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Search of human proteins with 17978481
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo
sapiens]
(695 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens] 1396 0.0
gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens] 782 0.0
gi|20127607 hypothetical protein LOC63894 [Homo sapiens] 48 3e-05
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 34 0.40
gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens] 32 2.0
gi|29837648 cytochrome P450, family 4, subfamily X, polypeptide ... 32 2.6
gi|94400923 trypsin domain containing 1 isoform b [Homo sapiens] 31 4.4
gi|67944634 exocyst complex component 1 isoform 1 [Homo sapiens] 30 5.8
gi|30410720 exocyst complex component 1 isoform 1 [Homo sapiens] 30 5.8
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 30 9.8
gi|91208420 bassoon protein [Homo sapiens] 30 9.8
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 30 9.8
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 30 9.8
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 30 9.8
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 30 9.8
gi|29568099 p47 protein isoform b [Homo sapiens] 30 9.8
gi|20149635 p47 protein isoform a [Homo sapiens] 30 9.8
gi|33286434 p47 protein isoform c [Homo sapiens] 30 9.8
gi|30410716 exocyst complex component 1 isoform 2 [Homo sapiens] 30 9.8
>gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens]
Length = 695
Score = 1396 bits (3614), Expect = 0.0
Identities = 695/695 (100%), Positives = 695/695 (100%)
Query: 1 MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA 60
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
Sbjct: 1 MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA 60
Query: 61 SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS 120
SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
Sbjct: 61 SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS 120
Query: 121 MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW 180
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
Sbjct: 121 MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW 180
Query: 181 TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT 240
TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
Sbjct: 181 TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT 240
Query: 241 GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ 300
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
Sbjct: 241 GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ 300
Query: 301 YKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVA 360
YKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVA
Sbjct: 301 YKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVA 360
Query: 361 RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSK 420
RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSK
Sbjct: 361 RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSK 420
Query: 421 AIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDD 480
AIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDD
Sbjct: 421 AIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDD 480
Query: 481 NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE 540
NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE
Sbjct: 481 NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE 540
Query: 541 DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELE 600
DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELE
Sbjct: 541 DELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELE 600
Query: 601 KFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEH 660
KFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEH
Sbjct: 601 KFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEH 660
Query: 661 RNEAELSLVLSHCTGATDGATADKIQRARAQAQKK 695
RNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
Sbjct: 661 RNEAELSLVLSHCTGATDGATADKIQRARAQAQKK 695
>gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens]
Length = 839
Score = 782 bits (2019), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 300 QYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDV 359
QYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDV
Sbjct: 444 QYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDV 503
Query: 360 ARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALS 419
ARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALS
Sbjct: 504 ARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALS 563
