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Search of human proteins with 178557813
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|178557813 hypothetical protein LOC644186 [Homo sapiens]
(88 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|178557813 hypothetical protein LOC644186 [Homo sapiens] 181 1e-46
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 34 0.028
gi|21389505 janus kinase and microtubule interacting protein 1 i... 32 0.082
gi|150456473 janus kinase and microtubule interacting protein 1 ... 32 0.082
gi|38570058 hypothetical protein LOC80129 [Homo sapiens] 32 0.14
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 32 0.14
gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens] 31 0.24
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 31 0.24
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 30 0.41
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 30 0.53
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 30 0.53
gi|111074532 OGT(O-Glc-NAc transferase)-interacting protein 106 ... 30 0.53
gi|45359873 OGT(O-Glc-NAc transferase)-interacting protein 106 K... 30 0.53
gi|169217383 PREDICTED: similar to coiled-coil domain containing... 29 0.70
gi|169207319 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|169207756 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|239750312 PREDICTED: similar to hCG1744891 [Homo sapiens] 29 0.70
gi|169207046 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 29 0.91
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 28 1.2
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 28 1.2
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 28 1.2
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 28 1.2
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 28 1.2
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 28 1.2
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 28 1.2
gi|116008447 CAP-GLY domain containing linker protein 2 isoform ... 28 1.2
gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2... 28 1.2
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 28 1.2
gi|223890259 midline 2 isoform 2 [Homo sapiens] 28 1.5
>gi|178557813 hypothetical protein LOC644186 [Homo sapiens]
Length = 88
Score = 181 bits (458), Expect = 1e-46
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMR 60
MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMR
Sbjct: 1 MDDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMR 60
Query: 61 RLEDAFVNCKEEMEKNWQELLHETKQRL 88
RLEDAFVNCKEEMEKNWQELLHETKQRL
Sbjct: 61 RLEDAFVNCKEEMEKNWQELLHETKQRL 88
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 33.9 bits (76), Expect = 0.028
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 5 DPEERNY--DNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRL 62
D EER + D L+ + ++ EK+ E+ EK+ + + + T+ E ++
Sbjct: 356 DQEERMWEQDERLREKEERMREQEKMWEQEEKMQEEERIREREKKMREEEETMREQEEKM 415
Query: 63 EDAFVNCKEEMEKNW-QELLHETKQRL 88
+ N E+ EK W Q+ L E K++L
Sbjct: 416 QKQEENMWEQEEKEWQQQRLPEQKEKL 442
>gi|21389505 janus kinase and microtubule interacting protein 1
isoform 2 [Homo sapiens]
Length = 626
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 23 KDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCKEEME--KNWQEL 80
+DLEKLL E + S W+ +++RTN L E + RLE K EM+ K+ EL
Sbjct: 537 EDLEKLLVEKGQDS---KWVEEKQLLIRTNQDLLEKIYRLEMEENQLKNEMQDAKDQNEL 593
Query: 81 L 81
L
Sbjct: 594 L 594
>gi|150456473 janus kinase and microtubule interacting protein 1
isoform 1 [Homo sapiens]
Length = 831
Score = 32.3 bits (72), Expect = 0.082
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 23 KDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFVNCKEEME--KNWQEL 80
+DLEKLL E + S W+ +++RTN L E + RLE K EM+ K+ EL
Sbjct: 537 EDLEKLLVEKGQDS---KWVEEKQLLIRTNQDLLEKIYRLEMEENQLKNEMQDAKDQNEL 593
Query: 81 L 81
L
Sbjct: 594 L 594
>gi|38570058 hypothetical protein LOC80129 [Homo sapiens]
Length = 715
Score = 31.6 bits (70), Expect = 0.14
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 2 DDADPEERNY----DNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT--- 54
D DP+ERN ++++ L DL K+ E + ++ + ++ T ++M + T
Sbjct: 177 DCLDPDERNDKASDEDLILKLRDLRKENEFVKGQI--VILEETINVHEMEAKASRETIMR 234
Query: 55 LAESMRRLEDAFVNCKEEMEKNWQELLH--ETKQRL 88
