAMRELV--KKGFNPPVLVFVQSIERAKELFHE 323
Query: 463 AVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 522
+ + G+ IH+E++Q +R N + G V++ T +L RG+D V LV+N+D
Sbjct: 324 LIYE--GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDF 381
Query: 523 PSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLN-SPYL 581
P+S EY+H+IGR GR G G AITF + K L +A ++ G +P + L
Sbjct: 382 PTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLL 441
Query: 582 HDQKRK-------------------EQQKDKQTQNDLVTGANLMDIIRKHDKS 615
QK+K E+ KDKQ + VTG N + DKS
Sbjct: 442 SKQKKKMIKKPLERESISTTPKCFLEKAKDKQKK---VTGQNSKKKVALEDKS 491
>gi|38569505 ATP-dependent RNA helicase ROK1 isoform a [Homo
sapiens]
Length = 599
Score = 217 bits (553), Expect = 2e-56
Identities = 157/473 (33%), Positives = 245/473 (51%), Gaps = 40/473 (8%)
Query: 176 NLQEDQIENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLN----HNLKKSGYEVPTPIQM 231
NL++++I L+ + I VQG ++ PI F+ +N N+ +G+++PTPIQM
Sbjct: 134 NLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQM 193
Query: 232 QMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFES-KTPSALILTPTRELAIQIERQ 290
Q IPV L GR++LASA TGSGKT AF +P++M+ + K ALI++PTRELA QI R+
Sbjct: 194 QAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRE 253
Query: 291 AKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQS--SVELCGVK 348
++ G ++ + + + +++ TP RL+ ++KQ ++L V+
Sbjct: 254 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 313
Query: 349 IVVVDEADTML---KMGFQQQVLDI-LENIPNDCQTILVSATIPTSIEQLASQLLHNPVR 404
+VVDE+D + K GF+ Q+ I L + + + SAT +EQ L N +
Sbjct: 314 WLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 373
Query: 405 IITGEKNLPCANVRQIILWV-EDPAKKKKLFEILNDKKLFKPPVLVFVDC-KLGADLLSE 462
+ G +N V Q +L+V + K + E++ KK F PPVLVFV + +L E
Sbjct: 374 VSIGARNSAVETVEQELLFVGSETGKLLAMRELV--KKGFNPPVLVFVQSIERAKELFHE 431
Query: 463 AVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDM 522
+ + G+ IH+E++Q +R N + G V++ T +L RG+D V LV+N+D
Sbjct: 432 LIYE--GINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDF 489
Query: 523 PSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQLLN-SPYL 581
P+S EY+H+IGR GR G G AITF + K L +A ++ G +P + L
Sbjct: 490 PTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLL 549
Query: 582 HDQKRK-------------------EQQKDKQTQNDLVTGANLMDIIRKHDKS 615
QK+K E+ KDKQ + VTG N + DKS
Sbjct: 550 SKQKKKMIKKPLERESISTTPKCFLEKAKDKQKK---VTGQNSKKKVALEDKS 599
>gi|7661920 eukaryotic translation initiation factor 4A, isoform 3
[Homo sapiens]
Length = 411
Score = 208 bits (530), Expect = 1e-53
Identities = 119/358 (33%), Positives = 205/358 (57%), Gaps = 7/358 (1%)
Query: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
F+ L E L + G+E P+ IQ + I + GRD++A + +G+GKTA F + V+
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 265 ALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
+ + ALIL PTRELA+QI++ L + ++ +GG + + +L
Sbjct: 100 LDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQH 158
Query: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVS 384
V+ TPGR+ D+I++ S+ +K++V+DEAD ML GF++Q+ D+ +P Q +L+S
Sbjct: 159 VVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 218
Query: 385 ATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND--KKL 442
AT+P I ++ ++ + +P+RI+ L ++Q + VE +++ F+ L D L
Sbjct: 219 ATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE---REEWKFDTLCDLYDTL 275
Query: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
++F + K D L+E +++ S S+H + Q ER++I+K G V++ST
Sbjct: 276 TITQAVIFCNTKRKVDWLTEKMREANFTVS-SMHGDMPQKERESIMKEFRSGASRVLIST 334
Query: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDI 560
V RGLD+ V L++N+D+P++ + Y+H+IGR GR G+ G AI F+ N+ R+ DI
Sbjct: 335 DVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI 392
>gi|55749865 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 [Homo
sapiens]
Length = 631
Score = 204 bits (520), Expect = 1e-52
Identities = 124/393 (31%), Positives = 213/393 (54%), Gaps = 13/393 (3%)
Query: 211 PEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR------ 264
P++L ++ + G PTPIQ Q P+ L G D++ A TG+GKT ++L+P +
Sbjct: 231 PDLLK-SIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 289
