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Search of human proteins with 18105056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18105056 vacuolar protein sorting 33A [Homo sapiens]
(596 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18105056 vacuolar protein sorting 33A [Homo sapiens] 1185 0.0
gi|119829191 vacuolar protein sorting 33B (yeast homolog)) [Homo... 290 2e-78
gi|18105063 vacuolar protein sorting 45A [Homo sapiens] 67 6e-11
gi|4507297 syntaxin binding protein 1 isoform a [Homo sapiens] 58 3e-08
gi|73760415 syntaxin binding protein 1 isoform b [Homo sapiens] 55 1e-07
gi|118600975 syntaxin binding protein 3 [Homo sapiens] 52 2e-06
gi|188528901 syntaxin binding protein 2 isoform b [Homo sapiens] 50 6e-06
gi|188528689 syntaxin binding protein 2 isoform a [Homo sapiens] 50 6e-06
gi|33469966 vesicle transport-related protein isoform a [Homo sa... 44 6e-04
gi|33469978 vesicle transport-related protein isoform b [Homo sa... 43 0.001
gi|119226220 membrane-spanning 4-domains, subfamily A, member 14... 35 0.20
gi|119226217 membrane-spanning 4-domains, subfamily A, member 14... 35 0.20
gi|208431778 phosphatidylinositol-4-phosphate 5-kinase, type I, ... 34 0.44
gi|208431776 phosphatidylinositol-4-phosphate 5-kinase, type I, ... 34 0.44
gi|4505815 phosphatidylinositol-4-phosphate 5-kinase, type I, al... 34 0.44
gi|20149560 syntaxin 4 [Homo sapiens] 33 0.74
gi|4504705 inositol polyphosphate-4-phosphatase, type 1 isoform ... 32 1.7
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 31 2.8
gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens] 30 6.3
gi|31542785 sec1 family domain containing 2 [Homo sapiens] 30 6.3
gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo s... 30 8.2
gi|4505343 nuclear cap binding protein subunit 1, 80kDa [Homo sa... 30 8.2
gi|50345870 DENN/MADD domain containing 3 [Homo sapiens] 30 8.2
>gi|18105056 vacuolar protein sorting 33A [Homo sapiens]
Length = 596
Score = 1185 bits (3066), Expect = 0.0
Identities = 596/596 (100%), Positives = 596/596 (100%)
Query: 1 MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60
MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV
Sbjct: 1 MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEV 60
Query: 61 EKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLL 120
EKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLL
Sbjct: 61 EKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLL 120
Query: 121 CEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLM 180
CEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLM
Sbjct: 121 CEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLM 180
Query: 181 TLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPL 240
TLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPL
Sbjct: 181 TLQALYGTIPQIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPL 240
Query: 241 ATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIR 300
ATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIR
Sbjct: 241 ATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIR 300
Query: 301 DKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAEL 360
DKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAEL
Sbjct: 301 DKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAEL 360
Query: 361 IKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGL 420
IKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGL
