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Search of human proteins with 18201905
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18201905 glucose phosphate isomerase [Homo sapiens]
(558 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18201905 glucose phosphate isomerase [Homo sapiens] 1141 0.0
gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo sapi... 37 0.062
gi|12597633 RAN binding protein 17 [Homo sapiens] 32 1.2
gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens] 32 1.5
gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens] 32 1.5
gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens] 32 1.5
gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens] 32 1.5
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 30 7.6
gi|14249532 zinc finger protein 587 [Homo sapiens] 30 7.6
gi|112983683 zinc finger protein 417 [Homo sapiens] 30 7.6
gi|194272207 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|153792514 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|194272204 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|194272202 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|194272200 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|194272198 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|194272196 actin binding LIM protein family, member 2 isoform ... 29 10.0
gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens] 29 10.0
gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens] 29 10.0
gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens] 29 10.0
>gi|18201905 glucose phosphate isomerase [Homo sapiens]
Length = 558
Score = 1141 bits (2951), Expect = 0.0
Identities = 558/558 (100%), Positives = 558/558 (100%)
Query: 1 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV 60
MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV
Sbjct: 1 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLV 60
Query: 61 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP 120
TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP
Sbjct: 61 TEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMP 120
Query: 121 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR 180
EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR
Sbjct: 121 EVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPR 180
Query: 181 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA 240
VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA
Sbjct: 181 VWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVA 240
Query: 241 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA 300
KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA
Sbjct: 241 KHFVALSTNTTKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDNFEQLLSGA 300
Query: 301 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN 360
HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN
Sbjct: 301 HWMDQHFRTTPLEKNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESN 360
Query: 361 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL 420
GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL
Sbjct: 361 GKYITKSGTRVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGL 420
Query: 421 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT 480
HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT
Sbjct: 421 HHKILLANFLAQTEALMRGKSTEEARKELQAAGKSPEDLERLLPHKVFEGNRPTNSIVFT 480
Query: 481 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA 540
KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA
Sbjct: 481 KLTPFMLGALVAMYEHKIFVQGIIWDINSFDQWGVELGKQLAKKIEPELDGSAQVTSHDA 540
Query: 541 STNGLINFIKQQREARVQ 558
STNGLINFIKQQREARVQ
Sbjct: 541 STNGLINFIKQQREARVQ 558
>gi|27477109 itchy homolog E3 ubiquitin protein ligase [Homo
sapiens]
Length = 862
Score = 36.6 bits (83), Expect = 0.062
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 7 DPQFQKLQQWYREHR-SELNLRRLFDANKDRFNHF-SLTLNTNHGHILVDYSKNLVTEDV 64
DP+F W +E+ E +L F +K+ S L N G+ILV E+
Sbjct: 640 DPEFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENK---EEY 696
Query: 65 MRMLVDLAKSRGVEAARERMFNG 87
+RM+ + SRGVE + F G
Sbjct: 697 IRMVAEWRLSRGVEEQTQAFFEG 719
>gi|12597633 RAN binding protein 17 [Homo sapiens]
Length = 1088
Score = 32.3 bits (72), Expect = 1.2
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 33 NKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKS-RGVEAA 80
++D F +F L L +L ++ N EDV RML+ LA+ RG+ A
Sbjct: 682 DEDEFENFMLPLTVAFETVLQIFNNNFKQEDVKRMLIGLARDLRGIAFA 730
>gi|211938442 apolipoprotein L1 isoform c precursor [Homo sapiens]
Length = 380
Score = 32.0 bits (71), Expect = 1.5
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 119 MPEVNKVLDKMKSFCQRVRS---GDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYS 175
+ E ++ +++ +R+R+ G K + G TI +V++ + S +V L P++
Sbjct: 123 LKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFT 182
Query: 176 SGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKD 235
GG +L L P L I A+ T T T+ + K+W+ QA
Sbjct: 183 EGG----------------SLVLLEPGMELGITAALTGITSSTM---DYGKKWWTQAQ-- 221
Query: 236 PSAVAKHFVALSTNTTK-VKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 284
A V S + K V+EF +N+ F G Y L IG I
Sbjct: 222 ----AHDLVIKSLDKLKEVREF--LGENISNFLSLAGNTYQLTRGIGKDI 265
>gi|211938440 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 32.0 bits (71), Expect = 1.5
