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Search of human proteins with 113411491
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113411491 PREDICTED: hypothetical protein [Homo sapiens]
(163 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113411491 PREDICTED: hypothetical protein [Homo sapiens] 342 6e-95
gi|169162687 PREDICTED: hypothetical protein [Homo sapiens] 342 6e-95
gi|169162689 PREDICTED: hypothetical protein [Homo sapiens] 340 3e-94
gi|169162691 PREDICTED: hypothetical protein [Homo sapiens] 339 7e-94
gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Hom... 37 0.010
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.049
gi|12751477 forkhead box L2 [Homo sapiens] 34 0.049
gi|153792074 proline rich 12 [Homo sapiens] 34 0.064
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 33 0.084
gi|41352718 deltex homolog 1 [Homo sapiens] 33 0.084
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239752511 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.11
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.11
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 33 0.14
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 32 0.19
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 32 0.24
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 32 0.24
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 32 0.24
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 32 0.24
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 32 0.24
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 32 0.24
gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] 32 0.32
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 32 0.32
gi|75677325 kinase suppressor of ras [Homo sapiens] 32 0.32
gi|42544243 dynamin 3 isoform a [Homo sapiens] 32 0.32
gi|209915561 dynamin 3 isoform b [Homo sapiens] 32 0.32
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 31 0.41
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 31 0.41
gi|91208420 bassoon protein [Homo sapiens] 31 0.41
>gi|113411491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 342 bits (878), Expect = 6e-95
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA
Sbjct: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
Query: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG
Sbjct: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
Query: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR
Sbjct: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
>gi|169162687 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 342 bits (878), Expect = 6e-95
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA
Sbjct: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
Query: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG
Sbjct: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
Query: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR
Sbjct: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
>gi|169162689 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 340 bits (872), Expect = 3e-94
Identities = 162/163 (99%), Positives = 162/163 (99%)
Query: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA
Sbjct: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
Query: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTS GFHVRRPNAPRLPPPIPPFG
Sbjct: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSRGFHVRRPNAPRLPPPIPPFG 120
Query: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR
Sbjct: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
>gi|169162691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 163
Score = 339 bits (869), Expect = 7e-94
Identities = 161/163 (98%), Positives = 162/163 (99%)