Sbjct: 361 IKDVTTSEDFFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGL 420
Query: 421 KQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQ 480
KQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQ
Sbjct: 421 KQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQ 480
Query: 481 NPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPG 540
NPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPG
Sbjct: 481 NPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPG 540
Query: 541 ENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALMEKPF 596
ENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALMEKPF
Sbjct: 541 ENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALMEKPF 596
>gi|119829191 vacuolar protein sorting 33B (yeast homolog)) [Homo
sapiens]
Length = 617
Score = 290 bits (743), Expect = 2e-78
Identities = 196/620 (31%), Positives = 319/620 (51%), Gaps = 56/620 (9%)
Query: 11 NLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNR 70
+ ++L+ R +L L++ G K + + L P IA S+LK+HEV+K++ ++ N+
Sbjct: 14 DFSMLKRLARDQLIYLLEQLPGKKDLFIEADLMSPLDRIANVSILKQHEVDKLYKVE-NK 72
Query: 71 LPAADVKNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGV 130
+ + + F VRPR++ M IA V ++ G TR + ++F P++ CE L++ G+
Sbjct: 73 PALSSNEQLCFLVRPRIKNMRYIASLVNADKLAGRTRKYKVIFSPQKFYACEMVLEEEGI 132
Query: 131 LGSFIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIP 190
G + +E++ L+P D DLLSME F++ +LEGDQ + A+ L L LYG P
Sbjct: 133 YGD-VSCDEWAFSLLPLDVDLLSMELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFP 191
Query: 191 QIFGKGECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEGLI 250
+G G CA+ + ++ E G P ++ LLDR+VD +T L +Q+ YEGL+
Sbjct: 192 NCYGIGRCAKMAYELWRNLEEEEDGETKGRRPEIGHIFLLDRDVDFVTALCSQVVYEGLV 251
Query: 251 DEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSV 310
D+ + I+ V PE + K + K+ LN+ ++++ EIR+++F+ V
Sbjct: 252 DDTFRIKCGSVDFGPEVTSSDK-----------SLKVLLNAEDKVFNEIRNEHFSNVFGF 300
Query: 311 LSKKAKIISAAFEERHNAKTVGEIKQFVSQ-LPHMQAARGSLANHTSIAELIKDVTTSED 369
LS+KA+ + A + +R + ++K FVSQ L ++ L+ H E I T +D
Sbjct: 301 LSQKARNLQAQY-DRRRGMDIKQMKNFVSQELKGLKQEHRLLSLHIGACESIMKKKTKQD 359
Query: 370 FFDKLTVEQEFMSGIDTDKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYYK 429
F + + E + G + + +YIE+ I ++ S I+ LRL+CL S+ +GL K K
Sbjct: 360 FQELIKTEHALLEGFNIRESTSYIEEHIDRQVSPIESLRLMCLLSITENGLIPKDYRSLK 419
Query: 430 REILQTYGYEHILTLHNLEKAGLLKPQTGG------------------------------ 459
+ LQ+YG EH+LT NL +AGLL Q G
Sbjct: 420 TQYLQSYGPEHLLTFSNLRRAGLLTEQAPGDTLTAVESKVSKLVTDKAAGKITDAFSSLA 479
Query: 460 -RNNYPTIRKTLRLWMDDVNEQN---PTDISYVYSG-YAPLSVR-LAQLLSRPGWRSIEE 513
R+N+ I K L L E + P D++YV+ G Y PLS R + Q+L R W+ ++E
Sbjct: 480 KRSNFRAISKKLNLIPRVDGEYDLKVPRDMAYVFGGAYVPLSCRIIEQVLERRSWQGLDE 539
Query: 514 VLRILPGPHFEERQPLPTGLQKKRQPGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTE 573
V+R+L F + K R+ L+ FLGG TF+EI+ALRFL + + G
Sbjct: 540 VVRLLNCSDFAFTDMTK---EDKASSESLRLILVVFLGGCTFSEISALRFLGR--EKGYR 594
Query: 574 YVIATTKLMNGTSWIEALME 593
++ TT + N +EA+ E
Sbjct: 595 FIFLTTAVTNSARLMEAMSE 614
>gi|18105063 vacuolar protein sorting 45A [Homo sapiens]
Length = 570
Score = 66.6 bits (161), Expect = 6e-11
Identities = 82/375 (21%), Positives = 148/375 (39%), Gaps = 37/375 (9%)
Query: 18 AVRRELREFL-DKCAGSKAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADV 76
AV++ + + + D G K ++ D+ TG ++ S + + EV +
