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Search of human proteins with 187608348
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|187608348 calreticulin 3 [Homo sapiens]
(384 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|187608348 calreticulin 3 [Homo sapiens] 810 0.0
gi|4757900 calreticulin precursor [Homo sapiens] 393 e-109
gi|194578888 calmegin [Homo sapiens] 148 7e-36
gi|4758004 calmegin [Homo sapiens] 148 7e-36
gi|66933005 calnexin precursor [Homo sapiens] 144 1e-34
gi|10716563 calnexin precursor [Homo sapiens] 144 1e-34
gi|82880656 coiled-coil domain containing 46 isoform a [Homo sap... 34 0.25
gi|5032165 tryptophan 2,3-dioxygenase [Homo sapiens] 33 0.56
gi|224177493 nuclear receptor subfamily 1, group D, member 2 iso... 31 1.6
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 31 1.6
gi|224177491 nuclear receptor subfamily 1, group D, member 2 iso... 31 1.6
gi|157364947 ecotropic viral integration site 1 isoform a [Homo ... 31 2.1
gi|157364945 ecotropic viral integration site 1 isoform b [Homo ... 31 2.1
gi|157364943 ecotropic viral integration site 1 isoform b [Homo ... 31 2.1
gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens] 31 2.1
gi|28466983 leprecan-like 2 [Homo sapiens] 30 2.8
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 30 2.8
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 30 3.7
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 30 3.7
gi|37655173 zinc finger protein 155 [Homo sapiens] 30 3.7
gi|37655171 zinc finger protein 155 [Homo sapiens] 30 3.7
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 30 3.7
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 30 4.8
gi|7657465 podocalyxin-like 2 [Homo sapiens] 30 4.8
gi|154813195 DENN/MADD domain containing 2A [Homo sapiens] 30 4.8
gi|219842214 protein phosphatase 1, regulatory (inhibitor) subun... 29 6.2
gi|219842212 protein phosphatase 1, regulatory (inhibitor) subun... 29 6.2
gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit... 29 6.2
gi|51093381 leptin receptor isoform 3 [Homo sapiens] 29 6.2
gi|51093379 leptin receptor isoform 2 [Homo sapiens] 29 6.2
>gi|187608348 calreticulin 3 [Homo sapiens]
Length = 384
Score = 810 bits (2091), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK 60
MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK
Sbjct: 1 MARALVQLWAICMLRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHK 60
Query: 61 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK 120
EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK
Sbjct: 61 EKDKGLQTTQNGRFYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQK 120
Query: 121 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL 180
NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL
Sbjct: 121 NLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDL 180
Query: 181 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ 240
SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ
Sbjct: 181 SYDVKIDGQSIESGSIEYDWNLTSLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQ 240
Query: 241 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI 300
SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI
Sbjct: 241 SDWNGDLDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENIGAI 300
Query: 301 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE 360
GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE
Sbjct: 301 GLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEE 360
Query: 361 EELLSGKINRHEHYFNQFHRRNEL 384
EELLSGKINRHEHYFNQFHRRNEL
Sbjct: 361 EELLSGKINRHEHYFNQFHRRNEL 384
>gi|4757900 calreticulin precursor [Homo sapiens]
Length = 417
Score = 393 bits (1010), Expect = e-109
Identities = 192/370 (51%), Positives = 254/370 (68%), Gaps = 21/370 (5%)
Query: 14 LRVALATVYFQEEFLDGEHWRNRWLQSTNDSRFGHFRLSSGKFYGHKEKDKGLQTTQNGR 73
L VA VYF+E+FLDG+ W +RW++S + S FG F LSSGKFYG +EKDKGLQT+Q+ R
Sbjct: 14 LAVAEPAVYFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDAR 73
Query: 74 FYAISARFKPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQYYIMFG 133
FYA+SA F+PFSNKG+TLV+Q+TVKHEQ +DCGGGY+K+FP +DQ +++G S+Y IMFG
Sbjct: 74 FYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFG 133
Query: 134 PDICGFDIKKVHVILHFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIES 193
PDICG KKVHVI ++K K K IRCK D FTHLYTLI+RPD +Y+VKID +ES
Sbjct: 134 PDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVES 193
Query: 194 GSIEYDWNLTSLKKETSPAESK--DWEQ------TKDNKAQDWEK--HFLDASTSKQSDW 243
GS+E DW+ KK P SK DW++ D+K +DW+K H D K DW
Sbjct: 194 GSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDW 253
Query: 244 NGDLDGDWPAPMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYLTQYDLSEFENIGA 299
+ ++DG+W P++Q P Y+ KP I +K W+H ++ N +Y + ++N G
Sbjct: 254 DEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGV 313
Query: 300 IGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPEREM-------DAIQAKEEM 352
+GL+LWQV+SGTIFDNFLIT+DE YA+ FG TWG TK E++M ++ +EE
Sbjct: 314 LGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQDEEQRLKEEEED 373
Query: 353 KKAREEEEEE 362
KK +EEEE E
Sbjct: 374 KKRKEEEEAE 383
>gi|194578888 calmegin [Homo sapiens]
Length = 610
Score = 148 bits (374), Expect = 7e-36
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 68/338 (20%)
Query: 63 DKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQ-- 119
D+GL + +AISA KPF K L++QY V + +DCGG YIK+ AD D
Sbjct: 108 DRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLL-ADTDDLI 166
Query: 120 -KNLNGKSQYYIMFGPDICGFDIKKVHVILH-------FKNKYHE--NKKLIRCKVDGFT 169
+N K+ Y IMFGPD CG D K + H F+ K+ + + L + D T
Sbjct: 167 LENFYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKT 226
Query: 170 HLYTLILRPDLSYDVKIDGQSIESGSIEYD---------------------WNLTSLKKE 208
HLYTL++ PD +++V +D + GS+ D W+ + +
Sbjct: 227 HLYTLVMNPDDTFEVLVDQTVVNKGSLLEDVVPPIKPPKEIEDPNDKKPEEWDERAKIPD 286
Query: 209 TSPAESKDWEQTKDNKAQD--------W----EKHFLDASTSKQSDWNGDLDGDWPAPML 256
S + +DW++++ + +D W K D + K DWN D DG+W AP +
Sbjct: 287 PSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQI 346
Query: 257 Q-----------KPPYQDGLKPEGI----------HKDVWLHRKMKNTDYLTQYDLSEFE 295
KPP D K +G+ ++ +W RK+ N DY
Sbjct: 347 LNPACRIGCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLT 406
Query: 296 NIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATW 333
+ A+GLELW + S FDNF+I ++E AD++ W
Sbjct: 407 SFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGW 444
>gi|4758004 calmegin [Homo sapiens]
Length = 610
Score = 148 bits (374), Expect = 7e-36
Identities = 102/338 (30%), Positives = 154/338 (45%), Gaps = 68/338 (20%)
Query: 63 DKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPADIDQ-- 119
D+GL + +AISA KPF K L++QY V + +DCGG YIK+ AD D