Query: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWA 60
MGVSASGGGDGERVSQPWRAAQKRRPGPW+PRSCALTHATGSHLGSGPLGWASARDSSWA
Sbjct: 1 MGVSASGGGDGERVSQPWRAAQKRRPGPWSPRSCALTHATGSHLGSGPLGWASARDSSWA 60
Query: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFG 120
VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTS GFHVRRPNAPRLPPPIPPFG
Sbjct: 61 VFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSRGFHVRRPNAPRLPPPIPPFG 120
Query: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR
Sbjct: 121 LAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
>gi|205361109 multiple C2 domains, transmembrane 1 isoform L [Homo
sapiens]
Length = 999
Score = 36.6 bits (83), Expect = 0.010
Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 10/149 (6%)
Query: 1 MGVSAS-GGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSW 59
+GV S GGG G R A P P P A GS GS G+ +
Sbjct: 30 LGVGRSKGGGGGRAGGPERRTADTPSPSPPPPVGTGNAPARGSGAGSRWSGFKKRKQVLD 89
Query: 60 AVFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPF 119
VF S LC P PL PG RA ++L +R P + P
Sbjct: 90 RVFS--SSQPNLCCSSPEPL---EPG----GAGRAEQGSTLRRRIREHLLPAVKGPAAAS 140
Query: 120 GLAGATFATSASQPFLVRCSPRSHSLSAA 148
G AG T S S S SLS++
Sbjct: 141 GAAGGTPPGGRSPDSAPSSSSASSSLSSS 169
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 35.0 bits (79), Expect = 0.029
Identities = 32/104 (30%), Positives = 36/104 (34%), Gaps = 18/104 (17%)
Query: 11 GERVSQPWRAAQKRRPGPWAPRS---CALTHATGSHLGSGPLGWASARDSSWAV----FP 63
G +P A ++R G R AL HL S LG R WA+ FP
Sbjct: 627 GTEAGRPRLAGERRGAGDGRARDFRRIALAAPQFPHLESNTLGRGRPRPGDWALQATDFP 686
Query: 64 GLDSPAR-----------LCAGFPLPLAGRRPGCRLARFSRAPA 96
PA AGF P A R PG L S PA
Sbjct: 687 DATKPALGAALRRGPIVGPAAGFAAPAAERDPGAELNHLSALPA 730
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 117 PPFGLAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMA 161
PP L G T ATSA++P P S+ +S + + + +PPM+
Sbjct: 62 PPLMLPGPTIATSATRP-----PPASNEVSTSVLSSTITPAPPMS 101
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 34.3 bits (77), Expect = 0.049
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 67 SPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGLAGATF 126
+PA G P P + PG + RAP T+ G P AP P +P L+ A+
Sbjct: 766 APAAASPGPPPPASP--PGAPAS--PRAPRTSPYG---GLPAAPLAGPALPARRLSRASR 818
Query: 127 ATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMAAR 163
SASQP L +P + + + RL P AAR
Sbjct: 819 PLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAAR 855
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 34.3 bits (77), Expect = 0.049
Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 14 VSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAVFPGLDSPARLCA 73
++ W Q P P+A SC + A A+A ++ A PG A +
Sbjct: 200 LNNSWPLPQPPSPMPYA--SCQMAAAA-----------AAAAAAAAAAGPGSPGAAAVVK 246
Query: 74 GFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIP-PFGLAGATFATSASQ 132
G P A P R+ + P + + P A PPP P P A A +A
Sbjct: 247 GLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHPHAHHLHAAAAPP 306
Query: 133 PFLVRCSPRSHSLSAAKPTGQVRLSPPMAA 162
P +P H +AA P GQ+ + P A
Sbjct: 307 P-----APPHHG-AAAPPPGQLSPASPATA 330
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 33.9 bits (76), Expect = 0.064
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 92 SRAPATTSLGFHVRRP----NAPRLPPPIPPFGLAGATFATSASQPFLVRCSPRSHSLSA 147
S +P+ + +G H+ P AP+ PPP PP P + RSH L
Sbjct: 811 SPSPSASKVGVHLLEPATRDGAPQPPPPPPP---------PPPPMPLQLEAHLRSHGLEP 861
Query: 148 AKPTGQVR----LSPPMA 161
A P+ ++R L PP A
Sbjct: 862 AAPSPRLRPEESLDPPGA 879
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.084
Identities = 31/104 (29%), Positives = 35/104 (33%), Gaps = 18/104 (17%)
Query: 11 GERVSQPWRAAQKRRPGPWAPRS---CALTHATGSHLGSGPLGWASARDSSWAV----FP 63
G +P A ++R G R AL HL S LG R W + FP