Sbjct: 6 AVKQYISKMIEDSGPGMKVLLMDKETTGIVSMVYTQSEILQKEVYLFERIDSQNREIMKH 65
Query: 77 KNIIFFVRPRLELMDIIAENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLGVLGS--- 133
I F+RP E +D I + + R P + I F+ +++ + +K L
Sbjct: 66 LKAICFLRPTKENVDYIIQEL-----RRPK--YTIYFIYFSNVISKSDVKSLAEADEQEV 118
Query: 134 FIHREEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIF 193
+E+ D I + L S+ G + D L +GL L P I
Sbjct: 119 VAEVQEFYGDYIAVNPHLFSLNILGCCQG--RNWDPAQLSRTTQGLTALLLSLKKCPMIR 176
Query: 194 GK---------GECARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQL 244
+ EC +QV + F + + P+ LL+LDR D +TPL Q
Sbjct: 177 YQLSSEAAKRLAECVKQVITKEYEL---FEFRRTEVPPL---LLILDRCDDAITPLLNQW 230
Query: 245 TYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNF 304
TY+ ++ E+ GI N+ + L K + L E + N+ +AEI
Sbjct: 231 TYQAMVHELLGINNNRIDLSRVPGISKDLRE--VVLSAENDEFYANNMYLNFAEIGSNIK 288
Query: 305 NAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDV 364
N + KK K E+ +++ ++K FV P + G+++ H ++ + +
Sbjct: 289 NLMEDFQKKKPK-------EQQKLESIADMKAFVENYPQFKKMSGTVSKHVTVVGELSRL 341
Query: 365 TTSEDFFDKLTVEQE 379
+ + + VEQE
Sbjct: 342 VSERNLLEVSEVEQE 356
>gi|4507297 syntaxin binding protein 1 isoform a [Homo sapiens]
Length = 603
Score = 57.8 bits (138), Expect = 3e-08
Identities = 96/490 (19%), Positives = 192/490 (39%), Gaps = 66/490 (13%)
Query: 139 EYSLDLIPFDGDLLSMESEGAFKECY----LEGDQTSLYHAAKGLMTLQALYGTIPQIFG 194
E ++ +P++ + S++S +F+ Y + L A+ + TL A P +
Sbjct: 132 EINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRY 191
Query: 195 KGE------CARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEG 248
+GE A+ + + + K + LL+LDR D +P+ +LT++
Sbjct: 192 RGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQA 251
Query: 249 LIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVG 308
+ ++ I+N K + G G K++ L+ ++L+ +R K+ V
Sbjct: 252 MSYDLLPIENDVYKY-------ETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVS 300
Query: 309 SVLSKKAKIISAAFEERHNAK-TVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDVTTS 367
+++ K S++ K T+ ++ Q + ++P Q + H +AE +
Sbjct: 301 QEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAE--DCMKHY 358
Query: 368 EDFFDKL-TVEQEFMSGIDT------DKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGL 420
+ DKL VEQ+ G D D + + + S +R++ L +G+
Sbjct: 359 QGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGI 418
Query: 421 KQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIR-KTLRLWMDDVNE 479
++ L+ + I+T N+ G+ P + TLR +
Sbjct: 419 TEENLNKLIQHAQIPPEDSEIIT--NMAHLGV-----------PIVTDSTLRRRSKPERK 465
Query: 480 QNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGL------ 533
+ ++ +Y S + P+ + + +IE+ L P+ R
Sbjct: 466 ERISEQTYQLSRWTPIIKDIME-------DTIEDKLDTKHYPYISTRSSASFSTTAVSAR 518
Query: 534 ----QKKRQPGENRV---TLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTS 586
K + PGE R +IF LGGV+ E+ ++Q +G E +I +T ++ T
Sbjct: 519 YGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPTK 577
Query: 587 WIEALMEKPF 596
++ L F
Sbjct: 578 FLMDLRHPDF 587
>gi|73760415 syntaxin binding protein 1 isoform b [Homo sapiens]
Length = 594
Score = 55.5 bits (132), Expect = 1e-07
Identities = 94/485 (19%), Positives = 190/485 (39%), Gaps = 66/485 (13%)
Query: 139 EYSLDLIPFDGDLLSMESEGAFKECY----LEGDQTSLYHAAKGLMTLQALYGTIPQIFG 194
E ++ +P++ + S++S +F+ Y + L A+ + TL A P +
Sbjct: 132 EINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRY 191
Query: 195 KGE------CARQVANMMIRMKREFTGSQNSIFPVFDNLLLLDRNVDLLTPLATQLTYEG 248
