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Search of human proteins with 170784824
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170784824 paired box 4 [Homo sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170784824 paired box 4 [Homo sapiens] 712 0.0
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 244 6e-65
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 244 6e-65
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 235 5e-62
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 191 8e-49
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 187 9e-48
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 186 3e-47
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 186 3e-47
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 183 2e-46
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 183 2e-46
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 183 2e-46
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 183 2e-46
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 183 2e-46
gi|34878709 paired box protein 2 isoform c [Homo sapiens] 172 4e-43
gi|34878716 paired box protein 2 isoform d [Homo sapiens] 169 3e-42
gi|34878701 paired box protein 2 isoform b [Homo sapiens] 169 3e-42
gi|34878699 paired box protein 2 isoform a [Homo sapiens] 165 5e-41
gi|34878703 paired box protein 2 isoform e [Homo sapiens] 165 5e-41
gi|7524365 paired box 8 isoform PAX8D [Homo sapiens] 164 1e-40
gi|7669542 paired box 8 isoform PAX8E [Homo sapiens] 164 1e-40
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 164 1e-40
gi|7524361 paired box 8 isoform PAX8B [Homo sapiens] 164 1e-40
gi|5803117 paired box 8 isoform PAX8A [Homo sapiens] 164 1e-40
gi|9951920 paired box 5 [Homo sapiens] 160 1e-39
gi|7242167 paired box 9 [Homo sapiens] 145 7e-35
gi|197276661 paired box 1 [Homo sapiens] 144 1e-34
gi|7524356 paired box 3 isoform PAX3b [Homo sapiens] 134 2e-31
gi|6654638 paired box 3 isoform PAX3a [Homo sapiens] 134 2e-31
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 82 5e-16
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 79 8e-15
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 712 bits (1839), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE
Sbjct: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL
Sbjct: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
Query: 121 RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE 180
RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE
Sbjct: 121 RALQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPGTGHRNRTIFSPSQAEALEKE 180
Query: 181 FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR 240
FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR
Sbjct: 181 FQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQLPGASQGLTVPR 240
Query: 241 VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP 300
VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP
Sbjct: 241 VAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLP 300
Query: 301 PQPNSLDSGLLCLPCPSSHCHLASLSGSQALLWPGCPLLYGLE 343
PQPNSLDSGLLCLPCPSSHCHLASLSGSQALLWPGCPLLYGLE
Sbjct: 301 PQPNSLDSGLLCLPCPSSHCHLASLSGSQALLWPGCPLLYGLE 343
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 244 bits (624), Expect = 6e-65
Identities = 139/269 (51%), Positives = 166/269 (61%), Gaps = 49/269 (18%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP TRQ+IV LA SG RPCDISRIL+VSNGCVSKILGRYY TG +
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P+ IGGSKPR+ATP VV++IAQ K ECP++FAWEI+ +L +EG+CT D PSVSSINRVL
Sbjct: 68 PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127
Query: 121 RAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGS-ETPRGTHPGTG---------------- 162
R L E Q + + +L +GS T G +PGT
Sbjct: 128 RNLASEKQQMGADGMYDKL----RMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGG 183
Query: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKL 195
RNRT F+ Q EALEKEF+R YPD AR +L
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 196 ATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
A LPE ++VWFSNRRAKWRR+EKL+
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLR 272
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 244 bits (624), Expect = 6e-65
Identities = 139/269 (51%), Positives = 166/269 (61%), Gaps = 49/269 (18%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP TRQ+IV LA SG RPCDISRIL+VSNGCVSKILGRYY TG +
