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Search of human proteins with 187936958
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
[Homo sapiens]
(507 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ... 1030 0.0
gi|156627575 UDP-N-acetylglucosamine pyrophosphorylase 1 [Homo s... 583 e-166
gi|48255968 UDP-glucose pyrophosphorylase 2 isoform b [Homo sapi... 49 1e-05
gi|48255966 UDP-glucose pyrophosphorylase 2 isoform a [Homo sapi... 49 1e-05
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 36 0.094
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 36 0.094
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 35 0.16
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 32 1.4
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 32 1.4
gi|29171705 melanoma antigen family D, 2 [Homo sapiens] 32 1.4
gi|19387846 melanoma antigen family D, 2 [Homo sapiens] 32 1.4
gi|41350320 melanoma antigen family D, 2 [Homo sapiens] 32 1.4
gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3 c... 31 2.3
gi|25952087 potassium voltage-gated channel, shaker-related subf... 31 2.3
gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [... 31 2.3
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 31 3.0
gi|157785645 SPEG complex locus [Homo sapiens] 31 3.0
gi|144953903 developmental pluripotency associated 4 [Homo sapiens] 31 3.0
gi|41352718 deltex homolog 1 [Homo sapiens] 31 3.0
gi|59853099 dynamin 1 isoform 1 [Homo sapiens] 30 4.0
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 30 5.2
gi|239047414 slingshot 1 isoform 1 [Homo sapiens] 30 6.8
gi|134304838 eukaryotic translation initiation factor 2-alpha ki... 30 6.8
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 6.8
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 6.8
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 30 6.8
gi|239756179 PREDICTED: hypothetical protein [Homo sapiens] 29 8.8
gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo ... 29 8.8
>gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
[Homo sapiens]
Length = 507
Score = 1030 bits (2662), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRAAEACARP 60
MASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRAAEACARP
Sbjct: 1 MASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRAAEACARP 60
Query: 61 HGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLG 120
HGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLG
Sbjct: 61 HGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLG 120
Query: 121 VTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEF 180
VTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEF
Sbjct: 121 VTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEF 180
Query: 181 FREHNFFHLDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILE 240
FREHNFFHLDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILE
Sbjct: 181 FREHNFFHLDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILE 240
Query: 241 DMERRGVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDG 300
DMERRGVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDG
Sbjct: 241 DMERRGVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDG 300
Query: 301 VPQVVEYSEISPETAQLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKK 360
VPQVVEYSEISPETAQLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKK
Sbjct: 301 VPQVVEYSEISPETAQLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKK 360
Query: 361 VPYVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSP 420
VPYVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSP
Sbjct: 361 VPYVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSP 420
Query: 421 RTARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLE 480
RTARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLE
Sbjct: 421 RTARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLE 480
Query: 481 VYLQGREFQSPLILDEDQAREPQLQES 507
VYLQGREFQSPLILDEDQAREPQLQES
Sbjct: 481 VYLQGREFQSPLILDEDQAREPQLQES 507
>gi|156627575 UDP-N-acetylglucosamine pyrophosphorylase 1 [Homo
sapiens]
Length = 505
Score = 583 bits (1503), Expect = e-166
Identities = 293/497 (58%), Positives = 369/497 (74%), Gaps = 3/497 (0%)
Query: 6 DVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRAAEACARPHGPPP 65
D++ L +AGQEHLLRFW EL + L AEL + E L ++A E +
Sbjct: 5 DLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQS-SHQK 63
Query: 66 DLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPK 125
++ AR+ P+P E +G A+R D + + WE EG QIS NKVAVLLLAGGQGTRLGV YPK
Sbjct: 64 NVDARMEPVPREVLGSATR-DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPK 122
Query: 126 GMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCTVPWYVMTSEFTLGPTAEFFREHN 185
GMY VGLPSRKTL+Q+QAERI +++Q+A + +G +C +PWY+MTS T+ T EFF +H
Sbjct: 123 GMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKEFFTKHK 182
Query: 186 FFHLDPANVVMFEQRLLPAVTFDGKVILERKDKVAMAPDGNGGLYCALEDHKILEDMERR 245
+F L NV+ F+Q +LPA++FDGK+ILE K+KV+MAPDGNGGLY AL I+EDME+R
Sbjct: 183 YFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQR 242
Query: 246 GVEFVHVYCVDNILVRLADPVFIGFCVLQGADCGAKVVEKAYPEEPVGVVCQVDGVPQVV 305
G+ +HVYCVDNILV++ADP FIGFC+ +GADCGAKVVEK P EPVGVVC+VDGV QVV
Sbjct: 243 GIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGVYQVV 302
Query: 306 EYSEISPETAQLRASDGSLLYNAGNICNHFFTRGFLKAVTREFEPLLKPHVAVKKVPYVD 365
EYSEIS TAQ R+SDG LL+NAGNI NHFFT FL+ V +EP L+ HVA KK+PYVD
Sbjct: 303 EYSEISLATAQKRSSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVD 362
Query: 366 EEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPAD-RDSPRTAR 424
+G L+KP KPNGIKMEKFVFD+F+FAK F EVLRE+EFSPLKNA+ + +D+P TAR
Sbjct: 363 TQGQLIKPDKPNGIKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTAR 422
Query: 425 QALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVYLQ 484
AL++ H+ W L AG F+D +G+ LP +P L D P CEISPL+SY+GEGLE Y+
Sbjct: 423 HALMSLHHCWVLNAGGHFIDENGSRLPAIPRLKDANDVPIQCEISPLISYAGEGLESYVA 482
Query: 485 GREFQSPLILDEDQARE 501
+EF +PLI+DE+ E
Sbjct: 483 DKEFHAPLIIDENGVHE 499
>gi|48255968 UDP-glucose pyrophosphorylase 2 isoform b [Homo
sapiens]
Length = 497
Score = 48.5 bits (114), Expect = 1e-05
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 35/246 (14%)
Query: 103 LNKVAVLLLAGGQGTRLGVTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCT 162
LNK+ V+ L GG GT +G PK + +G+ + T L ++I + +
Sbjct: 94 LNKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHLNKT------YNTD 145
Query: 163 VPWYVMTSEFTLGPTAEFFREHNFFHLDPANVVMFEQRLLPAVTFDG------KVILERK 216
VP +M S T T + +++N + + F Q P + + V +
Sbjct: 146 VPLVLMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYPRINKESLLPVAKDVSYSGE 202
Query: 217 DKVAMAPDGNGGLYCALEDHKILEDMERRGVEFVHVYCVDN--------ILVRLADPVFI 268
+ A P G+G +Y + + +L+ G E++ V +DN IL L +P
Sbjct: 203 NTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPP-- 260
Query: 269 GFCVLQGADCG--AKVVEKAYPEEPVGVVCQVDGVPQVVEYSEI-SPETAQLRASDGSLL 325
G C +V K + G + Q +G ++VE +++ + ++ +
Sbjct: 261 -----NGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKI 315
Query: 326 YNAGNI 331
+N N+
Sbjct: 316 FNTNNL 321
>gi|48255966 UDP-glucose pyrophosphorylase 2 isoform a [Homo
sapiens]
Length = 508
Score = 48.5 bits (114), Expect = 1e-05
Identities = 53/246 (21%), Positives = 100/246 (40%), Gaps = 35/246 (14%)
Query: 103 LNKVAVLLLAGGQGTRLGVTYPKGMYRVGLPSRKTLYQLQAERIRRVEQLAGERHGTRCT 162
LNK+ V+ L GG GT +G PK + +G+ + T L ++I + +