Sbjct: 108 DRGLVLKSRAKHHAISAVLAKPFIFADKPLIVQYEVNFQDGIDCGGAYIKLL-ADTDDLI 166
Query: 120 -KNLNGKSQYYIMFGPDICGFDIKKVHVILH-------FKNKYHE--NKKLIRCKVDGFT 169
+N K+ Y IMFGPD CG D K + H F+ K+ + + L + D T
Sbjct: 167 LENFYDKTSYIIMFGPDKCGEDYKLHFIFRHKHPKTGVFEEKHAKPPDVDLKKFFTDRKT 226
Query: 170 HLYTLILRPDLSYDVKIDGQSIESGSIEYD---------------------WNLTSLKKE 208
HLYTL++ PD +++V +D + GS+ D W+ + +
Sbjct: 227 HLYTLVMNPDDTFEVLVDQTVVNKGSLLEDVVPPIKPPKEIEDPNDKKPEEWDERAKIPD 286
Query: 209 TSPAESKDWEQTKDNKAQD--------W----EKHFLDASTSKQSDWNGDLDGDWPAPML 256
S + +DW++++ + +D W K D + K DWN D DG+W AP +
Sbjct: 287 PSAVKPEDWDESEPAQIEDSSVVKPAGWLDDEPKFIPDPNAEKPDDWNEDTDGEWEAPQI 346
Query: 257 Q-----------KPPYQDGLKPEGI----------HKDVWLHRKMKNTDYLTQYDLSEFE 295
KPP D K +G+ ++ +W RK+ N DY
Sbjct: 347 LNPACRIGCGEWKPPMIDNPKYKGVWRPPLVDNPNYQGIWSPRKIPNPDYFEDDHPFLLT 406
Query: 296 NIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATW 333
+ A+GLELW + S FDNF+I ++E AD++ W
Sbjct: 407 SFSALGLELWSMTSDIYFDNFIICSEKEVADHWAADGW 444
>gi|66933005 calnexin precursor [Homo sapiens]
Length = 592
Score = 144 bits (364), Expect = 1e-34
Identities = 100/347 (28%), Positives = 148/347 (42%), Gaps = 70/347 (20%)
Query: 63 DKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPA--DIDQ 119
DKGL + +AISA+ KPF K L++QY V + ++CGG Y+K+ +++
Sbjct: 117 DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNL 176
Query: 120 KNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNK---YHENKKLIRCKVD-------GFT 169
+ K+ Y IMFGPD CG D K +H I KN +E K R D T
Sbjct: 177 DQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKT 235
Query: 170 HLYTLILRPDLSYDVKIDGQSIESGSI---------------------EYDWNLTSLKKE 208
HLYTLIL PD S+++ +D + SG++ DW+ +
Sbjct: 236 HLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPD 295
Query: 209 TSPAESKDWEQTKDNKAQDWE------------KHFLDASTSKQSDWNGDLDGDWPA--- 253
+ DW++ K D E ++ D K DW+ D+DG+W A
Sbjct: 296 PEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQI 355
Query: 254 ----------------PMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYLTQYDLSE 293
P++ P Y+ KP I ++ +W RK+ N D+ +
Sbjct: 356 ANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFR 415
Query: 294 FENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPE 340
AIGLELW + S FDNF+I D D++ WG K +
Sbjct: 416 MTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAAD 462
>gi|10716563 calnexin precursor [Homo sapiens]
Length = 592
Score = 144 bits (364), Expect = 1e-34
Identities = 100/347 (28%), Positives = 148/347 (42%), Gaps = 70/347 (20%)
Query: 63 DKGLQTTQNGRFYAISARF-KPFSNKGKTLVIQYTVKHEQKMDCGGGYIKVFPA--DIDQ 119
DKGL + +AISA+ KPF K L++QY V + ++CGG Y+K+ +++
Sbjct: 117 DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNL 176
Query: 120 KNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNK---YHENKKLIRCKVD-------GFT 169
+ K+ Y IMFGPD CG D K +H I KN +E K R D T
Sbjct: 177 DQFHDKTPYTIMFGPDKCGEDYK-LHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKT 235
Query: 170 HLYTLILRPDLSYDVKIDGQSIESGSI---------------------EYDWNLTSLKKE 208
HLYTLIL PD S+++ +D + SG++ DW+ +
Sbjct: 236 HLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPD 295
Query: 209 TSPAESKDWEQTKDNKAQDWE------------KHFLDASTSKQSDWNGDLDGDWPA--- 253
+ DW++ K D E ++ D K DW+ D+DG+W A
Sbjct: 296 PEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQI 355
Query: 254 ----------------PMLQKPPYQDGLKPEGI----HKDVWLHRKMKNTDYLTQYDLSE 293