+GE A+ + + + K + LL+LDR D +P+ +LT++
Sbjct: 192 RGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQA 251
Query: 249 LIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVG 308
+ ++ I+N K + G G K++ L+ ++L+ +R K+ V
Sbjct: 252 MSYDLLPIENDVYKY-------ETSGIG----EARVKEVLLDEDDDLWIALRHKHIAEVS 300
Query: 309 SVLSKKAKIISAAFEERHNAK-TVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDVTTS 367
+++ K S++ K T+ ++ Q + ++P Q + H +AE +
Sbjct: 301 QEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAE--DCMKHY 358
Query: 368 EDFFDKL-TVEQEFMSGIDT------DKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGL 420
+ DKL VEQ+ G D D + + + S +R++ L +G+
Sbjct: 359 QGTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGI 418
Query: 421 KQKVLDYYKREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIR-KTLRLWMDDVNE 479
++ L+ + I+T N+ G+ P + TLR +
Sbjct: 419 TEENLNKLIQHAQIPPEDSEIIT--NMAHLGV-----------PIVTDSTLRRRSKPERK 465
Query: 480 QNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGL------ 533
+ ++ +Y S + P+ + + +IE+ L P+ R
Sbjct: 466 ERISEQTYQLSRWTPIIKDIME-------DTIEDKLDTKHYPYISTRSSASFSTTAVSAR 518
Query: 534 ----QKKRQPGENRV---TLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTS 586
K + PGE R +IF LGGV+ E+ ++Q +G E +I +T ++
Sbjct: 519 YGHWHKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPQK 577
Query: 587 WIEAL 591
++ L
Sbjct: 578 LLDTL 582
>gi|118600975 syntaxin binding protein 3 [Homo sapiens]
Length = 592
Score = 52.0 bits (123), Expect = 2e-06
Identities = 104/598 (17%), Positives = 225/598 (37%), Gaps = 82/598 (13%)
Query: 34 KAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDII 93
K ++ DE+ T + + L E + + + NR P +K ++F+ P + +D
Sbjct: 33 KIMLLDEFTTKLLASCCKMTDLLEEGITVVENIYKNREPVRQMK-ALYFITPTSKSVDCF 91
Query: 94 AENVLSEDRRGPTRDFHILFVPRRSLLCEQRL--KDLGVLGSFIHR-EEYSLDLIPFDGD 150
+ S+ + +I F C L K I R +E ++ IP +
Sbjct: 92 LHDFASKSEN-KYKAAYIYFTD----FCPDNLFNKIKASCSKSIRRCKEINISFIPHESQ 146
Query: 151 LLSMESEGAFKECY------LEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVAN 204
+ +++ AF CY +G + A ++T+ A P + K + +
Sbjct: 147 VYTLDVPDAFYYCYSPDPGNAKGKDAIMETMADQIVTVCATLDENPGVRYKSKPLDNASK 206
Query: 205 M--MIRMKRE--FTGSQNSIFP--VFDNLLLLDRNVDLLTPLATQLTYEGLIDEIYGIQN 258
+ ++ K E + + S+ LL++DR D ++ + +LT++ +
Sbjct: 207 LAQLVEKKLEDYYKIDEKSLIKGKTHSQLLIIDRGFDPVSTVLHELTFQAM--------- 257
Query: 259 SYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKII 318
+Y LP E K + DG + K+ L ++L+ IR ++ V + K K I
Sbjct: 258 AYDLLPIENDTYKYKTDG------KEKEAILEEEDDLWVRIRHRHIAVVLEEIPKLMKEI 311
Query: 319 SAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKL-TVE 377
S+ + ++ + Q + ++PH + H ++AE + + +KL E
Sbjct: 312 SSTKKATEGKTSLSALTQLMKKMPHFRKQITKQVVHLNLAE--DCMNKFKLNIEKLCKTE 369
Query: 378 QEFMSGIDT------DKVNNYIEDCIAQKHSLIKVLRLVCLQSVCNSGLKQKVLDYY--- 428
Q+ G D D + + + + H +R + L +G ++ LD
Sbjct: 370 QDLALGTDAEGQKVKDSMRVLLPVLLNKNHDNCDKIRAILLYIFSINGTTEENLDRLIQN 429
Query: 429 -----KREILQTYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIRKT--LRLWMDDVNEQN 481
+ ++++ + Y + + ++ L+ + R T ++ M+D +
Sbjct: 430 VKIENESDMIRNWSYLGVPIVPQSQQGKPLRKDRSAEETFQLSRWTPFIKDIMEDAIDNR 489
Query: 482 PTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLPTGLQKKRQPGE 541
+ Y P W G ++P L+ ++ +
Sbjct: 490 LDSKEWPYCSQCPAV-----------WNG--------SGAVSARQKPRANYLEDRKNGSK 530
Query: 542 NRVTLIFFLGGVTFAEIAALRFLSQLEDG-----GTEYVIATTKLMNGTSWIEALMEK 594