Sbjct: 627 GTEAGRPRLAGERRGAGDGRARDFRRIALAAPQFPHLESNTLGRGRPRPGDWTLQATDFP 686
Query: 64 GLDSPAR-----------LCAGFPLPLAGRRPGCRLARFSRAPA 96
PA AGF P A R PG L S PA
Sbjct: 687 DATKPALGAALRRGPIVGPAAGFAAPAAERDPGAELNHLSALPA 730
Score = 29.6 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 117 PPFGLAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPPMA 161
PP L G T ATSA++P P S+ +S + + + +PPM+
Sbjct: 62 PPLMLPGPTIATSATRP-----PPASNEVSTSVLSSTITPAPPMS 101
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 33.5 bits (75), Expect = 0.084
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 86 CRLARFSRAPATTSLGFHVRR-PNAPRLPPPIPPFGLAGATFATSASQPFLVRCSPRSHS 144
C L +RA + L R+ P AP LPPP PP G GA A S F +
Sbjct: 205 CLLVNSTRAASNAILASQRRKAPPAPPLPPPPPPGGPPGA-LAVRPSATF------TGAA 257
Query: 145 LSAAKPTGQVRLSPPMAA 162
L AA G +PP A
Sbjct: 258 LWAAPAAGPAEPAPPPGA 275
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 33.1 bits (74), Expect = 0.11
Identities = 33/126 (26%), Positives = 41/126 (32%), Gaps = 22/126 (17%)
Query: 2 GVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAV 61
GV +GG + +R P P S GS L + + WA
Sbjct: 131 GVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAA 190
Query: 62 FPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGL 121
PG +P RPG AP T +GF V P A PP +
Sbjct: 191 MPGPGAP--------------RPG--------APGTWPVGFAVAAPPAAAASVAPPPPAV 228
Query: 122 AGATFA 127
AGA A
Sbjct: 229 AGAPAA 234
>gi|239752511 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 609
Score = 33.1 bits (74), Expect = 0.11
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 93 RAPATTSLGFHVRRPNAPRLPPPIPPFGLAGATFATSASQPFLVRCSPRSHSLSAAKPTG 152
R P SL RP+ R+PP A+ + S+ L R PR+ SL+ PT
Sbjct: 438 RTPPMASLTRRPPRPSLSRMPPT--------ASLTRTPSRASLTRSPPRA-SLTRTPPTA 488
Query: 153 QVRLSPPMAA 162
+ SPP A+
Sbjct: 489 SLTRSPPTAS 498
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 33.1 bits (74), Expect = 0.11
Identities = 39/136 (28%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 11 GERVSQPWRAAQKRRPGPWAPRSCALTHA-TGSHLGSGPLGWASARDSSWAVFPGLDSPA 69
G R + + + P P +P +L A T +H SG G R SS PGL+ P
Sbjct: 2013 GSRAAMSLQEEAEPTPSPPSPNRESLALALTAAHSRSGSEGRTPERASS----PGLNKPL 2068
Query: 70 RLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGLAGATFATS 129
P P G C + S A SLG R P P GL G A+
Sbjct: 2069 LATGDSPAPSVGDLAACAPSPTSAAHMPCSLGPLPRED--PLTSPSRAQGGLGGQLPASP 2126
Query: 130 ASQ-----PFLVRCSP 140
+ + L+ CSP
Sbjct: 2127 SCRDPPGPQQLLACSP 2142
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 32.7 bits (73), Expect = 0.14
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 76 PLPLAGRRPGCRLARFSRAPAT------TSLGFHVRRPNAPRLPPPIP 117
PLP +P R + SR PA T L V P P LPPP+P
Sbjct: 761 PLPFHDAKPSSRSSDGSRGPAQALAKPLTQLSHPVPPPPPPPLPPPVP 808
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 32.3 bits (72), Expect = 0.19
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 24 RRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAVFPGLDSPARLCAGFPLPLAGRR 83
R P W+ + A +HL + LG + R S A FP L S R FP P R
Sbjct: 126 RSPAAWSDPGLRVPPAARAHLDNSSLGMSQPRPSPGA-FPHLSSEPRTPRAFPEP-GSRV 183
Query: 84 PGCRL 88
P RL
Sbjct: 184 PPSRL 188
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 32.0 bits (71), Expect = 0.24
Identities = 38/113 (33%), Positives = 43/113 (38%), Gaps = 23/113 (20%)
Query: 6 SGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAVFPGL 65
SG G+R S RA P P AP S + + ++GS G G S A P L
Sbjct: 26 SGVQGGQRNSTSARAPP---PPPLAPSSSSSSGSSGSSGGGG---------SGSAGQPTL 73
Query: 66 DSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPP 118
S L G A R G RA T R P P LPPP PP
Sbjct: 74 GS--MLAVGSAARRASERAG------GRAGGTA---LRAREPPPPLLPPPSPP 115
