Guide to the Human Genome
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Name: TDO2 Sequence: fasta or formatted (406aa) NCBI GI: 5032165
Description:

tryptophan 2,3-dioxygenase

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         12           1
 C cysteine            0.7          3           1
 D aspartate           3.7         15           1
 E glutamate          10.3         42           3
 F phenylalanine       5.9         24           1
 G glycine             5.9         24           2
 H histidine           3.7         15           1
 I isoleucine          4.2         17           2
 K lysine              6.7         27           2
 L leucine            12.3         50           3
 M methionine          2.7         11           1
 N asparagine          4.7         19           2
 P proline             2.7         11           1
 Q glutamine           4.7         19           2
 R arginine            6.4         26           2
 S serine              7.4         30           2
 T threonine           3.9         16           1
 V valine              5.2         21           2
 W tryptophan          1.5          6           1
 Y tyrosine            4.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tryptophan 2,3-dioxygenase 
BAT2D1                0.019   HBxAg transactivated protein 2 
DZIP1                 0.016   DAZ interacting protein 1 isoform 2 
DZIP1                 0.016   DAZ interacting protein 1 isoform 1 
GCC2                  0.012   GRIP and coiled-coil domain-containing 2 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
NAT1                  0.012   N-acetyltransferase 1 isoform b 
NAT1                  0.012   N-acetyltransferase 1 isoform b 
NCOR1                 0.012   nuclear receptor co-repressor 1 
NAT1                  0.012   N-acetyltransferase 1 isoform a 
TCHH                  0.012   trichohyalin 
MAP7D2                0.011   MAP7 domain containing 2 
RB1CC1                0.011   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.011   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
MSN                   0.010   moesin 
CCDC33                0.010   coiled-coil domain containing 33 isoform 1 
CCDC33                0.010   coiled-coil domain containing 33 isoform 2 
CALR3                 0.010   calreticulin 3 
PELP1                 0.009   proline, glutamic acid and leucine rich protein 1 [...
ANKRD12               0.009   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.009   ankyrin repeat domain 12 isoform 1 
DBNL                  0.009   drebrin-like isoform c 
DBNL                  0.009   drebrin-like isoform b 
DBNL                  0.009   drebrin-like isoform a 
BAZ1A                 0.009   bromodomain adjacent to zinc finger domain, 1A isofo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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