++F +GG+T++E+ +SQ G+ +V+ KL++ + +K
Sbjct: 531 ---LIVFVIGGITYSEVRCAYEVSQAHKSCEVIIGSTHVLTPKKLLDDIKMLNKPKDK 585
>gi|188528901 syntaxin binding protein 2 isoform b [Homo sapiens]
Length = 590
Score = 50.1 bits (118), Expect = 6e-06
Identities = 93/487 (19%), Positives = 194/487 (39%), Gaps = 70/487 (14%)
Query: 138 EEYSLDLIPFDGDLLSMESEGAFKECYL----EGDQTSLYHAAKGLMTLQALYGTIPQI- 192
+E L +P++ + S+++ + Y E L A+ + TL A P I
Sbjct: 128 KEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAEERTRQLEVLAQQIATLCATLQEYPAIR 187
Query: 193 FGKG-ECARQVANMMIRMKREFTGSQNSIFP----VFDNLLLLDRNVDLLTPLATQLTYE 247
+ KG E Q+A+ ++ F S+ LL++DR D ++PL +LT++
Sbjct: 188 YRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQ 247
Query: 248 GLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAV 307
+ ++ I+ + + ++ K + L+ ++L+ E+R + V
Sbjct: 248 AMAYDLLDIEQDTYRYETTGLSEARE-----------KAVLLDEDDDLWVELRHMHIADV 296
Query: 308 GSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIA-ELIKDVTT 366
+++ + + + + ++ Q + ++P Q + H +A + +K
Sbjct: 297 SKKVTELLRTFCESKRLTTDKANIKDLSQILKKMPQYQKELNKYSTHLHLADDCMKHFKG 356
Query: 367 SEDFFDKL-TVEQEFMSGIDT--DKVNNYIE-------DCIAQKHSLIKVLRLVCLQSVC 416
S +KL +VEQ+ G D +K+ + ++ D + I+VL L L
Sbjct: 357 S---VEKLCSVEQDLAMGSDAEGEKIKDSMKLIVPVLLDAAVPAYDKIRVLLLYIL---- 409
Query: 417 NSGLKQKVLDYYKREILQTYGYE-HILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMD 475
L+ V + +++Q + H + NLE+ G GG + R+
Sbjct: 410 ---LRNGVSEENLAKLIQHANVQAHSSLIRNLEQLGGTVTNPGGSGTSSRLEPRERM--- 463
Query: 476 DVNEQNPTDISYVYSGYAP-----LSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLP 530
PT Y S + P + + L R W + + P P + +
Sbjct: 464 -----EPT---YQLSRWTPVIKDVMEDAVEDRLDRNLWPFVSD-----PAPTASSQAAVS 510
Query: 531 T--GLQKKRQPG-ENRV---TLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNG 584
G K + G E R +++ +GGV +E+ A +++ +G E +I ++ ++
Sbjct: 511 ARFGHWHKNKAGIEARAGPRLIVYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTP 570
Query: 585 TSWIEAL 591
T +++ L
Sbjct: 571 TRFLDDL 577
>gi|188528689 syntaxin binding protein 2 isoform a [Homo sapiens]
Length = 593
Score = 50.1 bits (118), Expect = 6e-06
Identities = 93/487 (19%), Positives = 194/487 (39%), Gaps = 70/487 (14%)
Query: 138 EEYSLDLIPFDGDLLSMESEGAFKECYL----EGDQTSLYHAAKGLMTLQALYGTIPQI- 192
+E L +P++ + S+++ + Y E L A+ + TL A P I
Sbjct: 131 KEIHLAFLPYEAQVFSLDAPHSTYNLYCPFRAEERTRQLEVLAQQIATLCATLQEYPAIR 190
Query: 193 FGKG-ECARQVANMMIRMKREFTGSQNSIFP----VFDNLLLLDRNVDLLTPLATQLTYE 247
+ KG E Q+A+ ++ F S+ LL++DR D ++PL +LT++
Sbjct: 191 YRKGPEDTAQLAHAVLAKLNAFKADTPSLGEGPEKTRSQLLIMDRAADPVSPLLHELTFQ 250
Query: 248 GLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKNFNAV 307
+ ++ I+ + + ++ K + L+ ++L+ E+R + V
Sbjct: 251 AMAYDLLDIEQDTYRYETTGLSEARE-----------KAVLLDEDDDLWVELRHMHIADV 299
Query: 308 GSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAARGSLANHTSIA-ELIKDVTT 366
+++ + + + + ++ Q + ++P Q + H +A + +K
Sbjct: 300 SKKVTELLRTFCESKRLTTDKANIKDLSQILKKMPQYQKELNKYSTHLHLADDCMKHFKG 359
Query: 367 SEDFFDKL-TVEQEFMSGIDT--DKVNNYIE-------DCIAQKHSLIKVLRLVCLQSVC 416
S +KL +VEQ+ G D +K+ + ++ D + I+VL L L
Sbjct: 360 S---VEKLCSVEQDLAMGSDAEGEKIKDSMKLIVPVLLDAAVPAYDKIRVLLLYIL---- 412
Query: 417 NSGLKQKVLDYYKREILQTYGYE-HILTLHNLEKAGLLKPQTGGRNNYPTIRKTLRLWMD 475
L+ V + +++Q + H + NLE+ G GG + R+
Sbjct: 413 ---LRNGVSEENLAKLIQHANVQAHSSLIRNLEQLGGTVTNPGGSGTSSRLEPRERM--- 466
Query: 476 DVNEQNPTDISYVYSGYAP-----LSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQPLP 530