Sbjct: 105 LNKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHLNKT------YNTD 156
Query: 163 VPWYVMTSEFTLGPTAEFFREHNFFHLDPANVVMFEQRLLPAVTFDG------KVILERK 216
VP +M S T T + +++N + + F Q P + + V +
Sbjct: 157 VPLVLMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYPRINKESLLPVAKDVSYSGE 213
Query: 217 DKVAMAPDGNGGLYCALEDHKILEDMERRGVEFVHVYCVDN--------ILVRLADPVFI 268
+ A P G+G +Y + + +L+ G E++ V +DN IL L +P
Sbjct: 214 NTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGATVDLYILNHLMNPP-- 271
Query: 269 GFCVLQGADCG--AKVVEKAYPEEPVGVVCQVDGVPQVVEYSEI-SPETAQLRASDGSLL 325
G C +V K + G + Q +G ++VE +++ + ++ +
Sbjct: 272 -----NGKRCEFVMEVTNKTRADVKGGTLTQYEGKLRLVEIAQVPKAHVDEFKSVSKFKI 326
Query: 326 YNAGNI 331
+N N+
Sbjct: 327 FNTNNL 332
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 35.8 bits (81), Expect = 0.094
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 69 ARLRPLPPERVGRAS--RSDPETRRRWEEEGFRQISLNKVAVLLLAGGQG 116
+RL PLPP G A+ R++P EEE + VA LLL GG G
Sbjct: 15 SRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSG 64
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 35.8 bits (81), Expect = 0.094
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 69 ARLRPLPPERVGRAS--RSDPETRRRWEEEGFRQISLNKVAVLLLAGGQG 116
+RL PLPP G A+ R++P EEE + VA LLL GG G
Sbjct: 15 SRLSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSG 64
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 27 APEPRAALLAELALLEPEALREHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSD 86
+P+PRA + A+ LL+PEA C RA P GP AA+L L P GR +
Sbjct: 453 SPDPRAYVPAK-ELLKPEADPRPCERAPRG---PAGPAAQQAAKLFGLEP---GRPPPTG 505
Query: 87 PETRRRWEEEGFRQISLNKVAVL 109
PE +W+ + ++AVL
Sbjct: 506 PE--HKWKPFELGNFAATQMAVL 526
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 33.1 bits (74), Expect = 0.61
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 2 ASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRA------AE 55
A Q RA +R +E R + L+P AA A A C A A
Sbjct: 160 AKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAP 219
Query: 56 ACARPHGPPPDLAARLRPLPPERVGRASRS-DPETRRR 92
AR P P A P R GR S S D +RRR
Sbjct: 220 RAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLSRRR 257
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 33.1 bits (74), Expect = 0.61
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 2 ASEQDVRARLQRAGQEHLLRFWAELAPEPRAALLAELALLEPEALREHCRRA------AE 55
A Q RA +R +E R + L+P AA A A C A A
Sbjct: 160 AKLQQCRAERERIMREEKRRLFTPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAP 219
Query: 56 ACARPHGPPPDLAARLRPLPPERVGRASRS-DPETRRR 92
AR P P A P R GR S S D +RRR
Sbjct: 220 RAARKASPSPSSARTQPPPAGSRTGRKSHSLDSLSRRR 257
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 15/123 (12%)
Query: 25 ELAPEPRAALLAELALLEPE-------------ALREHCRRAAEACARPHGPPPDLAARL 71
E+A E +A L +L PE A H +RA E+C P L
Sbjct: 555 EVANEEKAMFLISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESCPDEEEGPFSLPEEE 614
Query: 72 RPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYRVG 131
R + R R D + R +++ Q L K + L G + P+G++R G
Sbjct: 615 RKVVEARATRLR--DFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLEDLPQPRGLFRGG 672
Query: 132 LPS 134
PS
Sbjct: 673 DPS 675
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 32.0 bits (71), Expect = 1.4
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 15/123 (12%)
Query: 25 ELAPEPRAALLAELALLEPE-------------ALREHCRRAAEACARPHGPPPDLAARL 71
E+A E +A L +L PE A H +RA E+C P L
Sbjct: 397 EVANEEKAMFLISASLQGPEMYEIYTSSKEDRNAWMAHIQRAVESCPDEEEGPFSLPEEE 456
Query: 72 RPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYRVG 131
R + R R D + R +++ Q L K + L G + P+G++R G