P++ P Y+ KP I ++ +W RK+ N D+ +
Sbjct: 356 ANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFR 415
Query: 294 FENIGAIGLELWQVRSGTIFDNFLITDDEEYADNFGKATWGETKGPE 340
AIGLELW + S FDNF+I D D++ WG K +
Sbjct: 416 MTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAAD 462
>gi|82880656 coiled-coil domain containing 46 isoform a [Homo
sapiens]
Length = 955
Score = 33.9 bits (76), Expect = 0.25
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 149 HFKNKYHENKKLIRCKVDGFTHLYTLILRPDLSYDVKIDGQSIESGSIEYDWNLTSLKKE 208
H N Y +N KL++ K D +L L + + S E + N+ LK++
Sbjct: 468 HLVNDYEQNMKLLQTKYDADINL--------LKQEHALSASKASSMIEELEQNVCQLKQQ 519
Query: 209 TSPAESKDWEQTKD--NKAQDWEKHFLDASTSKQSDWNGDLD 248
+E + +Q +D NK Q + H K D +LD
Sbjct: 520 LQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELD 561
>gi|5032165 tryptophan 2,3-dioxygenase [Homo sapiens]
Length = 406
Score = 32.7 bits (73), Expect = 0.56
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 322 EEYADNF-GKATWGETKGPEREMDAIQAKEEMKKAREE------EEEELLS-GKINRHEH 373
E + NF GK T+G E E IQAKEE ++ E+ ++E LLS RHEH
Sbjct: 216 EPHGFNFWGKLEKNITRGLEEEFIRIQAKEESEEKEEQVAEFQKQKEVLLSLFDEKRHEH 275
Query: 374 YFNQFHRR 381
++ RR
Sbjct: 276 LLSKGERR 283
>gi|224177493 nuclear receptor subfamily 1, group D, member 2
isoform 2 [Homo sapiens]
Length = 504
Score = 31.2 bits (69), Expect = 1.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 94 QYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQ-YYIMFGPDICGFDIKKVHVILHFKN 152
QY + H+ CG G FP Q++LNG+ + IM P+ I H ++F N
Sbjct: 218 QYNLNHDH---CGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGHAICIANGH-CMNFSN 273
Query: 153 KYHENKKLIRCKVDGFT 169
Y + + R +DGF+
Sbjct: 274 AYTQ-RVCDRVPIDGFS 289
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 204 SLKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQSDWNGDLDGDWP 252
S K P E+K+ ++ NK ++WEKH +++D + ++D D+P
Sbjct: 433 SWKSNRWPQENKETQKEMKNKNRNWEKH-------RKADRHREVDEDFP 474
>gi|224177491 nuclear receptor subfamily 1, group D, member 2
isoform 1 [Homo sapiens]
Length = 579
Score = 31.2 bits (69), Expect = 1.6
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 94 QYTVKHEQKMDCGGGYIKVFPADIDQKNLNGKSQ-YYIMFGPDICGFDIKKVHVILHFKN 152
QY + H+ CG G FP Q++LNG+ + IM P+ I H ++F N
Sbjct: 293 QYNLNHDH---CGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGHAICIANGH-CMNFSN 348
Query: 153 KYHENKKLIRCKVDGFT 169
Y + + R +DGF+
Sbjct: 349 AYTQ-RVCDRVPIDGFS 364
>gi|157364947 ecotropic viral integration site 1 isoform a [Homo
sapiens]
Length = 1115
Score = 30.8 bits (68), Expect = 2.1
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 190 SIESGSIEYDWNLTS---LKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQSDWNGD 246
++ G+ E D+ TS + +TSP K+ E A D +HF D+ ++ + N
Sbjct: 984 NLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQY 1043
Query: 247 LDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENI 297
+ + + + PE + + LHRK K+ Y LS+ E++
Sbjct: 1044 SEAELSS-------FSTSHVPEELKQP--LHRKSKSQAYAMMLSLSDKESL 1085
>gi|157364945 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 30.8 bits (68), Expect = 2.1
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 190 SIESGSIEYDWNLTS---LKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQSDWNGD 246
++ G+ E D+ TS + +TSP K+ E A D +HF D+ ++ + N
Sbjct: 920 NLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQY 979