Query: 265 ALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK 324
+ + P L+LTPTRELA+ +E + + +K++ + GG Q+ + + V
Sbjct: 290 SREQRNGPGMLVLTPTRELALHVEAECSKY--SYKGLKSICIYGGRNRNGQIEDISKGVD 347
Query: 325 VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVS 384
+IIATPGRL D+ +SV L + +V+DEAD ML M F+ Q+ IL ++ D QT++ S
Sbjct: 348 IIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 407
Query: 385 ATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFK 444
AT P ++ QLA L +P+ + G NL N + + V +K+ L + +
Sbjct: 408 ATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMSPN 467
Query: 445 PPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGV 504
V++FV K AD LS I G+ + S+H Q +++ ++ G+ +++++T +
Sbjct: 468 DKVIMFVSQKHIADDLSSDF-NIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDI 526
Query: 505 LGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDIAKRV 564
+ RGLDL V V N+D P ++D YVH++G +GR G+ GT++T I ++ ++ K +
Sbjct: 527 VSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKIL 586
Query: 565 KPTGSILPPQLL---NSPYLHDQKRKEQQKDKQ 594
+P L+ L+ QKR + + ++
Sbjct: 587 DRANQSVPEDLVVMAEQYKLNQQKRHRETRSRK 619
>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
[Homo sapiens]
Length = 455
Score = 204 bits (519), Expect = 2e-52
Identities = 127/368 (34%), Positives = 203/368 (55%), Gaps = 11/368 (2%)
Query: 197 EVTRPIID------FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTG 250
E ++PI++ F+ + +VL + G+ PT IQ++ IP+ L GRDI+ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 251 SGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGL 310
SGKT AF LP++ L + AL+LTPTRELA QI Q + L S + +++ ++VGG+
Sbjct: 72 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGI 130
Query: 311 PLPPQLYRLQQHVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLD 369
Q L + +IIATPGRL+D ++ + L +K +V+DEAD +L M F+ +V
Sbjct: 131 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 190
Query: 370 ILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAK 429
IL+ IP D +T L SAT+ +++L L NPV+ K ++Q +++ K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFK 250
Query: 430 KKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILK 489
L ILN+ L ++F + ++ + G +I +H + SQ +R L
Sbjct: 251 DTYLVYILNE--LAGNSFMIFCSTCNNTQRTALLLRNL-GFTAIPLHGQMSQSKRLGSLN 307
Query: 490 GLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFI 549
++++T V RGLD+ V +VVNFD+P+ +Y+H++GR R G++G AITF+
Sbjct: 308 KFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 367
Query: 550 NNNSKRLF 557
LF
Sbjct: 368 TQYDVELF 375
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 204 bits (518), Expect = 3e-52
Identities = 137/455 (30%), Positives = 231/455 (50%), Gaps = 15/455 (3%)
Query: 132 KAKHLLQVKEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLK----- 186
K K + E +E+ L + SE E+ Y + + ++++ K
Sbjct: 142 KEKEAKEGSEPKEQEDLQENDEEGSEDEAS-ETDYSSADENILTKADTLKVKDRKKKKKK 200
Query: 187 -QQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILA 245
Q+ G + + F+ +L L + G++ PTPIQ IPVGLLG+DI A
Sbjct: 201 GQEAGGFFEDASQYDENLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICA 260
Query: 246 SADTGSGKTAAFLLPVIMRALFESK---TPSALILTPTRELAIQIERQAKELMSGLPRMK 302
A TG+GKTAAF LPV+ R +++ + L+L PTREL IQ+ ++L +
Sbjct: 261 CAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQ-FCNIT 319
Query: 303 TVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKM 361
T L VGGL + Q L+ ++IATPGRL+D + S L ++++++DEAD ML
Sbjct: 320 TCLAVGGLDVKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDE 379
Query: 362 GFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQII 421
F++Q+ +I+ + QT+L SAT+ ++ LAS L NPVRI +RQ
Sbjct: 380 YFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEF 439
Query: 422 LWVEDPAK-KKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKS 480
+ + + ++ + F V++F K A + + + GL+ +H S
Sbjct: 440 IRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRM-HILLGLMGLQVGELHGNLS 498
Query: 481 QIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLG 540
Q +R L+ + +++V+T V RGLD+ V+ V+NF MP+++ YVH++GR R G
Sbjct: 499 QTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAG 558
