Guide to the Human Genome
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Name: C22orf41 Sequence: fasta or formatted (88aa) NCBI GI: 178557813
Description:

hypothetical protein LOC644186

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          5           1
 C cysteine            1.1          1           1
 D aspartate           9.1          8           2
 E glutamate          14.8         13           2
 F phenylalanine       1.1          1           1
 G glycine             0.0          0           0
 H histidine           1.1          1           1
 I isoleucine          1.1          1           1
 K lysine              8.0          7           1
 L leucine            12.5         11           2
 M methionine         10.2          9           1
 N asparagine          6.8          6           1
 P proline             2.3          2           1
 Q glutamine           3.4          3           1
 R arginine            5.7          5           2
 S serine              3.4          3           1
 T threonine           4.5          4           1
 V valine              4.5          4           2
 W tryptophan          2.3          2           1
 Y tyrosine            2.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC644186 
LOC283685             0.058   PREDICTED: golgi autoantigen, golgin subfamily a-li...
JAKMIP1               0.045   janus kinase and microtubule interacting protein 1 i...
JAKMIP1               0.045   janus kinase and microtubule interacting protein 1 ...
C6orf97               0.045   hypothetical protein LOC80129 
CEP110                0.045   centrosomal protein 110kDa 
SPTA1                 0.038   spectrin, alpha, erythrocytic 1 
RAB2A                 0.038   RAB2A, member RAS oncogene family 
CCDC88A               0.032   coiled-coil domain containing 88A isoform 1 
AKAP9                 0.032   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.032   A-kinase anchor protein 9 isoform 3 
TRAK1                 0.032   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK1                 0.032   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
LOC728897             0.026   PREDICTED: similar to coiled-coil domain containing...
C14orf38              0.026   PREDICTED: hypothetical protein 
C14orf38              0.026   PREDICTED: hypothetical protein 
LOC643166             0.026   PREDICTED: similar to hCG1744891 
C14orf38              0.026   PREDICTED: hypothetical protein 
MYT1L                 0.026   myelin transcription factor 1-like 
DMD                   0.019   dystrophin Dp427c isoform 
DMD                   0.019   dystrophin Dp260-2 isoform 
DMD                   0.019   dystrophin Dp260-1 isoform 
DMD                   0.019   dystrophin Dp427p2 isoform 
DMD                   0.019   dystrophin Dp427p1 isoform 
DMD                   0.019   dystrophin Dp427l isoform 
DMD                   0.019   dystrophin Dp427m isoform 
CLIP2                 0.019   CAP-GLY domain containing linker protein 2 isoform ...
CLIP2                 0.019   CAP-GLY domain containing linker protein 2 isoform 2...
CCDC147               0.019   coiled-coil domain containing 147 
MID2                  0.019   midline 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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