Query: 247 LDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENI 297
+ + + + PE + + LHRK K+ Y LS+ E++
Sbjct: 980 SEAELSS-------FSTSHVPEELKQP--LHRKSKSQAYAMMLSLSDKESL 1021
>gi|157364943 ecotropic viral integration site 1 isoform b [Homo
sapiens]
Length = 1051
Score = 30.8 bits (68), Expect = 2.1
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 190 SIESGSIEYDWNLTS---LKKETSPAESKDWEQTKDNKAQDWEKHFLDASTSKQSDWNGD 246
++ G+ E D+ TS + +TSP K+ E A D +HF D+ ++ + N
Sbjct: 920 NLHEGNPEDDYEETSALEMSCKTSPVRYKEEEYKSGLSALDHIRHFTDSLKMRKMEDNQY 979
Query: 247 LDGDWPAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENI 297
+ + + + PE + + LHRK K+ Y LS+ E++
Sbjct: 980 SEAELSS-------FSTSHVPEELKQP--LHRKSKSQAYAMMLSLSDKESL 1021
>gi|55769583 progesterone-induced blocking factor 1 [Homo sapiens]
Length = 757
Score = 30.8 bits (68), Expect = 2.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 317 LITDDEEYADNFGKATWGETKGPEREMDAIQAK-EEMKKAREEEEEELLSGKINRHEHYF 375
L+ D+EY + E ++ +QA+ EE KKAREE E+ ++ + + Y
Sbjct: 315 LLQKDKEYLNRQNMELSVRCAHEEDRLERLQAQLEESKKAREEMYEKYVASRDHYKTEYE 374
Query: 376 NQFH 379
N+ H
Sbjct: 375 NKLH 378
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 30.4 bits (67), Expect = 2.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 331 ATWGETKGPEREMDAIQAKEEMKKAREEEEEE 362
A W RE + I+AKE +++++EEEEEE
Sbjct: 670 ALWHTWAPEHREQEWIEAKELLQESQEEEEEE 701
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 30.4 bits (67), Expect = 2.8
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 313 FDNFLITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEE 361
+D D+ +YA + +++W E + E + + +E++++ R EEEE
Sbjct: 625 YDRKKYKDESDYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEE 673
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 30.0 bits (66), Expect = 3.7
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 323 EYADNFGKATWGETKGPEREMDAIQAKEEMKKA-REEEEEELLSGKINRHEHYFNQFHR 380
E A+ F + T+ E + E + Q KEE KKA E+++ S K N+++ NQF+R
Sbjct: 625 EVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNR 683
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 30.0 bits (66), Expect = 3.7
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 323 EYADNFGKATWGETKGPEREMDAIQAKEEMKKA-REEEEEELLSGKINRHEHYFNQFHR 380
E A+ F + T+ E + E + Q KEE KKA E+++ S K N+++ NQF+R
Sbjct: 644 EVAECFDEITYVELQKEEAQKLLEQYKEESKKALPPEKKQNTGSKKSNKNKSGKNQFNR 702
>gi|37655173 zinc finger protein 155 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 104 DCGGGYIKVFPADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRC 163
+CG GY+ F D+ Q+ G+ Y CG + + IL+ K + H KK +C
Sbjct: 432 ECGKGYVTKFNLDLHQRVHTGERPY----NCKECGKNFSRASSILNHK-RLHCQKKPFKC 486
Query: 164 K 164
+
Sbjct: 487 E 487
>gi|37655171 zinc finger protein 155 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 3.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 104 DCGGGYIKVFPADIDQKNLNGKSQYYIMFGPDICGFDIKKVHVILHFKNKYHENKKLIRC 163
+CG GY+ F D+ Q+ G+ Y CG + + IL+ K + H KK +C
Sbjct: 432 ECGKGYVTKFNLDLHQRVHTGERPY----NCKECGKNFSRASSILNHK-RLHCQKKPFKC 486
Query: 164 K 164
+
Sbjct: 487 E 487
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 30.0 bits (66), Expect = 3.7
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 320 DDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEEE 362
+DE+ ++ G + G+++ E E + + +EE ++ EEEEEE