PT Y S + P + + L R W + + P P + +
Sbjct: 467 -----EPT---YQLSRWTPVIKDVMEDAVEDRLDRNLWPFVSD-----PAPTASSQAAVS 513
Query: 531 T--GLQKKRQPG-ENRV---TLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNG 584
G K + G E R +++ +GGV +E+ A +++ +G E +I ++ ++
Sbjct: 514 ARFGHWHKNKAGIEARAGPRLIVYVMGGVAMSEMRAAYEVTRATEGKWEVLIGSSHILTP 573
Query: 585 TSWIEAL 591
T +++ L
Sbjct: 574 TRFLDDL 580
>gi|33469966 vesicle transport-related protein isoform a [Homo
sapiens]
Length = 642
Score = 43.5 bits (101), Expect = 6e-04
Identities = 75/403 (18%), Positives = 154/403 (38%), Gaps = 58/403 (14%)
Query: 34 KAIVWDEYLTGPFGLIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDII 93
K +++D + + L++ + L +R P DV ++FV P E +D +
Sbjct: 44 KVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIPDVP-AVYFVMPTEENIDRM 102
Query: 94 AENVLSEDRRGPTRDFHILFVPRRSLLCEQRLKDLG---VLGSFIHR-----EEYSLDLI 145
+++ R +++ F+ S + +L+D+ + S + + ++Y L+ I
Sbjct: 103 CQDL----RNQLYESYYLNFI---SAISRSKLEDIANAALAASAVTQVAKVFDQY-LNFI 154
Query: 146 PFDGDLLSMESEGAFKECYLEGD---------QTSLYHAAKGLMTLQALYGTIPQI-FGK 195
+ D+ + ++ Y + +T + L G +P I +
Sbjct: 155 TLEDDMFVLCNQNKELVSYRAINRPDITDTEMETVMDTIVDSLFCFFVTLGAVPIIRCSR 214
Query: 196 GECARQVANMMIRMKRE-FTGSQNSIFP---------VFDN--LLLLDRNVDLLTPLATQ 243
G A VA + + RE ++NS+F F L+L+DRN+DL TPL
Sbjct: 215 GTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRNIDLATPLHHT 274
Query: 244 LTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAEELYAEIRDKN 303
TY+ L+ ++ + V L E + G + K L ++ + + +
Sbjct: 275 WTYQALVHDVLDFHLNRVNL-EESSGVENSPAGARPKRKNKKSYDLTPVDKFWQKHKGSP 333
Query: 304 FNAVGSVLSKKAKIISAAFEERHNAKTV------------------GEIKQFVSQLPHMQ 345
F V + ++ + A +E K++ ++ VS LP +
Sbjct: 334 FPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLTSAVSSLPELL 393
Query: 346 AARGSLANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDK 388
+ + HT++A + + + E++ MS DK
Sbjct: 394 EKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDK 436
>gi|33469978 vesicle transport-related protein isoform b [Homo
sapiens]
Length = 575
Score = 42.7 bits (99), Expect = 0.001
Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 32/233 (13%)
Query: 187 GTIPQI-FGKGECARQVANMMIRMKRE-FTGSQNSIFP---------VFDN--LLLLDRN 233
G +P I +G A VA + + RE ++NS+F F L+L+DRN
Sbjct: 138 GAVPIIRCSRGTAAEMVAVKLDKKLRENLRDARNSLFTGDTLGAGQFSFQRPLLVLVDRN 197
Query: 234 VDLLTPLATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPTEAKKLQLNSAE 293
+DL TPL TY+ L+ ++ + V L E + G + K L +
Sbjct: 198 IDLATPLHHTWTYQALVHDVLDFHLNRVNL-EESSGVENSPAGARPKRKNKKSYDLTPVD 256
Query: 294 ELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTV------------------GEIK 335
+ + + + F V + ++ + A +E K++ ++
Sbjct: 257 KFWQKHKGSPFPEVAESVQQELESYRAQEDEVKRLKSIMGLEGEDEGAISMLSDNTAKLT 316
Query: 336 QFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKLTVEQEFMSGIDTDK 388
VS LP + + + HT++A + + + E++ MS DK
Sbjct: 317 SAVSSLPELLEKKRLIDLHTNVATAVLEHIKARKLDVYFEYEEKIMSKTTLDK 369
>gi|119226220 membrane-spanning 4-domains, subfamily A, member 14
isoform 2 [Homo sapiens]
Length = 662
Score = 35.0 bits (79), Expect = 0.20
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 486 SYVYSGYAPLSVRLAQ--LLSRPGWRSIEEV-----LRILPGPHF--EERQPLPTGLQKK 536
S ++ GYA + L++ L+S+PG + E V ILP P F EE +PLP L+KK
Sbjct: 182 SVIFGGYAFFKLTLSRSPLVSQPGNKGREFVPDEQKQSILPSPKFSEEEIEPLPPTLEKK 241
Query: 537 RQPGEN 542
P EN
Sbjct: 242 --PSEN 245