Sbjct: 457 RKVVEARATRLR--DFQERLSMKDQLIAQSLLEKQQIYLEMAEMGGLEDLPQPRGLFRGG 514
Query: 132 LPS 134
PS
Sbjct: 515 DPS 517
>gi|29171705 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 9 ARLQRAGQEHLLRFWAELAPEPRAALLAELALL---EPEALREHCRRAA---EACARPHG 62
A + R + FWA A R A A ALL P+A R RR A ++ P
Sbjct: 211 ASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 63 PPPDLAARLR 72
PPP A L+
Sbjct: 271 PPPRDVALLQ 280
>gi|19387846 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 9 ARLQRAGQEHLLRFWAELAPEPRAALLAELALL---EPEALREHCRRAA---EACARPHG 62
A + R + FWA A R A A ALL P+A R RR A ++ P
Sbjct: 211 ASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 63 PPPDLAARLR 72
PPP A L+
Sbjct: 271 PPPRDVALLQ 280
>gi|41350320 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 32.0 bits (71), Expect = 1.4
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 9 ARLQRAGQEHLLRFWAELAPEPRAALLAELALL---EPEALREHCRRAA---EACARPHG 62
A + R + FWA A R A A ALL P+A R RR A ++ P
Sbjct: 211 ASMARRASRGPIAFWARRASRTRLAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 63 PPPDLAARLR 72
PPP A L+
Sbjct: 271 PPPRDVALLQ 280
>gi|113420453 PREDICTED: similar to ubiquitin protein ligase E3
component n-recognin 5 isoform 1 [Homo sapiens]
Length = 2796
Score = 31.2 bits (69), Expect = 2.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 391 FAKNFAALEVLREEEFSPLKNAEPADRDSPRTARQALLTQHYRWALRA--------GARF 442
FA+ +A+E + S + + P +R ++R L + R +LRA GA
Sbjct: 950 FAERLSAVEAIANA-ISVVSSNGPGNRAGSSSSRSLRLREMMRRSLRAAGLGRHEAGASS 1008
Query: 443 LD---------AHGAWLPELPSLPPNGD-----PPAICEISPLVSYSGEG 478
D A +W+P+ P++ P+GD PA+ ++ + +G+G
Sbjct: 1009 SDHQDPVSPPIAPPSWVPDPPAMDPDGDIDFILAPAVGSLTTAATGTGQG 1058
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 42 EPEALREHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEG 97
EP +R A++ RP P PD R P PE + R R PE EEEG
Sbjct: 48 EPAPKGRGAQRDADSGVRPLPPLPDPGVRPLPPLPEELPRPRRPPPEDE---EEEG 100
>gi|15147337 ubiquitin protein ligase E3 component n-recognin 5 [Homo
sapiens]
Length = 2799
Score = 31.2 bits (69), Expect = 2.3
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 23/110 (20%)
Query: 391 FAKNFAALEVLREEEFSPLKNAEPADRDSPRTARQALLTQHYRWALRA--------GARF 442
FA+ +A+E + S + + P +R ++R L + R +LRA GA
Sbjct: 952 FAERLSAVEAIANA-ISVVSSNGPGNRAGSSSSRSLRLREMMRRSLRAAGLGRHEAGASS 1010
Query: 443 LD---------AHGAWLPELPSLPPNGD-----PPAICEISPLVSYSGEG 478
D A +W+P+ P++ P+GD PA+ ++ + +G+G
Sbjct: 1011 SDHQDPVSPPIAPPSWVPDPPAMDPDGDIDFILAPAVGSLTTAATGTGQG 1060
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 30.8 bits (68), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 50 CRRAAEACARPHGPPPDLAARLRPLPPERVGR 81
CRR +P PPDL++ + P+ ER R
Sbjct: 2022 CRRVCRMPVKPDDEPPDLSSIIEPITEERASR 2053
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 30 PRAALLAELALLEPEALREHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDP 87
P++ L E L+P+ A+EA RP PPP +A L P P RVG+ S P
Sbjct: 275 PQSGLRREEPDLQPQL-------ASEAPRRPAQPPPSKSALLPP-PSPRVGKRSPPGP 324
>gi|144953903 developmental pluripotency associated 4 [Homo sapiens]
Length = 304
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 412 AEPADRDSPRTARQALLTQHYRWALRA--GARFLDAHGAWLPELPSLPPNGDPPAI 465
A P +D P TA++A + + + L+ G L + PE+ +LPP G+PPA+
Sbjct: 125 AYPNQKDFPSTAKEAKIRKSLQKKLKVEKGETSLQSSETHPPEV-ALPPVGEPPAL 179
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 30.8 bits (68), Expect = 3.0
Identities = 19/65 (29%), Positives = 25/65 (38%)
Query: 415 ADRDSPRTARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSY 474
A P + +Q LL R A A P LP PP G PP + P ++
Sbjct: 194 ASSGQPCSCQQCLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGGPPGALAVRPSATF 253
Query: 475 SGEGL 479
+G L
Sbjct: 254 TGAAL 258