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 119 MPEVNKVLDKMKSFCQRVRS---GDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYS 175
+ E ++ +++ +R+R+ G K + G TI +V++ + S +V L P++
Sbjct: 141 LKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFT 200
Query: 176 SGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKD 235
GG +L L P L I A+ T T T+ + K+W+ QA
Sbjct: 201 EGG----------------SLVLLEPGMELGITAALTGITSSTM---DYGKKWWTQAQ-- 239
Query: 236 PSAVAKHFVALSTNTTK-VKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 284
A V S + K V+EF +N+ F G Y L IG I
Sbjct: 240 ----AHDLVIKSLDKLKEVREF--LGENISNFLSLAGNTYQLTRGIGKDI 283
>gi|21735616 apolipoprotein L1 isoform b precursor [Homo sapiens]
Length = 414
Score = 32.0 bits (71), Expect = 1.5
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 119 MPEVNKVLDKMKSFCQRVRS---GDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYS 175
+ E ++ +++ +R+R+ G K + G TI +V++ + S +V L P++
Sbjct: 157 LKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFT 216
Query: 176 SGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKD 235
GG +L L P L I A+ T T T+ + K+W+ QA
Sbjct: 217 EGG----------------SLVLLEPGMELGITAALTGITSSTM---DYGKKWWTQAQ-- 255
Query: 236 PSAVAKHFVALSTNTTK-VKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 284
A V S + K V+EF +N+ F G Y L IG I
Sbjct: 256 ----AHDLVIKSLDKLKEVREF--LGENISNFLSLAGNTYQLTRGIGKDI 299
>gi|21735614 apolipoprotein L1 isoform a precursor [Homo sapiens]
Length = 398
Score = 32.0 bits (71), Expect = 1.5
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 31/170 (18%)
Query: 119 MPEVNKVLDKMKSFCQRVRS---GDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYS 175
+ E ++ +++ +R+R+ G K + G TI +V++ + S +V L P++
Sbjct: 141 LKEFPRLKSELEDNIRRLRALADGVQKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFT 200
Query: 176 SGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKD 235
GG +L L P L I A+ T T T+ + K+W+ QA
Sbjct: 201 EGG----------------SLVLLEPGMELGITAALTGITSSTM---DYGKKWWTQAQ-- 239
Query: 236 PSAVAKHFVALSTNTTK-VKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSI 284
A V S + K V+EF +N+ F G Y L IG I
Sbjct: 240 ----AHDLVIKSLDKLKEVREF--LGENISNFLSLAGNTYQLTRGIGKDI 283
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 29.6 bits (65), Expect = 7.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGD 356
K+ LLAL W+++CF C+T +++ +Y+ + + + D
Sbjct: 159 KHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVPYCESD 201
>gi|14249532 zinc finger protein 587 [Homo sapiens]
Length = 575
Score = 29.6 bits (65), Expect = 7.6
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 336 HAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQT-GPIVWGEPGTNGQHAF--- 391
H+++P+ + R Y +S +Y++ S + DH GP GE G +
Sbjct: 225 HSVIPHQKLFTRDGCYVCSDCGKSFSRYVSFSNHQRDHTAKGPYDCGECGKSYSRKSSLI 284
Query: 392 -YQLIHQGTKMIPCD 405
+Q +H G PC+
Sbjct: 285 QHQRVHTGQTAYPCE 299
>gi|112983683 zinc finger protein 417 [Homo sapiens]
Length = 575
Score = 29.6 bits (65), Expect = 7.6
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 336 HAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVDHQT-GPIVWGEPGTNGQHAF--- 391
H+++P+ + R Y +S +Y++ S + DH GP GE G +
Sbjct: 225 HSVIPHQKLFTRDGCYVCSDCGKSFSRYVSFSNHQRDHTAKGPYDCGECGKSYSRKSSLI 284
Query: 392 -YQLIHQGTKMIPCD 405
+Q +H G PC+
Sbjct: 285 QHQRVHTGKTAYPCE 299
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|194272200 actin binding LIM protein family, member 2 isoform 3
[Homo sapiens]
Length = 572
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|194272196 actin binding LIM protein family, member 2 isoform 1
[Homo sapiens]
Length = 645
Score = 29.3 bits (64), Expect = 10.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDMESNGKYITKSGTRVD 372
KN L+AL W++ CF C++ L +Y+ + + + D Y K G R D
Sbjct: 161 KNGQALVALDKHWHLGCFKCKSCGKLLNAEYISKDGLPYCEAD------YHAKFGIRCD 213
>gi|51173715 actin-binding LIM protein 1 isoform c [Homo sapiens]
Length = 746
Score = 29.3 bits (64), Expect = 10.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDME 358
KN LLAL W++ CF C++ + +Y+ + A + + D +
Sbjct: 174 KNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQ 218
>gi|51173713 actin-binding LIM protein 1 isoform b [Homo sapiens]
Length = 718
Score = 29.3 bits (64), Expect = 10.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDME 358
KN LLAL W++ CF C++ + +Y+ + A + + D +
Sbjct: 174 KNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQ 218
>gi|51173711 actin-binding LIM protein 1 isoform a [Homo sapiens]
Length = 778
Score = 29.3 bits (64), Expect = 10.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 314 KNAPVLLALLGIWYINCFGCETHAMLPYDQYLHRFAAYFQQGDME 358
KN LLAL W++ CF C++ + +Y+ + A + + D +
Sbjct: 234 KNGQALLALDKQWHLGCFKCKSCGKVLTGEYISKDGAPYCEKDYQ 278
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,232,944
Number of Sequences: 37866
Number of extensions: 866077
Number of successful extensions: 2011
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2005
Number of HSP's gapped (non-prelim): 20
length of query: 558
length of database: 18,247,518
effective HSP length: 107
effective length of query: 451
effective length of database: 14,195,856
effective search space: 6402331056
effective search space used: 6402331056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.