Query: 420 KAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQD 479
KAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQD
Sbjct: 564 KAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQD 623
Query: 480 DNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRL 539
DNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRL
Sbjct: 624 DNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRL 683
Query: 540 EDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEEL 599
EDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEEL
Sbjct: 684 EDELGGQFLDLSLHDTVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEEL 743
Query: 600 EKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIE 659
EKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIE
Sbjct: 744 EKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIE 803
Query: 660 HRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK 695
HRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK
Sbjct: 804 HRNEAELSLVLSHCTGATDGATADKIQRARAQAQKK 839
Score = 622 bits (1603), Expect = e-178
Identities = 300/301 (99%), Positives = 301/301 (100%)
Query: 1 MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA 60
MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA
Sbjct: 1 MDCYTANWNPLGDSAFYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEKAA 60
Query: 61 SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS 120
SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS
Sbjct: 61 SVRPVLDIYSASGMPLASLLWKSGPVVSLGWSAEEELLCVQEDGAVLVYGLHGDFRRHFS 120
Query: 121 MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW 180
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
Sbjct: 121 MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW 180
Query: 181 TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT 240
TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT
Sbjct: 181 TVLCQDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDT 240
Query: 241 GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ 300
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
Sbjct: 241 GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ 300
Query: 301 Y 301
+
Sbjct: 301 F 301
>gi|20127607 hypothetical protein LOC63894 [Homo sapiens]
Length = 493
Score = 48.1 bits (113), Expect = 3e-05
Identities = 74/311 (23%), Positives = 121/311 (38%), Gaps = 63/311 (20%)
Query: 361 RAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVP--LLLKMKRSKLA- 417
++++ L DTP SY+ R G EY S + P + ++++ K+
Sbjct: 123 QSLSDALSDTPAKSYAPELGRPKG-----------EYRDYSNDWSPSDTVRRLRKGKVCS 171
Query: 418 -------------LSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFC 464
L +A+ D +++ VL+ LK L++ F L + +AL F
Sbjct: 172 LERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFL 231
Query: 465 KH-QELETLKDLYNQDDNHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAA 523
K + + L DL+ D +EL H R ++ + R L+T + A++ +
Sbjct: 232 KEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDP-DKRKEFLKTCVGLPFSAED---S 287
Query: 524 KATEDQMRLLRLQRRLED-----ELGGQFLDLSLHDT---------VTTLILGG--HNKR 567
+D LL Q +E E GQ H VTTL H
Sbjct: 288 AHIQDHYTLLERQIIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTE 347
Query: 568 AE-------QLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKS--------KKSPIGY 612
AE L + F+IPDK+ L A A L W +++ + K++PIG+
Sbjct: 348 AEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGF 407
Query: 613 LPFVEICMKQH 623
VEI K +
Sbjct: 408 HRVVEILHKNN 418
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 34.3 bits (77), Expect = 0.40
Identities = 53/281 (18%), Positives = 114/281 (40%), Gaps = 34/281 (12%)
Query: 291 VVGDAPESIQYKQLTIQVL------LDRLVLRRLYPLAIQICEYL-RLPEVQGVSRILAH 343
V D +++Q K+LT Q+L LD ++R+ +++ E + ++Q + ++
Sbjct: 1834 VFDDVQKTLQEKELTCQILEQKIKELDSCLVRQKEVHRVEMEELTSKYEKLQALQQMDGR 1893
Query: 344 WACYKVQQKDVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGE 403
++ +++ ++ + + KL ++D+ + G R + KL + R +
Sbjct: 1894 NKPTELLEENTEEKSKSHLVQPKLLSNMEAQHNDLEFKLAGAEREKQ--KLGKEIVRLQK 1951
Query: 404 QVPLLLKMKRSKLALSKA---------IESGDTDLVFTVLLHLKNELNRGDFFMTLRNQP 454
+ +L K + +L + K I+ DL LK + + + + Q
Sbjct: 1952 DLRMLRKEHQQELEILKKEYDQEREEKIKQEQEDLELKHNSTLKQLMREFNTQLAQKEQE 2011
Query: 455 MALSLYRQFCKHQELET-------------LKDLYNQDDNHQELGSFHIRASYAAEERIE 501
+ +++ K QE+E LK + +DD+ + + A EE +
Sbjct: 2012 LEMTIKETINKAQEVEAELLESHQEETNQLLKKIAEKDDDLKRTAKRYEEILDAREEEMT 2071
Query: 502 GRVAALQTAADAF---YKAKNEFAAKATEDQMRLLRLQRRL 539
+V LQT + Y+ K E D + ++ LQ +L