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIR 67
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P+ IGGSKPR+ATP VV++IAQ K ECP++FAWEI+ +L +EG+CT D PSVSSINRVL
Sbjct: 68 PRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVL 127
Query: 121 RAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGS-ETPRGTHPGTG---------------- 162
R L E Q + + +L +GS T G +PGT
Sbjct: 128 RNLASEKQQMGADGMYDKL----RMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGG 183
Query: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKL 195
RNRT F+ Q EALEKEF+R YPD AR +L
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 196 ATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
A LPE ++VWFSNRRAKWRR+EKL+
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLR 272
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 235 bits (599), Expect = 5e-62
Identities = 139/283 (49%), Positives = 166/283 (58%), Gaps = 63/283 (22%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILK--------------VSNGCV 46
+NQLGG+FVNGRPLP TRQ+IV LA SG RPCDISRIL+ VSNGCV
Sbjct: 8 VNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNQNVSNGCV 67
Query: 47 SKILGRYYRTGVLEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCT 106
SKILGRYY TG + P+ IGGSKPR+ATP VV++IAQ K ECP++FAWEI+ +L +EG+CT
Sbjct: 68 SKILGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCT 127
Query: 107 QDKTPSVSSINRVLRAL-QEDQGLPCTRLRSPAVLAPAVLTPHSGS-ETPRGTHPGTG-- 162
D PSVSSINRVLR L E Q + + +L +GS T G +PGT
Sbjct: 128 NDNIPSVSSINRVLRNLASEKQQMGADGMYDKL----RMLNGQTGSWGTRPGWYPGTSVP 183
Query: 163 -----------------------------------------HRNRTIFSPSQAEALEKEF 181
RNRT F+ Q EALEKEF
Sbjct: 184 GQPTQDGCQQQEGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEF 243
Query: 182 QRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
+R YPD AR +LA LPE ++VWFSNRRAKWRR+EKL+
Sbjct: 244 ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 286
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 191 bits (485), Expect = 8e-49
Identities = 128/325 (39%), Positives = 167/325 (51%), Gaps = 43/325 (13%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKPR +ATP V +I + K E P +F+WEI+ +L +G C + PSVSSI+RV
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSVSSISRV 157
Query: 120 LRA------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSET---PRGTHPGTGHR 164
LR +ED G + +L GS+ P R
Sbjct: 158 LRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRR 217
Query: 165 NRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLK 224
+RT F+ Q E LEK F+R YPD R +LA T L E V+VWFSNRRA+WR+Q
Sbjct: 218 SRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ---- 273
Query: 225 WEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERCLS 284
GA+Q + PG P +P L P YQL +T P +S
Sbjct: 274 -----AGANQLAAFNHLL---------PGGFPPTGMPTLPP-----YQLPDSTYPTTTIS 314
Query: 285 DTPPKACLKPCWGHLPPQPNSLDSG 309
+P P P+++ G
Sbjct: 315 QDGGSTVHRP----QPLPPSTMHQG 335
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 187 bits (476), Expect = 9e-48
Identities = 125/342 (36%), Positives = 175/342 (51%), Gaps = 51/342 (14%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+L
Sbjct: 98 PGAIGGSKPKVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRIL 157
Query: 121 RA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG-----T 161
R+ + ++ + +L+ P S + + P
Sbjct: 158 RSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKRK 217
Query: 162 GHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQE 221
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ- 276
Query: 222 KLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATAP 279
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 277 --------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTSI 316
Query: 280 ERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 PQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 356
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 186 bits (472), Expect = 3e-47
Identities = 128/327 (39%), Positives = 167/327 (51%), Gaps = 45/327 (13%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPS--VSSIN 117
P IGGSKPR +ATP V +I + K E P +F+WEI+ +L +G C + PS VSSI+
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSIS 157
Query: 118 RVLRA------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSET---PRGTHPGTG 162
