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Search of human proteins with 113411962
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113411962 PREDICTED: hypothetical protein [Homo sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113411962 PREDICTED: hypothetical protein [Homo sapiens] 532 e-151
gi|113403778 PREDICTED: hypothetical protein [Homo sapiens] 443 e-125
gi|169161027 PREDICTED: hypothetical protein [Homo sapiens] 441 e-124
gi|55749480 syndecan 1 precursor [Homo sapiens] 38 0.010
gi|29568086 syndecan 1 precursor [Homo sapiens] 38 0.010
gi|197927160 solute carrier family 4, sodium bicarbonate cotrans... 36 0.037
gi|4507025 solute carrier family 4, sodium bicarbonate cotranspo... 36 0.037
gi|148596928 solute carrier family 4, sodium bicarbonate cotrans... 36 0.037
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 36 0.037
gi|169167066 PREDICTED: hypothetical protein [Homo sapiens] 35 0.048
gi|113416187 PREDICTED: hypothetical protein [Homo sapiens] 35 0.048
gi|113415691 PREDICTED: hypothetical protein [Homo sapiens] 35 0.048
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 35 0.082
gi|38327037 hyperpolarization activated cyclic nucleotide-gated ... 35 0.082
gi|222537747 hypothetical protein LOC342979 [Homo sapiens] 34 0.11
gi|110227615 echinoderm microtubule associated protein like 3 [H... 34 0.11
gi|55956910 meningioma 1 [Homo sapiens] 34 0.14
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 33 0.24
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 33 0.24
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 33 0.24
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 33 0.24
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 33 0.24
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 33 0.24
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 33 0.24
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 33 0.24
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 33 0.24
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.41
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.41
gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens] 32 0.41
gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens] 32 0.53
>gi|113411962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 532 bits (1370), Expect = e-151
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA 60
MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA
Sbjct: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA 60
Query: 61 QLSPRGSTAQKVRQRPCQLPSLPGLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 120
QLSPRGSTAQKVRQRPCQLPSLPGLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS
Sbjct: 61 QLSPRGSTAQKVRQRPCQLPSLPGLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 120
Query: 121 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 180
DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF
Sbjct: 121 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 180
Query: 181 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS 240
SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS
Sbjct: 181 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS 240
Query: 241 GFPRPCSVVLPGGP 254
GFPRPCSVVLPGGP
Sbjct: 241 GFPRPCSVVLPGGP 254
>gi|113403778 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 443 bits (1139), Expect = e-125
Identities = 219/254 (86%), Positives = 219/254 (86%), Gaps = 35/254 (13%)
Query: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA 60
MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVP
Sbjct: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVP------------ 48
Query: 61 QLSPRGSTAQKVRQRPCQLPSLPGLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 120
GLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS
Sbjct: 49 -----------------------GLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 85
Query: 121 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 180
DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF
Sbjct: 86 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 145
Query: 181 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS 240
SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS
Sbjct: 146 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS 205
Query: 241 GFPRPCSVVLPGGP 254
GFPRPCSVVLPGGP
Sbjct: 206 GFPRPCSVVLPGGP 219
>gi|169161027 PREDICTED: hypothetical protein [Homo sapiens]
Length = 219
Score = 441 bits (1134), Expect = e-124
Identities = 218/254 (85%), Positives = 218/254 (85%), Gaps = 35/254 (13%)
Query: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA 60
MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVP
Sbjct: 1 MDIKRSFRGHLFNLLGAHGRRCTVTLWFPLHPPPSFVLSLSAAGSNVP------------ 48
Query: 61 QLSPRGSTAQKVRQRPCQLPSLPGLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 120
GLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS
Sbjct: 49 -----------------------GLFKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTS 85
Query: 121 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 180
DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF
Sbjct: 86 DPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGAHRAF 145
Query: 181 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSNLS 240
SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPN QASNVTGATHRSNLS
Sbjct: 146 SFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNAQASNVTGATHRSNLS 205
Query: 241 GFPRPCSVVLPGGP 254
GFPRPCSVVLPGGP
Sbjct: 206 GFPRPCSVVLPGGP 219
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 37.7 bits (86), Expect = 0.010
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 29 PLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA--QLSPRGSTA--QKVRQRPCQLPSLPG 84
P P P+ + + +A+ S +PA + P G ++ P G TA Q+ RP + LP
Sbjct: 75 PTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEP-GLTAREQEATPRPRETTQLPT 133
Query: 85 LFKGLKAKGDDEFIPQVLV----VRPGEYQTLLPARGPTSDPH-HHPCPGGAPVRNTGSE 139
+ P ++PG ++T PA +D H H GG +E
Sbjct: 134 THQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAE 193
Query: 140 DGSGSSSAARKATGQ 154
DG+ S A + +G+
Sbjct: 194 DGASSQLPAAEGSGE 208
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 37.7 bits (86), Expect = 0.010
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 29 PLHPPPSFVLSLSAAGSNVPALDLPPHGRTTA--QLSPRGSTA--QKVRQRPCQLPSLPG 84
P P P+ + + +A+ S +PA + P G ++ P G TA Q+ RP + LP
Sbjct: 75 PTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLPEVEP-GLTAREQEATPRPRETTQLPT 133
Query: 85 LFKGLKAKGDDEFIPQVLV----VRPGEYQTLLPARGPTSDPH-HHPCPGGAPVRNTGSE 139
+ P ++PG ++T PA +D H H GG +E
Sbjct: 134 THQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAE 193
Query: 140 DGSGSSSAARKATGQ 154
DG+ S A + +G+
Sbjct: 194 DGASSQLPAAEGSGE 208
>gi|197927160 solute carrier family 4, sodium bicarbonate
cotransporter, member 4 isoform 3 [Homo sapiens]
Length = 1094
Score = 35.8 bits (81), Expect = 0.037
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 93 GDDEFIPQVLVVRPGEYQTLL----PARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAA 148
G DEF+ +V+V+ PGE+ + P P+SD + GG V+ G G
Sbjct: 369 GIDEFLDEVIVLPPGEWDPAIRIEPPKSLPSSDKRKNMYSGGENVQMNGDTPHDGGH--- 425
Query: 149 RKATGQGGHRLLQWVKAAQRTGRTIPG 175
G GGH + QRTGR G
Sbjct: 426 ----GGGGHGDCE---ELQRTGRFCGG 445
>gi|4507025 solute carrier family 4, sodium bicarbonate
cotransporter, member 4 isoform 2 [Homo sapiens]
Length = 1035
Score = 35.8 bits (81), Expect = 0.037
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 93 GDDEFIPQVLVVRPGEYQTLL----PARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAA 148
G DEF+ +V+V+ PGE+ + P P+SD + GG V+ G G
Sbjct: 325 GIDEFLDEVIVLPPGEWDPAIRIEPPKSLPSSDKRKNMYSGGENVQMNGDTPHDGGH--- 381
Query: 149 RKATGQGGHRLLQWVKAAQRTGRTIPG 175
G GGH + QRTGR G
Sbjct: 382 ----GGGGHGDCE---ELQRTGRFCGG 401
>gi|148596928 solute carrier family 4, sodium bicarbonate
cotransporter, member 4 isoform 1 [Homo sapiens]
Length = 1079
Score = 35.8 bits (81), Expect = 0.037
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 93 GDDEFIPQVLVVRPGEYQTLL----PARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAA 148
G DEF+ +V+V+ PGE+ + P P+SD + GG V+ G G
Sbjct: 369 GIDEFLDEVIVLPPGEWDPAIRIEPPKSLPSSDKRKNMYSGGENVQMNGDTPHDGGH--- 425
Query: 149 RKATGQGGHRLLQWVKAAQRTGRTIPG 175
G GGH + QRTGR G
Sbjct: 426 ----GGGGHGDCE---ELQRTGRFCGG 445