Sbjct: 2072 AKVRDLQTQLEELQKKYQQKLEQEENPGNDNVTIMELQTQL 2112
>gi|94400921 trypsin domain containing 1 isoform a [Homo sapiens]
Length = 566
Score = 32.0 bits (71), Expect = 2.0
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 33/168 (19%)
Query: 142 SGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW--------TVLCQDRVAHILL 193
+G +LT A + G R + L AP CW T+LC A +
Sbjct: 247 AGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCA--AAPLFR 304
Query: 194 AVGPDLYLLDH--AACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLK 251
A L+ L H AA +A+ PP + GV L + D+G +W A L
Sbjct: 305 AARDALHRLPHSTAALAALLPPEV--GVPWGLPLR------------DSGPLWAAAAVLV 350
Query: 252 EKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESI 299
E + + P+ +V C +E A R++V P+S+
Sbjct: 351 ECGTVWGSGVAVAPRLVVTCRHVSPREAA-------RVLVRSTTPKSV 391
>gi|29837648 cytochrome P450, family 4, subfamily X, polypeptide 1
[Homo sapiens]
Length = 509
Score = 31.6 bits (70), Expect = 2.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 540 EDELGGQFLDLSLHDTVTTLILGGHNKRAEQLA 572
+DE G F D+ +H V+T +L GH+ A ++
Sbjct: 294 KDESGSSFSDIDVHSEVSTFLLAGHDTLAASIS 326
>gi|94400923 trypsin domain containing 1 isoform b [Homo sapiens]
Length = 398
Score = 30.8 bits (68), Expect = 4.4
Identities = 39/152 (25%), Positives = 58/152 (38%), Gaps = 26/152 (17%)
Query: 142 SGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW--------TVLCQDRVAHILL 193
+G +LT A + G R + L AP CW T+LC A +
Sbjct: 247 AGPLLLTDARCLPGTEGGGVFTARPAGALVALVVAPLCWKAGEWVGFTLLCA--AAPLFR 304
Query: 194 AVGPDLYLLDH--AACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMGTASLK 251
A L+ L H AA +A+ PP + GV L + D+G +W A L
Sbjct: 305 AARDALHRLPHSTAALAALLPPEV--GVPWGLPLR------------DSGPLWAAAAVLV 350
Query: 252 EKLCEFNCNIRAPPKQMVWCSRPRSKERAVVV 283
E + + P+ +V C +E A V+
Sbjct: 351 ECGTVWGSGVAVAPRLVVTCRHVSPREAARVL 382
>gi|67944634 exocyst complex component 1 isoform 1 [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 5.8
Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 17/178 (9%)
Query: 481 NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE 540
NH +L HI+A + + A AADA + N A + D + ++ Q++
Sbjct: 278 NHMDLAKGHIKALQEGDLASSRGIEACTNAADALLQCMN-VALRPGHDLLLAVKQQQQRF 336
Query: 541 DELGGQFLDLSLHDTVTTLILGGHNKRA--EQLARDFRIPDKRLWWLKLTALADLEDWEE 598
+L F + GH++ + Q + + +P+ + L A L +W +
Sbjct: 337 SDLRELFARRLASHLNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLK 396
Query: 599 LEKFSKSKKSPIGYLPFVEICMKQHNK--------------YEAKKYASRVGPEQKVK 642
+ K + Y+ ++ ++ K E+KK+A+ E VK
Sbjct: 397 STDYGKYEGLTKNYMDYLSRLYEREIKDFFEVAKIKMTGTTKESKKFATLPRKESAVK 454
>gi|30410720 exocyst complex component 1 isoform 1 [Homo sapiens]
Length = 894
Score = 30.4 bits (67), Expect = 5.8
Identities = 35/178 (19%), Positives = 68/178 (38%), Gaps = 17/178 (9%)
Query: 481 NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE 540
NH +L HI+A + + A AADA + N A + D + ++ Q++
Sbjct: 278 NHMDLAKGHIKALQEGDLASSRGIEACTNAADALLQCMN-VALRPGHDLLLAVKQQQQRF 336
Query: 541 DELGGQFLDLSLHDTVTTLILGGHNKRA--EQLARDFRIPDKRLWWLKLTALADLEDWEE 598
+L F + GH++ + Q + + +P+ + L A L +W +
Sbjct: 337 SDLRELFARRLASHLNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLK 396
Query: 599 LEKFSKSKKSPIGYLPFVEICMKQHNK--------------YEAKKYASRVGPEQKVK 642
+ K + Y+ ++ ++ K E+KK+A+ E VK
Sbjct: 397 STDYGKYEGLTKNYMDYLSRLYEREIKDFFEVAKIKMTGTTKESKKFATLPRKESAVK 454
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 29.6 bits (65), Expect = 9.8
Identities = 70/280 (25%), Positives = 104/280 (37%), Gaps = 49/280 (17%)
Query: 389 ELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFM 448
E A KL R E +LLK + KLALS+ IE L+ EL++
Sbjct: 247 EEASKLTALRLRLDESQKVLLKEREDKLALSRNIEK------------LEGELSQWKI-- 292
Query: 449 TLRNQPMALSLYRQFCKHQELETLKDLYNQDDNHQ-ELGSFHIRASYAAEERIEGRVAAL 507
Y + K ++ E LK L + HQ ELG E +E + A
Sbjct: 293 ----------KYEELSKTKQ-EMLKQLSILKEAHQDELGRM--------SEDLEDELGAR 333
Query: 508 QTAADAFYKAKNEFAAKATEDQMRLLRLQRRLEDELGGQFLDLSLHDTVTTL---ILGGH 564
+ + + E E+ R +R ++LG + + L V L +
Sbjct: 334 SSMDRKMAELRGEMERLQAENAAEWGRRERLETEKLGLERENKKLRAQVGDLEEALARRR 393
Query: 565 NKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHN 624
+ A L D R L + K LADL+ K K + + L ++QH
Sbjct: 394 RQTASALDCDLRASQAAL-FEKNKELADLKHVH--GKLKKQFQEKVAELAHANRRVEQH- 449
Query: 625 KYEAKKYASRVGPEQKVKALLLVGDVAQAADVAIEHRNEA 664
+ E KK RV +K ++AQA D E N+A
Sbjct: 450 EAEVKKLRLRVEELKK--------ELAQAEDELDEAHNQA 481
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 29.6 bits (65), Expect = 9.8