RVLR +ED G + +L GS+ P
Sbjct: 158 RVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQ 217
Query: 163 HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEK 222
R+RT F+ Q E LEK F+R YPD R +LA T L E V+VWFSNRRA+WR+Q
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ-- 275
Query: 223 LKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERC 282
GA+Q + PG P +P L P YQL +T P
Sbjct: 276 -------AGANQLAAFNHLL---------PGGFPPTGMPTLPP-----YQLPDSTYPTTT 314
Query: 283 LSDTPPKACLKPCWGHLPPQPNSLDSG 309
+S +P P P+++ G
Sbjct: 315 ISQDGGSTVHRP----QPLPPSTMHQG 337
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 186 bits (472), Expect = 3e-47
Identities = 128/327 (39%), Positives = 167/327 (51%), Gaps = 45/327 (13%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPS--VSSIN 117
P IGGSKPR +ATP V +I + K E P +F+WEI+ +L +G C + PS VSSI+
Sbjct: 98 PGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSIS 157
Query: 118 RVLRA------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSET---PRGTHPGTG 162
RVLR +ED G + +L GS+ P
Sbjct: 158 RVLRIKFGKKEEEDEADKKEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQ 217
Query: 163 HRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEK 222
R+RT F+ Q E LEK F+R YPD R +LA T L E V+VWFSNRRA+WR+Q
Sbjct: 218 RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ-- 275
Query: 223 LKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEPLGPSCYQLCWATAPERC 282
GA+Q + PG P +P L P YQL +T P
Sbjct: 276 -------AGANQLAAFNHLL---------PGGFPPTGMPTLPP-----YQLPDSTYPTTT 314
Query: 283 LSDTPPKACLKPCWGHLPPQPNSLDSG 309
+S +P P P+++ G
Sbjct: 315 ISQDGGSTVHRP----QPLPPSTMHQG 337
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 183 bits (464), Expect = 2e-46
Identities = 125/343 (36%), Positives = 175/343 (51%), Gaps = 52/343 (15%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
LR+ + ++ + +L+ P S + + P
Sbjct: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
Query: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
Query: 279 PERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 357
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 183 bits (464), Expect = 2e-46
Identities = 125/343 (36%), Positives = 175/343 (51%), Gaps = 52/343 (15%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
LR+ + ++ + +L+ P S + + P
Sbjct: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
Query: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
Query: 279 PERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 357
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 183 bits (464), Expect = 2e-46
Identities = 125/343 (36%), Positives = 175/343 (51%), Gaps = 52/343 (15%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
LR+ + ++ + +L+ P S + + P
Sbjct: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
Query: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
Query: 279 PERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 357
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 183 bits (464), Expect = 2e-46
Identities = 125/343 (36%), Positives = 175/343 (51%), Gaps = 52/343 (15%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
LR+ + ++ + +L+ P S + + P
Sbjct: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
Query: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
Query: 279 PERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 357
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 183 bits (464), Expect = 2e-46
Identities = 125/343 (36%), Positives = 175/343 (51%), Gaps = 52/343 (15%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA--------------LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETPRGTHPG----- 160
LR+ + ++ + +L+ P S + + P
Sbjct: 158 LRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEPDLPLKR 217
Query: 161 TGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQ 220
R+RT F+ Q E LE+ F+R YPD R +LA L E V+VWFSNRRA+WR+Q
Sbjct: 218 KQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQ 277
Query: 221 EKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALE--PLGPSCYQLCWATA 278
GA+Q + + PG P A+P L L + YQ T+
Sbjct: 278 ---------AGANQLMAFNHLI---------PGGFPPTAMPTLPTYQLSETSYQ---PTS 316
Query: 279 PERCLSDTPPKA----CLKPCWGH---LPPQPNSLDSGLLCLP 314
+ +SD L P H +P P+S S CLP
Sbjct: 317 IPQAVSDPSSTVHRPQPLPPSTVHQSTIPSNPDS--SSAYCLP 357