Query: 541 QNGTAITFINNNSKRLFWDIAKRVK-PTGSILPPQ 574
+ G +++ + + +++ +I K K P + + PQ
Sbjct: 559 RAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQ 593
>gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo
sapiens]
Length = 483
Score = 196 bits (499), Expect = 4e-50
Identities = 121/381 (31%), Positives = 201/381 (52%), Gaps = 8/381 (2%)
Query: 204 DFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIM 263
+FE L L + + G+E P+PIQ + IP+ L GRDILA A G+GK+ A+L+P++
Sbjct: 97 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156
Query: 264 RALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
R + A+++ PTRELA+Q+ + ++ + K + GG L + RL V
Sbjct: 157 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 216
Query: 324 KVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILV 383
V+IATPGR+LD+IK+ ++ V+++V+DEAD +L F Q + DI+ +P + Q +L
Sbjct: 217 HVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLY 276
Query: 384 SATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLF 443
SAT P S+++ + L P I E+ L V Q +V + K L + + ++
Sbjct: 277 SATFPLSVQKFMNSHLQKPYEINLMEE-LTLKGVTQYYAYVTERQKVHCLNTLFSRLQIN 335
Query: 444 KPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTG 503
+ ++F + +LL++ + ++ G IH++ Q R + G +V T
Sbjct: 336 QS--IIFCNSSQRVELLAKKISQL-GYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTD 392
Query: 504 VLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINN----NSKRLFWD 559
+ RG+D+ +V +V+NFD P + Y+H+IGR GR G G AI I N K +
Sbjct: 393 LFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQ 452
Query: 560 IAKRVKPTGSILPPQLLNSPY 580
+ +KP S + L + Y
Sbjct: 453 LGTEIKPIPSNIDKSLYVAEY 473
>gi|83700235 eukaryotic translation initiation factor 4A2 [Homo
sapiens]
Length = 407
Score = 196 bits (499), Expect = 4e-50
Identities = 113/372 (30%), Positives = 205/372 (55%), Gaps = 8/372 (2%)
Query: 204 DFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIM 263
+F+ +L E L + G+E P+ IQ + I + G D++A A +G+GKTA F + ++
Sbjct: 34 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 93
Query: 264 RALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV 323
+ E K AL+L PTRELA QI++ L + +GG + ++ +LQ
Sbjct: 94 QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHAC-IGGTNVRNEMQKLQAEA 152
Query: 324 K-VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382
+++ TPGR+ D++ + + +K+ V+DEAD ML GF+ Q+ +I + + Q +L
Sbjct: 153 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVL 212
Query: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND--K 440
+SAT+PT + ++ + + +P+RI+ ++ L ++Q + VE +++ + L D +
Sbjct: 213 LSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVE---REEWKLDTLCDLYE 269
Query: 441 KLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVV 500
L ++F++ + D L+E + S ++H + Q ER I++ G V++
Sbjct: 270 TLTITQAVIFLNTRRKVDWLTEKMHARDFTVS-ALHGDMDQKERDVIMREFRSGSSRVLI 328
Query: 501 STGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLFWDI 560
+T +L RG+D+ V LV+N+D+P++ + Y+H+IGR GR G+ G AI F+ KR+ DI
Sbjct: 329 TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDI 388
Query: 561 AKRVKPTGSILP 572
T +P
Sbjct: 389 ETFYNTTVEEMP 400
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 196 bits (497), Expect = 7e-50
Identities = 113/363 (31%), Positives = 204/363 (56%), Gaps = 9/363 (2%)
Query: 202 IID-FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLP 260
I+D F+ +L E L + G+E P+ IQ + I + G D++A A +G+GKTA F +
Sbjct: 30 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 89
Query: 261 VIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQ 320
++ + + K AL+L PTRELA QI++ L + +GG + ++ +LQ
Sbjct: 90 ILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA-SCHACIGGTNVRAEVQKLQ 148
Query: 321 QHVK-VIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQ 379
+I+ TPGR+ D++ + + +K+ V+DEAD ML GF+ Q+ DI + + ++ Q
Sbjct: 149 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 208
Query: 380 TILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILND 439
+L+SAT+P+ + ++ + + +P+RI+ ++ L +RQ + VE +++ + L D
Sbjct: 209 VVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE---REEWKLDTLCD 265
Query: 440 --KKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYE 497