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.8 bits (81), Expect = 0.037
Identities = 28/87 (32%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 99 PQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHR 158
P V V P T +PA P S P P P APV + S +AA AT G
Sbjct: 4 PAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPV-PAAAPASSSDPAAAAAATAAPGQT 62
Query: 159 LLQWVKAAQRTGRTIPGAHRAFSFPWG 185
AQ +PG FP G
Sbjct: 63 PASAQAPAQTPAPALPGPALPGPFPGG 89
>gi|169167066 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.048
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 27/130 (20%)
Query: 29 PLHPP-PSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVRQRPCQLPSLPGLFK 87
PL PP P + + S PA DLPP R++++ RG Q CQ+ + P
Sbjct: 49 PLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLARGRITQ------CQVAASP---- 98
Query: 88 GLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTSDP--HHHPCPG----GAPVRNTGSEDG 141
L P+ L+ LPA GP P PC G G P G E G
Sbjct: 99 -LVPPPAPPHCPRPLL-------CFLPAAGPAGLPPLRTSPCSGVTFAGRP--RLGQESG 148
Query: 142 SGSSSAARKA 151
G ++ R+A
Sbjct: 149 QGVAARRRRA 158
>gi|113416187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.048
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 27/130 (20%)
Query: 29 PLHPP-PSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVRQRPCQLPSLPGLFK 87
PL PP P + + S PA DLPP R++++ RG Q CQ+ + P
Sbjct: 49 PLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLARGRITQ------CQVAASP---- 98
Query: 88 GLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTSDP--HHHPCPG----GAPVRNTGSEDG 141
L P+ L+ LPA GP P PC G G P G E G
Sbjct: 99 -LVPPPAPPHCPRPLL-------CFLPAAGPAGLPPLRTSPCSGVTFAGRP--RLGQESG 148
Query: 142 SGSSSAARKA 151
G ++ R+A
Sbjct: 149 QGVAARRRRA 158
>gi|113415691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 262
Score = 35.4 bits (80), Expect = 0.048
Identities = 39/130 (30%), Positives = 52/130 (40%), Gaps = 27/130 (20%)
Query: 29 PLHPP-PSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVRQRPCQLPSLPGLFK 87
PL PP P + + S PA DLPP R++++ RG Q CQ+ + P
Sbjct: 49 PLPPPGPRLLRACSLLLPTEPAPDLPPRRRSSSRSLARGRITQ------CQVAASP---- 98
Query: 88 GLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTSDP--HHHPCPG----GAPVRNTGSEDG 141
L P+ L+ LPA GP P PC G G P G E G
Sbjct: 99 -LVPPPAPPHCPRPLL-------CFLPAAGPAGLPPLRTSPCSGVTFAGRP--RLGQESG 148
Query: 142 SGSSSAARKA 151
G ++ R+A
Sbjct: 149 QGVAARRRRA 158
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 34.7 bits (78), Expect = 0.082
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 114 PARGPTSDPHHHPC--PGGAPVRNTGSEDGSGSSS--AARKATGQGGHRLLQWVKAAQRT 169
PAR P SDP P PG TG G ++ R A + L+ +
Sbjct: 1058 PARWPRSDPESQPLLGPGAGGAGGTGGAGGGAPAAPPPCRAAPPPCPYLDLEPSPSDSED 1117
Query: 170 GRTIPGAHRAFSFPWG------PRQLGLGRPPGSFWKLLQQARGRAG 210
++ GA PW P LG PPG +W + + RAG
Sbjct: 1118 SESLGGASLGGLEPWWFADFPYPYAERLGPPPGRYWSVDKLGGWRAG 1164
>gi|38327037 hyperpolarization activated cyclic nucleotide-gated
potassium channel 3 [Homo sapiens]
Length = 774
Score = 34.7 bits (78), Expect = 0.082
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 29 PLHPPPSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVRQRPCQLPSLPGL--- 85
P P + SLS AG + +L PP G +L PRG R PSLP
Sbjct: 672 PAPPARTLHASLSRAGRSQVSLLGPPPGGGGRRLGPRG------RPLSASQPSLPQRATG 725
Query: 86 --FKGLKAKGDDEFIPQVLVVRPGEYQTLLPARGPTSDP 122
G K G + P L+ +P +T P R P +P
Sbjct: 726 DGSPGRKGSGSERLPPSGLLAKPP--RTAQPPRPPVPEP 762
>gi|222537747 hypothetical protein LOC342979 [Homo sapiens]
Length = 673
Score = 34.3 bits (77), Expect = 0.11
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 105 RPGEYQTLLPARGPTSDPHHHPCPGGAPVRN------TGSEDGSG 143
+P E Q LL GP+++P HP P AP R T E+ SG
Sbjct: 617 QPAECQPLLQGEGPSANPSAHPVPTYAPARQPEPSAPTEGEEASG 661
>gi|110227615 echinoderm microtubule associated protein like 3 [Homo
sapiens]
Length = 896
Score = 34.3 bits (77), Expect = 0.11
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 6/139 (4%)
Query: 117 GPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIPGA 176
GP + P P GA +G++ G SS++ A G +L+ ++ QR +
Sbjct: 98 GPPGLSNGPPAPQGASEEPSGTQSEGGGSSSS-GAGSPGPPGILRPLQPPQRADTPRRNS 156
Query: 177 HRAFSFPWGPRQLGLGRPPGSFWKLLQQARGRAGEGNSAVLLAPESPNTQAS--NVTGAT 234