>gi|34878709 paired box protein 2 isoform c [Homo sapiens]
Length = 396
Score = 172 bits (436), Expect = 4e-43
Identities = 128/361 (35%), Positives = 175/361 (48%), Gaps = 68/361 (18%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
Query: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG---------- 162
R + P T + +P + P+ +P S S P G++ G
Sbjct: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGE 199
Query: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPD-----SV 190
H F+ Q EAL++ F+R YPD
Sbjct: 200 KRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPDVFQASEH 259
Query: 191 ARGKLATATSLPE-----DTVRVWFS---NRRAKWRRQEKLKWEMQLPGASQGLTVPRVA 242
+ + SLP D V+ S N + + T+P
Sbjct: 260 IKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSGTQTYPVVTGRDMASTTLPGYP 319
Query: 243 PGIISAQQSPGSVPTAALPALEP---LGPSCYQLCWATAPERCLSDTPPKACLKPCWGHL 299
P + Q GS PT+ L + P +GPS + + P R L++ PP C++P
Sbjct: 320 PHVPPTGQ--GSYPTSTLAGMVPEAAVGPSSSLM---SKPGRKLAEVPP--CVQPTGASS 372
Query: 300 P 300
P
Sbjct: 373 P 373
>gi|34878716 paired box protein 2 isoform d [Homo sapiens]
Length = 408
Score = 169 bits (429), Expect = 3e-42
Identities = 100/233 (42%), Positives = 131/233 (56%), Gaps = 45/233 (19%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
Query: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG---------- 162
R + P T + +P + P+ +P S S P G++ G
Sbjct: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGE 199
Query: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPD 188
H F+ Q EAL++ F+R YPD
Sbjct: 200 KRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
>gi|34878701 paired box protein 2 isoform b [Homo sapiens]
Length = 393
Score = 169 bits (429), Expect = 3e-42
Identities = 100/233 (42%), Positives = 131/233 (56%), Gaps = 45/233 (19%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
Query: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG---------- 162
R + P T + +P + P+ +P S S P G++ G
Sbjct: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSINGILGIPRSNGE 199
Query: 163 ---------------------------HRNRTIFSPSQAEALEKEFQRGQYPD 188
H F+ Q EAL++ F+R YPD
Sbjct: 200 KRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQLEALDRVFERPSYPD 252
>gi|34878699 paired box protein 2 isoform a [Homo sapiens]
Length = 416
Score = 165 bits (418), Expect = 5e-41
Identities = 89/170 (52%), Positives = 116/170 (68%), Gaps = 8/170 (4%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
Query: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG 162
R + P T + +P + P+ +P S S P G++ G
Sbjct: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSING 189
>gi|34878703 paired box protein 2 isoform e [Homo sapiens]
Length = 431
Score = 165 bits (418), Expect = 5e-41
Identities = 89/170 (52%), Positives = 116/170 (68%), Gaps = 8/170 (4%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRII 139
Query: 121 RALQEDQGLPC-----TRLRSPA-VLAPAVLTP--HSGSETPRGTHPGTG 162
R + P T + +P + P+ +P S S P G++ G
Sbjct: 140 RTKVQQPFHPTPDGAGTGVTAPGHTIVPSTASPPVSSASNDPVGSYSING 189
>gi|7524365 paired box 8 isoform PAX8D [Homo sapiens]
Length = 321
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
Query: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
R +Q+ LP + L+P S + TP
Sbjct: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
>gi|7669542 paired box 8 isoform PAX8E [Homo sapiens]
Length = 287
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
Query: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
R +Q+ LP + L+P S + TP
Sbjct: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
Query: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
R +Q+ LP + L+P S + TP
Sbjct: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
>gi|7524361 paired box 8 isoform PAX8B [Homo sapiens]
Length = 387
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
Query: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
R +Q+ LP + L+P S + TP
Sbjct: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
>gi|5803117 paired box 8 isoform PAX8A [Homo sapiens]
Length = 450
Score = 164 bits (415), Expect = 1e-40
Identities = 86/155 (55%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG +
Sbjct: 13 LNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +I K + P +FAWEI+ +L AEG+C D PSVSSINR++
Sbjct: 73 PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRII 132