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 32.0 bits (71), Expect = 0.24
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 27/125 (21%)
Query: 7 GGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAVFPGLD 66
GG +PWR A +RR P+ C W AR+S A L
Sbjct: 131 GGASRPLAGEPWREAARRR-----PQQCP--------------QWGRARESRSA---ALA 168
Query: 67 SPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGLAGATF 126
SP + P A R PG R R + G R PR+ PP P G +G
Sbjct: 169 SPR--VSNAPTTPASRNPGLRAQ--ERQSGRRAAGGGGARAEPPRV-PPCRPAGCSGGNR 223
Query: 127 ATSAS 131
+ A+
Sbjct: 224 SRRAA 228
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 32.0 bits (71), Expect = 0.24
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 64 GLDSPARLC--AGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGL 121
GL + ++LC + P+P P RL S A + RP +P P I P
Sbjct: 10 GLVTKSQLCLWSREPVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPSAPRSIAPARP 69
Query: 122 A------GATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPP 159
G A A QP R PR SL P+ + R PP
Sbjct: 70 GARPPRPGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPP 113
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 32.0 bits (71), Expect = 0.24
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 8/104 (7%)
Query: 64 GLDSPARLC--AGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPPPIPPFGL 121
GL + ++LC + P+P P RL S A + RP +P P I P
Sbjct: 10 GLVTKSQLCLWSREPVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPSAPRSIAPARP 69
Query: 122 A------GATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLSPP 159
G A A QP R PR SL P+ + R PP
Sbjct: 70 GARPPRPGRPLAPRARQPVPHRAVPRQGSLREPLPSRRGRRGPP 113
>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
Length = 1385
Score = 32.0 bits (71), Expect = 0.24
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 53 SARDSSWAVFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRL 112
S R +SW P L+ P A + R P ++ +RA ++R P++ +
Sbjct: 1231 SPRSNSWRQPPWLNQPTGFYASSSVQDFSRPPPQLVSTSNRA--------YMRNPSSS-V 1281
Query: 113 PPPIPPFGLAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVRLS 157
PPP T + P +PRSHS SA++ Q+R S
Sbjct: 1282 PPPSAGSVKTSTTGVATTQSP-----TPRSHSPSASQSGSQLRNS 1321
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 32.0 bits (71), Expect = 0.24
Identities = 40/139 (28%), Positives = 49/139 (35%), Gaps = 11/139 (7%)
Query: 2 GVSASGGGDGERVSQPWRAAQKRRPGPWAP----RSCALTHATGSHLGSGPLGWASARDS 57
GV A+G G + P AQ+ P P P + A L + LG A D
Sbjct: 20 GVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRLALDQLSALGLGGAGDTDE 79
Query: 58 SWAVFPGLDSPARLCAGF---PLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLPP 114
A G + G P+P G G A + APA + PNA PP
Sbjct: 80 EGAAGDGAAAAGGADGGAAPEPVPPDGPEAG---APPTLAPAVAPGSLPLLDPNASP-PP 135
Query: 115 PIPPFGLAGATFATSASQP 133
P PP FA A P
Sbjct: 136 PPPPRPSPPDVFAGFAPHP 154
>gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]
Length = 1349
Score = 31.6 bits (70), Expect = 0.32
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 53 SARDSSWAVFPGLDSPARLCAGFPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRL 112
S R +SW P L+ P A + R P ++ +RA ++R P++ +
Sbjct: 1182 SPRSNSWRQPPWLNQPTGFYASSSVQDFSRPPPQLVSTSNRA--------YMRNPSSS-V 1232
Query: 113 PPPIPPFGLAGATFATSASQPFLVRCSPRSHSLSAAKPTGQVR 155
PPP T + P +PRSHS SA++ Q+R
Sbjct: 1233 PPPSAGSVKTSTTGVATTQSP-----TPRSHSPSASQSGSQLR 1270
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 31.6 bits (70), Expect = 0.32
Identities = 49/197 (24%), Positives = 68/197 (34%), Gaps = 39/197 (19%)
Query: 2 GVSASGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHATGSHLGSGPLGWASARDSSWAV 61
G +A G G QP R + PG AP +HL GP R ++
Sbjct: 87 GAAALGAG----AQQPRRRRLAQPPGSRAPLQVGGAPRRRAHLTGGPPRRRPPRLAAAHG 142
Query: 62 FPGLDSP-----------------ARLCAGFP-LPLAGR-RPGCRLAR--FSRAPATTSL 100