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 398 EPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMAL 457
E R +Q LL+++R ++ L K + L L+ EL R + + L
Sbjct: 2362 EERQRKQQEQLLQLERERVELEKLRQ-----------LRLQEELERERVELQRHREEEQL 2410
Query: 458 SLYRQFCKHQELETLKDLYNQDDNHQELGSFHIRASYAAEERIE 501
+ R+ QEL+T+K Q + F ++ A++R++
Sbjct: 2411 LVQREL---QELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQ 2451
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 29.6 bits (65), Expect = 9.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 495 AAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLED 541
AA++++EG + L+ AD+ K + E + + Q ++ QR LED
Sbjct: 1617 AAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELED 1663
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 29.6 bits (65), Expect = 9.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 495 AAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLED 541
AA++++EG + L+ AD+ K + E + + Q ++ QR LED
Sbjct: 1624 AAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELED 1670
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 29.6 bits (65), Expect = 9.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 495 AAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLED 541
AA++++EG + L+ AD+ K + E + + Q ++ QR LED
Sbjct: 1624 AAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELED 1670
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 29.6 bits (65), Expect = 9.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 495 AAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLED 541
AA++++EG + L+ AD+ K + E + + Q ++ QR LED
Sbjct: 1617 AAKKKLEGDLKDLELQADSAIKGREEAIKQLRKLQAQMKDFQRELED 1663
>gi|29568099 p47 protein isoform b [Homo sapiens]
Length = 339
Score = 29.6 bits (65), Expect = 9.8
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 320 PLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVAR---------AINQKLGDT 370
P Q E +R EV R LAH + +D DED + QKLG T
Sbjct: 173 PSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGST 232
Query: 371 PG--VSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 407
+S S A +A + +I + E EP + Q+ L
Sbjct: 233 APQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRL 271
>gi|20149635 p47 protein isoform a [Homo sapiens]
Length = 370
Score = 29.6 bits (65), Expect = 9.8
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 320 PLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVAR---------AINQKLGDT 370
P Q E +R EV R LAH + +D DED + QKLG T
Sbjct: 204 PSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGST 263
Query: 371 PG--VSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 407
+S S A +A + +I + E EP + Q+ L
Sbjct: 264 APQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRL 302
>gi|33286434 p47 protein isoform c [Homo sapiens]
Length = 259
Score = 29.6 bits (65), Expect = 9.8
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 320 PLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVAR---------AINQKLGDT 370
P Q E +R EV R LAH + +D DED + QKLG T
Sbjct: 93 PSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGST 152
Query: 371 PG--VSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 407
+S S A +A + +I + E EP + Q+ L
Sbjct: 153 APQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRL 191
>gi|30410716 exocyst complex component 1 isoform 2 [Homo sapiens]
Length = 879
Score = 29.6 bits (65), Expect = 9.8
Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Query: 481 NHQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLE 540
NH +L HI+A + + A AADA + N A + D + ++ Q++
Sbjct: 278 NHMDLAKGHIKALQEGDLASSRGIEACTNAADALLQCMN-VALRPGHDLLLAVKQQQQRF 336
Query: 541 DELGGQFLDLSLHDTVTTLILGGHNKRA--EQLARDFRIPDKRLWWLKLTALADLEDWEE 598
+L F + GH++ + Q + + +P+ + L A L +W +
Sbjct: 337 SDLRELFARRLASHLNNVFVQQGHDQSSTLAQHSVELTLPNHHPFHRDLLRYAKLMEWLK 396
Query: 599 LEKFSKSKKSPIGYLPFV 616
+ K + Y+ ++
Sbjct: 397 STDYGKYEGLTKNYMDYL 414
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,060,145
Number of Sequences: 37866
Number of extensions: 1143336
Number of successful extensions: 2470
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2452
Number of HSP's gapped (non-prelim): 32
length of query: 695
length of database: 18,247,518
effective HSP length: 109
effective length of query: 586
effective length of database: 14,120,124
effective search space: 8274392664
effective search space used: 8274392664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.