+ S PRQ L R S LL ++ G L +P P ++ S N+ G +
Sbjct: 157 SSSSSPSERPRQ-KLSRKAISSANLLVRSGSTESRGGKDPLSSPGGPGSRRSNYNLEGIS 215
Query: 235 HRSNLSGFPRPCSVVLPGG 253
+ L G RP ++ +P G
Sbjct: 216 VKMFLRG--RPITMYIPSG 232
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 33.9 bits (76), Expect = 0.14
Identities = 52/188 (27%), Positives = 68/188 (36%), Gaps = 40/188 (21%)
Query: 27 WFP-LHPPPSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVR---QRPCQLPS- 81
WF HPPP +L GS +PA D PH + A P G + R Q P ++P
Sbjct: 631 WFSGPHPPPGDLLPRRMGGSGLPA-DCGPHDPSLAPPPPPGGSGVLFRGPLQEPMRMPGE 689
Query: 82 -------LPGLFKG--------LKAKGDDEFIPQVLVVR---PGEYQTL---------LP 114
PGL G L++ G +P R P ++ T
Sbjct: 690 GHVPALPSPGLQFGGSLGGLGQLQSPGAGVGLPSAASERRPPPPDFATSALGGQPGFPFG 749
Query: 115 ARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKATGQGGHRLLQWVKAAQRTGRTIP 174
A G S PH G V + S G G SS G G + + +QRT +
Sbjct: 750 AAGRQSTPH-----SGPGVNSPPSAGGGGGSSGG--GGGGGAYPPQPDFQPSQRTSASKL 802
Query: 175 GAHRAFSF 182
GA SF
Sbjct: 803 GALSLGSF 810
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 259 KGDRQAPPGPPARFPWPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 315
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 316 GGPQGSWRFLQW 327
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 33.1 bits (74), Expect = 0.24
Identities = 26/72 (36%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 92 KGDDEFIPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNTGSEDGSGSSSAARKA 151
KGD + P P + P R P S PCPGGA +T G S A
Sbjct: 384 KGDRQAPPGPPARFPRPIWSASPPRAPRSST---PCPGGAVREDTYPVGTQGVPSPALAQ 440
Query: 152 TG-QGGHRLLQW 162
G QG R LQW
Sbjct: 441 GGPQGSWRFLQW 452
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.3 bits (72), Expect = 0.41
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 98 IPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNT-GSEDGSGSSSAARKATGQGG 156
+P L PG +L R P SD + P GAP R + SE G S + + GG
Sbjct: 2150 LPAPLYSFPGASCPVLDLRRPPSDLYLPPPDHGAPARGSPHSEGGKRSPEPNKTSVLGGG 2209
Query: 157 HRLLQWVKAAQRTGRTIPGAHRAFSFP--------WGPRQLG------LGRPPGSFWKLL 202
++ V + G T PG R+ +P P ++G +PP F KL
Sbjct: 2210 EDGIEPVSPPE--GMTEPGHSRSAVYPLLYRDGEQTEPSRMGSKSPGNTSQPPAFFSKLT 2267
Query: 203 QQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSN 238
E NSA++ + + + N TH N
Sbjct: 2268 --------ESNSAMVKSKKQEINKKLN----THNRN 2291
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.3 bits (72), Expect = 0.41
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 98 IPQVLVVRPGEYQTLLPARGPTSDPHHHPCPGGAPVRNT-GSEDGSGSSSAARKATGQGG 156
+P L PG +L R P SD + P GAP R + SE G S + + GG
Sbjct: 2166 LPAPLYSFPGASCPVLDLRRPPSDLYLPPPDHGAPARGSPHSEGGKRSPEPNKTSVLGGG 2225
Query: 157 HRLLQWVKAAQRTGRTIPGAHRAFSFP--------WGPRQLG------LGRPPGSFWKLL 202
++ V + G T PG R+ +P P ++G +PP F KL
Sbjct: 2226 EDGIEPVSPPE--GMTEPGHSRSAVYPLLYRDGEQTEPSRMGSKSPGNTSQPPAFFSKLT 2283
Query: 203 QQARGRAGEGNSAVLLAPESPNTQASNVTGATHRSN 238
E NSA++ + + + N TH N
Sbjct: 2284 --------ESNSAMVKSKKQEINKKLN----THNRN 2307
>gi|9966885 tumor endothelial marker 1 precursor [Homo sapiens]
Length = 757
Score = 32.3 bits (72), Expect = 0.41
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 28 FPLHPPPSFVLSLSAAGSNVPALD-LPPHGR---TT--AQLSPRGSTAQKVRQRPCQLPS 81
FP H P F + A L +PP+ TT AQL P+ A +R + QLP
Sbjct: 525 FPAHQSPMFPDTRVAGTQTTTHLPGIPPNHAPLVTTLGAQLPPQAPDALVLRTQATQLPI 584
Query: 82 LPGLFKGLKAKGDDEFIP--QVLV---VRPGEYQTLLPARGPTS 120
+P L P Q+ V +P TLLP++ PT+
Sbjct: 585 IPTAQPSLTTTSRSPVSPAHQISVPAATQPAALPTLLPSQSPTN 628
>gi|32880203 cadherin-like 24 isoform 2 [Homo sapiens]
Length = 781
Score = 32.0 bits (71), Expect = 0.53
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 29 PLHPPPSFVLSLSAAGSNVPALDLPPHGRTTAQLSPRGSTAQKVRQRPCQLPS 81
PL PP F++ + N P L P+ T ++S G++ +V PS
Sbjct: 129 PLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPS 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,151,440
Number of Sequences: 37866
Number of extensions: 742385
Number of successful extensions: 3134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 3051
Number of HSP's gapped (non-prelim): 198
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.