>gi|119226217 membrane-spanning 4-domains, subfamily A, member 14
isoform 1 [Homo sapiens]
Length = 679
Score = 35.0 bits (79), Expect = 0.20
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 486 SYVYSGYAPLSVRLAQ--LLSRPGWRSIEEV-----LRILPGPHF--EERQPLPTGLQKK 536
S ++ GYA + L++ L+S+PG + E V ILP P F EE +PLP L+KK
Sbjct: 199 SVIFGGYAFFKLTLSRSPLVSQPGNKGREFVPDEQKQSILPSPKFSEEEIEPLPPTLEKK 258
Query: 537 RQPGEN 542
P EN
Sbjct: 259 --PSEN 262
>gi|208431778 phosphatidylinositol-4-phosphate 5-kinase, type I,
alpha isoform 1 [Homo sapiens]
Length = 562
Score = 33.9 bits (76), Expect = 0.44
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 85 PRLELMDIIAENVLSEDRRGPTR--DFHILFVPRRSLLCEQRLKDLGVLG-----SFIHR 137
P+ L E++ E RRG T D H+ +P R+ E+ L +G++ F+ +
Sbjct: 355 PQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKK 414
Query: 138 EEYSLDLIPFDGDLLSMESEGAFKE 162
E+S + DGD +S+ G + E
Sbjct: 415 LEHSWKALVHDGDTVSVHRPGFYAE 439
>gi|208431776 phosphatidylinositol-4-phosphate 5-kinase, type I,
alpha isoform 4 [Homo sapiens]
Length = 500
Score = 33.9 bits (76), Expect = 0.44
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 85 PRLELMDIIAENVLSEDRRGPTR--DFHILFVPRRSLLCEQRLKDLGVLG-----SFIHR 137
P+ L E++ E RRG T D H+ +P R+ E+ L +G++ F+ +
Sbjct: 342 PQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKK 401
Query: 138 EEYSLDLIPFDGDLLSMESEGAFKE 162
E+S + DGD +S+ G + E
Sbjct: 402 LEHSWKALVHDGDTVSVHRPGFYAE 426
>gi|4505815 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha
isoform 2 [Homo sapiens]
Length = 549
Score = 33.9 bits (76), Expect = 0.44
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 85 PRLELMDIIAENVLSEDRRGPTR--DFHILFVPRRSLLCEQRLKDLGVLG-----SFIHR 137
P+ L E++ E RRG T D H+ +P R+ E+ L +G++ F+ +
Sbjct: 342 PQKALYSTAMESIQGEARRGGTMETDDHMGGIPARNSKGERLLLYIGIIDILQSYRFVKK 401
Query: 138 EEYSLDLIPFDGDLLSMESEGAFKE 162
E+S + DGD +S+ G + E
Sbjct: 402 LEHSWKALVHDGDTVSVHRPGFYAE 426
>gi|20149560 syntaxin 4 [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.74
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 237 LTPLATQLTYEGLIDEIYGIQNSY------VKLPPEKFAPKKQ--GDGGKDLPTEAKKLQ 288
+T LAT L E + E+ +++ ++L + P+K+ + + T +K Q
Sbjct: 67 VTILATPLPEESMKQELQNLRDEIKQLGREIRLQLKAIEPQKEEADENYNSVNTRMRKTQ 126
Query: 289 -----------LNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAF---EERHNAKTVGEI 334
+N + +E R+KN + ++ KI +A EE G+
Sbjct: 127 HGVLSQQFVELINKCNSMQSEYREKNVERI----RRQLKITNAGMVSDEELEQMLDSGQS 182
Query: 335 KQFVSQ-LPHMQAARGSL----ANHTSIAELIKDVTTSEDFFDKLTVEQE 379
+ FVS L Q R +L A H+ I +L + + D F L E E
Sbjct: 183 EVFVSNILKDTQVTRQALNEISARHSEIQQLERSIRELHDIFTFLATEVE 232
>gi|4504705 inositol polyphosphate-4-phosphatase, type 1 isoform b
[Homo sapiens]
Length = 954
Score = 32.0 bits (71), Expect = 1.7
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 11/130 (8%)
Query: 114 VPR-RSLLCEQRLKDLGVLGSFIH-REEYSLDLIPFDGDLLSMESEGAFKECYLEGDQTS 171
+PR RS C L L LG +H R+ ++D++ ++ + F C D+T+
Sbjct: 807 LPRSRSQTCLPEL--LRFLGQNVHARKNKNVDILWQAAEICRRLNGVRFTSCKSAKDRTA 864
Query: 172 LYHAAKGLMTLQALYGTIPQIFGKG-ECARQVANMMIRMKREFTGSQNSIFPVFDNLLLL 230
+ + + LQ +G PQ+F + EC R + + ++ +G + P+ D L L
Sbjct: 865 MSVTLEQCLILQHEHGMAPQVFTQALECMRSIGTREVVTQKNLSG----LVPIRD--LRL 918
Query: 231 DRNVDLLTPL 240
D ++ PL
Sbjct: 919 DPSLLCSIPL 928
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 31.2 bits (69), Expect = 2.8