LA + R + +C EE EK Q+LL E K+ L
Sbjct: 235 LASEVNREQKKAASCTEEKEKLNQDLLSAVEAKEAL 270
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 3 DADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVM-RTNPTLAESMRR 61
D + ERN D+ L++L + L+ E+EK+ Q T +M V+ R E +
Sbjct: 1553 DIEMAERNEDHHLQVLKESEVLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGHKKEELHL 1612
Query: 62 LEDAFVNCKEEMEK 75
L+ + V K ++++
Sbjct: 1613 LQGSMVQAKADLQE 1626
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 18 LSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTN-PTLAESMRRLEDAFVNCKEEMEKN 76
L L ++ KL +E+++++ + D+ M+ E++ L++ N ++ +
Sbjct: 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAMQQQLQEKREAVNSLQEELANVQDHLNLA 1883
Query: 77 WQELLHETKQR 87
Q+LLH TK +
Sbjct: 1884 KQDLLHTTKHQ 1894
>gi|115298659 spectrin, alpha, erythrocytic 1 [Homo sapiens]
Length = 2419
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 2 DDADPEERNYDNMLKMLSDLN--KDLEKLLEEMEKISVQATWMAYDMV----VMRTNPTL 55
+D+D + +N+ N K L+D KD++ L ++K V +A + + +T +
Sbjct: 589 EDSD-DLKNWINKKKKLADDEDYKDIQNLKSRVQKQQVFEKELAVNKTQLENIQKTGQEM 647
Query: 56 AESMRRLEDAFVNCKEEMEKNWQELLHETKQR 87
E D E+ W+ELL TKQ+
Sbjct: 648 IEGGHYASDNVTTRLSEVASLWEELLEATKQK 679
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 5 DPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLED 64
D + + NM+ ML DLE E++K +A + ++ M T+ A++ +E+
Sbjct: 103 DARQHSNSNMVIMLIGNKSDLESR-REVKKEEGEAFAREHGLIFMETS---AKTASNVEE 158
Query: 65 AFVNCKEEMEKNWQE 79
AF+N +E+ + QE
Sbjct: 159 AFINTAKEIYEKIQE 173
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 21 LNKDLEKLLEEMEKISV---------QATWMAYDMVVMRTNPTLAESMRRLEDAFVNCKE 71
+N DLEKL E+EKI + Q+T Y ++ + TL +S+ E+ +
Sbjct: 921 MNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLESTLKKSLEIKEEKIAALEA 980
Query: 72 EMEKNW---QELLHETK 85
+E++ Q+L E K
Sbjct: 981 RLEESTNYNQQLRQELK 997
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 29.6 bits (65), Expect = 0.53
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 3 DADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRL 62
+ DPE N + ML + S L +EKLLE + + S Q + + + ES R+
Sbjct: 1834 EIDPE--NEELMLNISSRLQAAVEKLLEAISETSSQ-----LEHAKVTQTELMRESFRQK 1886
Query: 63 EDA--FVNCKEEMEKNWQELLHE 83
++A + C+EE+ +E LHE
Sbjct: 1887 QEATESLKCQEEL----RERLHE 1905
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 29.6 bits (65), Expect = 0.53
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 3 DADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRL 62
+ DPE N + ML + S L +EKLLE + + S Q + + + ES R+
Sbjct: 1834 EIDPE--NEELMLNISSRLQAAVEKLLEAISETSSQ-----LEHAKVTQTELMRESFRQK 1886
Query: 63 EDA--FVNCKEEMEKNWQELLHE 83
++A + C+EE+ +E LHE
Sbjct: 1887 QEATESLKCQEEL----RERLHE 1905
>gi|111074532 OGT(O-Glc-NAc transferase)-interacting protein 106 KDa
isoform 1 [Homo sapiens]
Length = 953
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 2 DDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRR 61
+DA ++ ++L + DL K + E E++ VQ A D L +R
Sbjct: 275 EDAARQQEEITHLLSQIVDLQKKAKACAVENEEL-VQHLGAAKD-----AQRQLTAELRE 328
Query: 62 LEDAFVNCKEEMEKNWQEL 80
LED + C E + + +EL
Sbjct: 329 LEDKYAECMEMLHEAQEEL 347
>gi|45359873 OGT(O-Glc-NAc transferase)-interacting protein 106 KDa
isoform 2 [Homo sapiens]
Length = 686
Score = 29.6 bits (65), Expect = 0.53
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 2 DDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRR 61
+DA ++ ++L + DL K + E E++ VQ A D L +R
Sbjct: 217 EDAARQQEEITHLLSQIVDLQKKAKACAVENEEL-VQHLGAAKD-----AQRQLTAELRE 270
Query: 62 LEDAFVNCKEEMEKNWQEL 80
LED + C E + + +EL
Sbjct: 271 LEDKYAECMEMLHEAQEEL 289
>gi|169217383 PREDICTED: similar to coiled-coil domain containing 29
[Homo sapiens]
Length = 185
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 2 DDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRR 61
DD PEE + L+ N+ +++ L M+K+ + L E +
Sbjct: 39 DDLTPEEEAVSSKCVNLAKDNQVIQQELLSMKKVQQECE-------------KLEEDKKM 85
Query: 62 LEDAFVNCKEEMEKNWQEL 80
LE+ +N K ME N EL
Sbjct: 86 LEEEILNLKTHMENNMVEL 104
>gi|169207319 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 12 DNMLKMLSDLNKDLEKLLEEMEKISVQATWM-----AYDMVVMRTNPTLAESMRRLEDAF 66
DN + L D+N +KL E EK+ +TW+ ++V + +P S ++L
Sbjct: 718 DNGEETLQDINNLTDKLRERDEKMQHVSTWLRGSLEGLRLLVEQESPMDLLSKQQLRALL 777