>gi|59853099 dynamin 1 isoform 1 [Homo sapiens]
Length = 864
Score = 30.4 bits (67), Expect = 4.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 60 PHGPPPDLAARLRPLP---PERVGRASRSDPETRR 91
P GPPP + +R P P R G+AS S PE+ R
Sbjct: 825 PFGPPPQVPSRPNRAPPGVPSRSGQASPSRPESPR 859
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 5.2
Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 28 PEPRAALLAELALLEPEALREHCRRAAEACARPHGP----PPDLAARLRPLPP 76
P PRA A LA P A A A P GP PP +AAR PLPP
Sbjct: 167 PGPRAQRAAPLAAPPPAPA------APPAVAPPAGPRRAPPPAVAAREPPLPP 213
>gi|239047414 slingshot 1 isoform 1 [Homo sapiens]
Length = 1049
Score = 29.6 bits (65), Expect = 6.8
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 393 KNFAALEVLREEEFSPLKNAEPA-------DRDSPRTARQALLTQHYRWALR-AGARFLD 444
KN + EV+ +EE SP K+ +PA +S + + L QH ++ A +
Sbjct: 764 KNPPSTEVVIKEESSPKKDMKPAKDLRLLFSNESEKPTTNSYLMQHQESIIQLQKAGLVR 823
Query: 445 AHGAWLPELPSLPPNGDPPA 464
H L L S+P + PP+
Sbjct: 824 KHTKELERLKSVPADPAPPS 843
>gi|134304838 eukaryotic translation initiation factor 2-alpha
kinase 3 [Homo sapiens]
Length = 1116
Score = 29.6 bits (65), Expect = 6.8
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 24 AELAPEPRAALLAELALLEPEALREHCRRAAEACARPHGPPPDLAARLRPLPPERV---- 79
A P A AE+ + + EAL AA P GP PD LRP V
Sbjct: 56 ATRVPAAGAVAAAEVTVEDAEALP-----AAAGEQEPRGPEPDDETELRPRGRSLVIIST 110
Query: 80 --GRASRSDPET--RRRWE 94
GR + DPE +++W+
Sbjct: 111 LDGRIAALDPENHGKKQWD 129
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 96 EGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYRVGLPSRKTLYQLQAERIRRVEQL 152
+ F Q+S N + L A + + VT PK R L R+ L QL+ E + R Q+
Sbjct: 6687 QDFHQLSQNLLLWLASAKNRRQKAHVTDPKADPRALLECRRELMQLEKELVERQPQV 6743
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.6 bits (65), Expect = 6.8
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 96 EGFRQISLNKVAVLLLAGGQGTRLGVTYPKGMYRVGLPSRKTLYQLQAERIRRVEQL 152
+ F Q+S N + L A + + VT PK R L R+ L QL+ E + R Q+
Sbjct: 6664 QDFHQLSQNLLLWLASAKNRRQKAHVTDPKADPRALLECRRELMQLEKELVERQPQV 6720
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 29.6 bits (65), Expect = 6.8
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 60 PHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGFRQISLNKVA--VLLLAGGQGT 117
P GPPP+ P PP+R R + ++P T R+ + +G R+ L KV LL G
Sbjct: 200 PAGPPPEDV----PGPPKRKEREAGNEPPTPRK-KVKGGRERHLKKVGGDACLLRGSDPG 254
Query: 118 RLGVTYPK 125
G+ P+
Sbjct: 255 GPGLLPPR 262
>gi|239756179 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 8.8
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 400 VLREEEFSPLKNAEPADRDSPRTARQALLTQHYRWALRAGA-------RFLDAHGAWLPE 452
V R FS L+ PA R R++R +H RAG RFL AH AWLP
Sbjct: 59 VTRMPMFSLLRETGPAWRTDYRSSRLRHAPRHP--VRRAGQGSWCSRMRFLPAHQAWLPG 116
Query: 453 LPSL 456
SL
Sbjct: 117 PHSL 120
>gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo
sapiens]
Length = 104
Score = 29.3 bits (64), Expect = 8.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 47 REHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGF 98
R C E ARP PP RL+ R+G+ R D E++ W +EG+
Sbjct: 56 RNSCPPHRERTARP--PPRHARTRLQGASL-RLGKGPRFDQESQGEWRKEGY 104
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,782,055
Number of Sequences: 37866
Number of extensions: 1092746
Number of successful extensions: 3218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 3192
Number of HSP's gapped (non-prelim): 51
length of query: 507
length of database: 18,247,518
effective HSP length: 107
effective length of query: 400
effective length of database: 14,195,856
effective search space: 5678342400
effective search space used: 5678342400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.