Query: 121 RA-LQEDQGLPCTRLRSPAVLAPAVLTPHSGSETP 154
R +Q+ LP + L+P S + TP
Sbjct: 133 RTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTP 167
>gi|9951920 paired box 5 [Homo sapiens]
Length = 391
Score = 160 bits (406), Expect = 1e-39
Identities = 78/121 (64%), Positives = 97/121 (80%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP RQ+IV LA G+RPCDISR L+VS+GCVSKILGRYY TG ++
Sbjct: 20 VNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKP++ATP VV +IA+ K + P +FAWEI+ +L AE +C D PSVSSINR++
Sbjct: 80 PGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRII 139
Query: 121 R 121
R
Sbjct: 140 R 140
>gi|7242167 paired box 9 [Homo sapiens]
Length = 341
Score = 145 bits (365), Expect = 7e-35
Identities = 73/121 (60%), Positives = 89/121 (73%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP R +IV LA G+RPCDISR L+VS+GCVSKIL RY TG +
Sbjct: 8 VNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 67
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKPR+ TP VV I K P +FAWEI+ +L A+G+C + PSVSSI+R+L
Sbjct: 68 PGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 127
Query: 121 R 121
R
Sbjct: 128 R 128
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 144 bits (363), Expect = 1e-34
Identities = 73/121 (60%), Positives = 89/121 (73%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+FVNGRPLP R +IV LA G+RPCDISR L+VS+GCVSKIL RY TG +
Sbjct: 102 VNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSIL 161
Query: 61 PKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVL 120
P IGGSKPR+ TP VV I K P +FAWEI+ +L A+G+C + PSVSSI+R+L
Sbjct: 162 PGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRIL 221
Query: 121 R 121
R
Sbjct: 222 R 222
>gi|7524356 paired box 3 isoform PAX3b [Homo sapiens]
Length = 206
Score = 134 bits (336), Expect = 2e-31
Identities = 66/123 (53%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA 122
LR+
Sbjct: 158 LRS 160
>gi|6654638 paired box 3 isoform PAX3a [Homo sapiens]
Length = 215
Score = 134 bits (336), Expect = 2e-31
Identities = 66/123 (53%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
Query: 1 MNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRILKVSNGCVSKILGRYYRTGVLE 60
+NQLGG+F+NGRPLP R +IV +A G+RPC ISR L+VS+GCVSKIL RY TG +
Sbjct: 38 VNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIR 97
Query: 61 PKGIGGSKPR-LATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRV 119
P IGGSKP+ + TP V +I + K E P +F+WEI+ +L + +C ++ PSVSSI+R+
Sbjct: 98 PGAIGGSKPKQVTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDAVCDRNTVPSVSSISRI 157
Query: 120 LRA 122
LR+
Sbjct: 158 LRS 160
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 82.4 bits (202), Expect = 5e-16
Identities = 71/187 (37%), Positives = 85/187 (45%), Gaps = 23/187 (12%)
Query: 149 SGSETPRGTHPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRV 208
S E P+ H RNRT F+ Q LE+ F++ YPD +R +LA +LPE V+V
Sbjct: 127 SEEEQPKKKH----RRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 182
Query: 209 WFSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQSP--------GSVPTAAL 260
WF NRRAKWRRQEKL+ S L+ R P SA SP G AL
Sbjct: 183 WFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPP---SATLSPLGAGPGSGGGPAGGAL 239
Query: 261 PALEPLGPSCYQLCWATAPERCLSDTPPKACLKPCWGHLPPQPNSLDS-----GL--LCL 313
P LGP ATA + PP L + PP P L+S GL L
Sbjct: 240 PLESWLGPP-LPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAP 298
Query: 314 PCPSSHC 320
P PS C
Sbjct: 299 PPPSYPC 305
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 78.6 bits (192), Expect = 8e-15
Identities = 50/120 (41%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 150 GSETPRGTHPGTGHRNRTIFSPSQAEALEKEFQRGQYPDSVARGKLATATSLPEDTVRVW 209
G E P+ H RNRT F+ Q LE+ F+ YPD +R +LA LPE V+VW
Sbjct: 19 GEEAPKKKH----RRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVW 74
Query: 210 FSNRRAKWRRQEKLKWEMQLPGASQGLTVPRVAPGIISAQQSPGSVPTAALPALEP-LGP 268
F NRRAKWRRQE+L+ S + PR+ A P + P A LEP LGP
Sbjct: 75 FQNRRAKWRRQERLE------SGSGAVAAPRLP----EAPALPFARPPAMSLPLEPWLGP 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,416,506
Number of Sequences: 37866
Number of extensions: 912190
Number of successful extensions: 3455
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 3005
Number of HSP's gapped (non-prelim): 486
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.