+ L ++F++ + D L+E + S ++H + Q ER I++ G
Sbjct: 266 LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVS-AMHGDMDQKERDVIMREFRSGSSR 324
Query: 498 VVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINNNSKRLF 557
V+++T +L RG+D+ V LV+N+D+P++ + Y+H+IGR GR G+ G AI + KR
Sbjct: 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTL 384
Query: 558 WDI 560
DI
Sbjct: 385 RDI 387
>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
[Homo sapiens]
Length = 881
Score = 188 bits (477), Expect = 1e-47
Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 4/347 (1%)
Query: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
F+ L + + K GY+VPTPIQ + IPV L G+D++A A TGSGKTA FLLP+ R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 265 ALFESKTPSA--LILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322
S A LIL+PTRELA+Q + KEL +KT L++GG + Q L ++
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTLKFTKEL-GKFTGLKTALILGGDRMEDQFAALHEN 216
Query: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382
+IIATPGRL+ + + S++L V+ VV DEAD + +MGF +Q+ +I+ +P QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276
Query: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKL 442
SAT+P + + A L PV I ++ V + K L +L++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVR 336
Query: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
+ +VFV K A+ L+E + + I+S RK L G ++ T
Sbjct: 337 PQDQTVVFVATKHHAEYLTELL-TTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395
Query: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFI 549
+ RGLD+ + V+N+ P+ ++H++GRV R G++GTA + +
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV 442
>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
[Homo sapiens]
Length = 882
Score = 188 bits (477), Expect = 1e-47
Identities = 122/347 (35%), Positives = 187/347 (53%), Gaps = 4/347 (1%)
Query: 205 FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMR 264
F+ L + + K GY+VPTPIQ + IPV L G+D++A A TGSGKTA FLLP+ R
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 265 ALFESKTPSA--LILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQH 322
S A LIL+PTRELA+Q + KEL +KT L++GG + Q L ++
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTLKFTKEL-GKFTGLKTALILGGDRMEDQFAALHEN 216
Query: 323 VKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTIL 382
+IIATPGRL+ + + S++L V+ VV DEAD + +MGF +Q+ +I+ +P QT+L
Sbjct: 217 PDIIIATPGRLVHVAVEMSLKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQTVL 276
Query: 383 VSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKL 442
SAT+P + + A L PV I ++ V + K L +L++
Sbjct: 277 FSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNVVR 336
Query: 443 FKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVST 502
+ +VFV K A+ L+E + + I+S RK L G ++ T
Sbjct: 337 PQDQTVVFVATKHHAEYLTELL-TTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIVT 395
Query: 503 GVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFI 549
+ RGLD+ + V+N+ P+ ++H++GRV R G++GTA + +
Sbjct: 396 DLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLV 442
>gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo
sapiens]
Length = 427
Score = 181 bits (459), Expect = 2e-45
Identities = 114/383 (29%), Positives = 206/383 (53%), Gaps = 16/383 (4%)
Query: 211 PEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESK 270
PE+L + G+E P+ +Q + IP +LG D+L A +G GKTA F+L + + +
Sbjct: 53 PELLRA-IVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNG 111
Query: 271 TPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHVK-VIIAT 329
+ L++ TRELA QI ++ + +P +K + GGL + L+++ V++ T
Sbjct: 112 QVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGT 171
Query: 330 PGRLLDIIKQSSVELCGVKIVVVDEADTMLK-MGFQQQVLDILENIPNDCQTILVSATIP 388
PGR+L +++ S L VK V+DE D ML+ + ++ V +I P++ Q ++ SAT+
Sbjct: 172 PGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLS 231
Query: 389 TSIEQLASQLLHNPVRI-ITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPV 447
I + + + +P+ + + E L ++Q + ++D K +KLF++L+ + + V
Sbjct: 232 KDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ--V 289
Query: 448 LVFVD----CKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTG 503