P ++P ARL G P P AG R GC R + P S
Sbjct: 143 LPASEAPGLRPDSARTRLRLRLASARLPRGLPPAPAAGLWRAGCTRLRPLLLQPPPMLSP 202
Query: 101 GF--------HVRRPN------APRLPPPIPPFGLAGATFATSASQPFLVRCSPRSHSLS 146
G H R + AP LPPP PP + + + + L + +L+
Sbjct: 203 GLAQSPGVELHARTLSLPAPSPAPCLPPPAPPAARTPSAHSPAHTHFTLTLAEAHTRALT 262
Query: 147 AAKPTGQVRLSPPMAAR 163
A+ G+ P + R
Sbjct: 263 PARGGGEGDPGPIVGGR 279
>gi|75677325 kinase suppressor of ras [Homo sapiens]
Length = 762
Score = 31.6 bits (70), Expect = 0.32
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 13/122 (10%)
Query: 6 SGGGDGERVSQPWRAAQKRRPGPWAPRSCALTHAT------GSHLGSGPLGWASARDSSW 59
+G G + W + RR P + L+ A+ S LG R S
Sbjct: 34 TGLGGEHKEDSSWSSLDARRESGSGPSTDTLSAASLPWPPGSSQLGRAGNSAQGPRSISV 93
Query: 60 AVFPGLDSPARLCAG------FPLPLAGRRPGCRLARFSRAPATTSLGFHVRRPNAPRLP 113
+ P DSP + PL +GR L F P T L H + PR P
Sbjct: 94 SALPASDSPTPSFSEGLSDTCIPLHASGRLTPRALHSFITPPTTPQLRRHTKL-KPPRTP 152
Query: 114 PP 115
PP
Sbjct: 153 PP 154
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 31.6 bits (70), Expect = 0.32
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 76 PLPLAGRRP--GCRLARFSR----APATTSLGFHVRRPNAPRLPPPIPPFGLAGATFATS 129
P P RRP LAR + APA S G H P P P P+PPF + +F
Sbjct: 766 PSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAP 825
Query: 130 ASQP 133
P
Sbjct: 826 PQVP 829
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 31.6 bits (70), Expect = 0.32
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 76 PLPLAGRRP--GCRLARFSR----APATTSLGFHVRRPNAPRLPPPIPPFGLAGATFATS 129
P P RRP LAR + APA S G H P P P P+PPF + +F
Sbjct: 762 PSPTTQRRPTLSAPLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPSSSDSFGAP 821
Query: 130 ASQP 133
P
Sbjct: 822 PQVP 825
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 0.41
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 108 NAPRLPPPIPPFGLAGATFATSASQPFLVRCSPRSHSLSAA 148
+AP L P PPFGL A+ A SAS +V + +S+S +++
Sbjct: 235 HAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSS 275
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 31.2 bits (69), Expect = 0.41
Identities = 32/92 (34%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 78 PLAGRRPGCRLARFSRAPATTSLGFHVRRPNAP--RLPP--PIPPFGLAGATFATSASQP 133
P G R G R + A GF VR P RLPP P PP A TS
Sbjct: 195 PSGGVRSGAG-HRAATAEHQLGAGFSVRNGPGPPARLPPAPPGPPLRPARPHNPTSRGPG 253
Query: 134 FLVRCSPRSHSLSAAKPTGQVR--LSPPMAAR 163
L+ C P S L P + R L+PP R
Sbjct: 254 RLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVR 285
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 0.41
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 81 GRRPGCRLARFSRAPATTSLGFHVRRPNA-PRLPPPIPPFGLAGATFATSASQPFLVRCS 139
G PG R A+ P LG H RP++ P P +P G G + SQP R S
Sbjct: 3659 GEEPGRRAAK----PHARDLGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQP--SRAS 3712
Query: 140 PRSHSLSAAKPTGQVRLSPPMA 161
H S +K + S P A
Sbjct: 3713 SAYHHASDSKKGSRQAHSGPAA 3734
Score = 30.0 bits (66), Expect = 0.92
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 18/118 (15%)
Query: 29 WAPRSCALTHATGSHLGSGPLGWASARDSSWAVFPGLDSPARLCAGFP-----LPLAGRR 83
W +C + A G + + P + + S A+ P SPA+ G P G +
Sbjct: 215 WLCLNCQMQRALGMDMTTAPRSKSQQQLHSPALSPA-HSPAKQPLGKPDQERSRGPGGPQ 273
Query: 84 PGCRLARFSRA-----PATTSLGFHVRR-------PNAPRLPPPIPPFGLAGATFATS 129
PG R A +RA PA + V R P P P PP G A A AT+
Sbjct: 274 PGSRQAETARATSVPGPAQAAAPPEVGRVSPQPPQPTKPSTAEPRPPAGEAPAKSATA 331
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,608,548
Number of Sequences: 37866
Number of extensions: 504158
Number of successful extensions: 2610
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 2485
Number of HSP's gapped (non-prelim): 259
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.