Sbjct: 843 NDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEE 885
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 29.6 bits (65), Expect = 4.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 323 EYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEEE 362
E + G+ GE +G ERE + EE ++ REEEEEE
Sbjct: 1028 EEGEGEGEEEEGEEEGEEREKEG--EGEENRRNREEEEEE 1065
>gi|7657465 podocalyxin-like 2 [Homo sapiens]
Length = 605
Score = 29.6 bits (65), Expect = 4.8
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 340 EREMDAIQAKEEMKKAREEEEEELL 364
E E + + KEE++K EEEEEELL
Sbjct: 166 EEEEEEEREKEEVEKQEEEEEEELL 190
>gi|154813195 DENN/MADD domain containing 2A [Homo sapiens]
Length = 1009
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 252 PAPMLQKPPYQDGLKPEGIHKDVWLHRKMKNTDYLTQYDLSEFENI 297
P P L PP P +++ +W R+ + D+ Y EFE++
Sbjct: 298 PLPSLPPPPLPSSPPPSSVNRRLWTGRQKSSADHRKSY---EFEDL 340
>gi|219842214 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform b [Homo sapiens]
Length = 943
Score = 29.3 bits (64), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 318 ITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQ 377
+TD +E G++ T+ E E + KE+ K ++EE++E + +R + Y +
Sbjct: 614 LTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKE---SETSREDEYKQK 670
Query: 378 FHR 380
+ R
Sbjct: 671 YSR 673
>gi|219842212 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 29.3 bits (64), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 318 ITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQ 377
+TD +E G++ T+ E E + KE+ K ++EE++E + +R + Y +
Sbjct: 701 LTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKE---SETSREDEYKQK 757
Query: 378 FHR 380
+ R
Sbjct: 758 YSR 760
>gi|4505317 protein phosphatase 1, regulatory (inhibitor) subunit
12A isoform a [Homo sapiens]
Length = 1030
Score = 29.3 bits (64), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 318 ITDDEEYADNFGKATWGETKGPEREMDAIQAKEEMKKAREEEEEELLSGKINRHEHYFNQ 377
+TD +E G++ T+ E E + KE+ K ++EE++E + +R + Y +
Sbjct: 701 LTDLQEAEKTIGRSRSTRTREQENEEKEKEEKEKQDKEKQEEKKE---SETSREDEYKQK 757
Query: 378 FHR 380
+ R
Sbjct: 758 YSR 760
>gi|51093381 leptin receptor isoform 3 [Homo sapiens]
Length = 958
Score = 29.3 bits (64), Expect = 6.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 148 LHFKNKYHENKKLIRCKVDGFTHLYTLI---LRPDLSYDVKIDGQSIESGSIEYDWN 201
L ++ KY EN + + D +L+ + P SY+V++ G+ ++ I DW+
Sbjct: 267 LQYQVKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWS 323
>gi|51093379 leptin receptor isoform 2 [Homo sapiens]
Length = 896
Score = 29.3 bits (64), Expect = 6.2
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 148 LHFKNKYHENKKLIRCKVDGFTHLYTLI---LRPDLSYDVKIDGQSIESGSIEYDWN 201
L ++ KY EN + + D +L+ + P SY+V++ G+ ++ I DW+
Sbjct: 267 LQYQVKYSENSTTVIREADKIVSATSLLVDSILPGSSYEVQVRGKRLDGPGIWSDWS 323
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,713,761
Number of Sequences: 37866
Number of extensions: 742619
Number of successful extensions: 3698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3583
Number of HSP's gapped (non-prelim): 93
length of query: 384
length of database: 18,247,518
effective HSP length: 104
effective length of query: 280
effective length of database: 14,309,454
effective search space: 4006647120
effective search space used: 4006647120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.