Query: 67 VNCKEE 72
V KEE
Sbjct: 778 VTSKEE 783
>gi|169207756 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 12 DNMLKMLSDLNKDLEKLLEEMEKISVQATWM-----AYDMVVMRTNPTLAESMRRLEDAF 66
DN + L D+N +KL E EK+ +TW+ ++V + +P S ++L
Sbjct: 718 DNGEETLQDINNLTDKLRERDEKMQHVSTWLRGSLEGLRLLVEQESPMDLLSKQQLRALL 777
Query: 67 VNCKEE 72
V KEE
Sbjct: 778 VTSKEE 783
>gi|239750312 PREDICTED: similar to hCG1744891 [Homo sapiens]
Length = 154
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 13/79 (16%)
Query: 2 DDADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRR 61
DD PEE + L+ N+ +++ L M+K+ + L E +
Sbjct: 39 DDLTPEEEAVSSKCVNLAKDNQVIQQELLSMKKVQQECE-------------KLEEDKKM 85
Query: 62 LEDAFVNCKEEMEKNWQEL 80
LE+ +N K ME N EL
Sbjct: 86 LEEEILNLKTHMENNMVEL 104
>gi|169207046 PREDICTED: hypothetical protein [Homo sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 12 DNMLKMLSDLNKDLEKLLEEMEKISVQATWM-----AYDMVVMRTNPTLAESMRRLEDAF 66
DN + L D+N +KL E EK+ +TW+ ++V + +P S ++L
Sbjct: 718 DNGEETLQDINNLTDKLRERDEKMQHVSTWLRGSLEGLRLLVEQESPMDLLSKQQLRALL 777
Query: 67 VNCKEE 72
V KEE
Sbjct: 778 VTSKEE 783
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 22 NKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAES-MRRLEDAFVNCKEEMEKNWQEL 80
++++++L EE+++++ + M DM+ +RT T ES ++ +E+ + +E+ + L
Sbjct: 1060 DEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEE----NKVIEQQNESL 1115
Query: 81 LHE 83
LHE
Sbjct: 1116 LHE 1118
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 1902 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 1955
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 566 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 619
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 569 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 622
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 1787 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 1840
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 1906 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 1959
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 1787 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 1840
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 16 KMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPT---LAESMRRLEDAF 66
+ + +++++L+K EE+ + QA ++ D M PT L++ R +E F
Sbjct: 1910 RKIKEIDRELQKKKEELNAVRRQAEGLSEDGAAMAVEPTQIQLSKRWREIESKF 1963
>gi|116008447 CAP-GLY domain containing linker protein 2 isoform 1
[Homo sapiens]
Length = 1046
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 15 LKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAE----SMRRLEDAFVNCK 70
L+ D +D E + E+EK+ V+ A + ++ +LAE RL+ A K
Sbjct: 718 LQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGK 777
Query: 71 EEMEKNWQELL 81
+E+E ++LL
Sbjct: 778 QEVESLREKLL 788
>gi|14702162 CAP-GLY domain containing linker protein 2 isoform 2
[Homo sapiens]
Length = 1011
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 15 LKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAE----SMRRLEDAFVNCK 70
L+ D +D E + E+EK+ V+ A + ++ +LAE RL+ A K
Sbjct: 683 LQEAQDQRRDAELRVHELEKLDVEYRGQAQAIEFLKEQISLAEKKMLDYERLQRAEAQGK 742
Query: 71 EEMEKNWQELL 81
+E+E ++LL
Sbjct: 743 QEVESLREKLL 753
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 4 ADPEERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLE 63
A+ + + D +L+ LNK++ K +V AT D+V + ++ R LE
Sbjct: 372 AELDRKAMDELLRERDILNKNMLK--------AVNATQKQTDLVKLHE-----QAKRNLE 418
Query: 64 DAFVNCKEEMEKNWQELLHETKQR 87
N K+E +K + + H K+R
Sbjct: 419 GEIQNYKDEAQKQRKIIFHLEKER 442
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 28.1 bits (61), Expect = 1.5
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 17/86 (19%)
Query: 8 ERNYDNMLKMLSDLNKDLEKLLEEMEKISVQATW-----------------MAYDMVVMR 50
E N N++K S+L + KL++ +++ V M+ ++
Sbjct: 244 EMNLTNLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVK 303
Query: 51 TNPTLAESMRRLEDAFVNCKEEMEKN 76
T +R+L NC++ +E++
Sbjct: 304 IKETKVMKLRKLAQQVANCRQCLERS 329
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,177,885
Number of Sequences: 37866
Number of extensions: 103661
Number of successful extensions: 664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 128
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.