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 240 LATQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGDGGKDLPT------EAKKLQLNSAE 293
+ TQL E L DE+ +++ ++L A K Q + +DL T E K+L +
Sbjct: 1544 MRTQL--EELEDELQATEDAKLRLEVNMQAMKAQFE--RDLQTRDEQNEEKKRLLIKQVR 1599
Query: 294 ELYAEIRDKNFNAVGSVLSKK-----AKIISAAFEERHNAKTVGEIKQFVSQLPHMQA 346
EL AE+ D+ +V SKK K + A E + A+ + + QL +QA
Sbjct: 1600 ELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKAR-----DEVIKQLRKLQA 1652
>gi|134304853 PTPL1-associated RhoGAP 1 [Homo sapiens]
Length = 1261
Score = 30.0 bits (66), Expect = 6.3
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 289 LNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEERHNAKTVGEIKQFVSQLPHMQAAR 348
L +++L ++ NFN++ ++ +++ A E + N+K +G I P A
Sbjct: 800 LLKSKDLLRQLPASNFNSLHFLIVHLKRVVDHAEENKMNSKNLGVIFGPSLIRPRPTTAP 859
Query: 349 ---GSLANHTSIAELIKD-VTTSEDFFDKLTVEQEFMSGI 384
SLA +++ A L++ +T S+ FD Q+ M I
Sbjct: 860 ITISSLAEYSNQARLVEFLITYSQKIFDGSLQPQDVMCSI 899
>gi|31542785 sec1 family domain containing 2 [Homo sapiens]
Length = 684
Score = 30.0 bits (66), Expect = 6.3
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 539 PGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLM 582
P + + ++F +GGVT +E+ ++ L GT+ ++ +T+L+
Sbjct: 620 PSDYPLLILFVVGGVTVSEVKMVKDLVASLKPGTQVIVLSTRLL 663
>gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo
sapiens]
Length = 421
Score = 29.6 bits (65), Expect = 8.2
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 409 LVCLQSVCNSGLKQKVLDYYKREILQ-TYGYEHILTLHNLEKAGLLKPQTGGRNNYPTIR 467
L C C+ G +Y ++++L+ +Y LT+ L + P+T G
Sbjct: 250 LHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISAL----FVTPKTTGAR-VELSE 304
Query: 468 KTLRLWMDDVNEQNPTD 484
+ L+LW DV++ +PTD
Sbjct: 305 QQLQLWPSDVDKLSPTD 321
>gi|4505343 nuclear cap binding protein subunit 1, 80kDa [Homo
sapiens]
Length = 790
Score = 29.6 bits (65), Expect = 8.2
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 511 IEEVLRILPGPHFEERQPLPTGLQKKRQPGENRVTLIFFLGGVTFAEIAALRFLSQLEDG 570
IEE L + H++ER+ L PG+N++ L + + V FAE+ L ++
Sbjct: 314 IEENLHCIIKSHWKERKTCAAQLVS--YPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVM 371
Query: 571 GTEYVIATTKLMNGT 585
T +I KL G+
Sbjct: 372 YTTLLIELCKLQPGS 386
>gi|50345870 DENN/MADD domain containing 3 [Homo sapiens]
Length = 1198
Score = 29.6 bits (65), Expect = 8.2
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 316 KIISAAFEERHNAKTVGE-IKQFVSQLPHMQAARGSLANHTSIAELIKDVTTSEDFFDKL 374
++IS ++ H A + + +K+F HMQ G + ++KD + F+ L
Sbjct: 619 RLISEILDKPHEASKLDDHVKKFKLPKKHMQL--GDFMKRVQESGIVKDASIIHRLFEAL 676
Query: 375 TVEQEFMSGIDT--DKVNNYIE-DCIAQKHSL--IKVLRLVCLQSVC--NSGLKQ----- 422
TV QE +T D N + E + AQ+ SL + + L + VC +S +K
Sbjct: 677 TVGQEKQIDPETFKDFYNCWKETEAEAQEVSLPWLVMEHLDKNECVCKLSSSVKTNLGVG 736
Query: 423 KVLDYYKREILQTY---GYEHILTLHNLEK 449
K+ KR L T GY I T N+E+
Sbjct: 737 KIAMTQKRLFLLTEGRPGYLEISTFRNIEE 766
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,896,217
Number of Sequences: 37866
Number of extensions: 985597
Number of successful extensions: 1988
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1970
Number of HSP's gapped (non-prelim): 27
length of query: 596
length of database: 18,247,518
effective HSP length: 108
effective length of query: 488
effective length of database: 14,157,990
effective search space: 6909099120
effective search space used: 6909099120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.