++FV C A LL E +I+IH +Q ER + + + ++V+T
Sbjct: 290 IIFVKSVQRCMALAQLLVEQ-----NFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATN 344
Query: 504 VLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINN-NSKRLFWDIAK 562
+ GRG+D+ V +V N+DMP D Y+H++ R GR G G AITF+++ N ++ D+
Sbjct: 345 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 404
Query: 563 RVKPTGSILPPQLLNSPYLHDQK 585
R + + LP ++ S Y+ +
Sbjct: 405 RFEVNVAELPEEIDISTYIEQSR 427
>gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
[Homo sapiens]
Length = 406
Score = 181 bits (458), Expect = 2e-45
Identities = 119/368 (32%), Positives = 188/368 (51%), Gaps = 60/368 (16%)
Query: 197 EVTRPIID------FEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTG 250
E ++PI++ F+ + +VL + G+ PT IQ++ IP+ L GRDI+ A+TG
Sbjct: 12 EASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETG 71
Query: 251 SGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGL 310
SGKT AF LP++ L + AL+LTPTRELA QI Q + L S + +++ ++VGG+
Sbjct: 72 SGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGI 130
Query: 311 PLPPQLYRLQQHVKVIIATPGRLLDIIKQS-SVELCGVKIVVVDEADTMLKMGFQQQVLD 369
Q L + +IIATPGRL+D ++ + L +K +V+DEAD +L M F+ +V
Sbjct: 131 DSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDK 190
Query: 370 ILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAK 429
IL+ IP D +T L SAT+ +++L L NPV+ K ++Q +++ K
Sbjct: 191 ILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFK 250
Query: 430 KKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILK 489
K+L + K + + ++IL
Sbjct: 251 SKRLGSL-----------------------------------------NKFKAKARSIL- 268
Query: 490 GLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFI 549
++T V RGLD+ V +VVNFD+P+ +Y+H++GR R G++G AITF+
Sbjct: 269 ----------LATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFV 318
Query: 550 NNNSKRLF 557
LF
Sbjct: 319 TQYDVELF 326
>gi|4758112 HLA-B associated transcript 1 [Homo sapiens]
Length = 428
Score = 179 bits (455), Expect = 5e-45
Identities = 120/426 (28%), Positives = 218/426 (51%), Gaps = 21/426 (4%)
Query: 174 ILNLQEDQIENLKQQLGIL------VQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPT 227
+L+ ++D++E G V+G V+ F L L + G+E P+
Sbjct: 10 LLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPS 69
Query: 228 PIQMQMIPVGLLGRDILASADTGSGKTAAFLLPVIMRALFESKTPSALILTPTRELAIQI 287
+Q + IP +LG D+L A +G GKTA F+L + + + S L++ TRELA QI
Sbjct: 70 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 129
Query: 288 ERQAKELMSGLPRMKTVLLVGGLPLPPQLYRLQQHV-KVIIATPGRLLDIIKQSSVELCG 346
++ + +P +K + GGL + L+++ +++ TPGR+L + + S+ L
Sbjct: 130 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 189
Query: 347 VKIVVVDEADTML-KMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRI 405
+K ++DE D ML ++ ++ V +I P++ Q ++ SAT+ I + + + +P+ I
Sbjct: 190 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 249
Query: 406 -ITGEKNLPCANVRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVD----CKLGADLL 460
+ E L ++Q + ++D K +KLF++L+ + + V++FV C A LL
Sbjct: 250 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ--VVIFVKSVQRCIALAQLL 307
Query: 461 SEAVQKITGLKSISIHSEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNF 520
E +I+IH Q ER + + + ++V+T + GRG+D+ V + N+
Sbjct: 308 VE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY 362
Query: 521 DMPSSMDEYVHQIGRVGRLGQNGTAITFINN-NSKRLFWDIAKRVKPTGSILPPQLLNSP 579
DMP D Y+H++ R GR G G AITF+++ N ++ D+ R + S LP ++ S
Sbjct: 363 DMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 422
Query: 580 YLHDQK 585
Y+ +
Sbjct: 423 YIEQTR 428
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,417,712
Number of Sequences: 37866
Number of extensions: 1160503
Number of successful extensions: 3959
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3680
Number of HSP's gapped (non-prelim): 128
length of query: 619
length of database: 18,247,518
effective HSP length: 108
effective length of query: 511
effective length of database: 14,157,990
effective search space: 7234732890
effective search space used: 7234732890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.