Guide to the Human Genome
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Name: LOC100128893 Sequence: fasta or formatted (82aa) NCBI GI: 239757041
Description:

PREDICTED: hypothetical protein LOC100128893

Not currently referenced in the text

Other entries for this name:
alt mRNA {82aa} PREDICTED: hypothetical protein LOC100128893
alt mRNA {82aa} PREDICTED: hypothetical protein LOC100128893
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0          9           2
 C cysteine            1.2          1           1
 D aspartate           6.1          5           1
 E glutamate           2.4          2           1
 F phenylalanine       6.1          5           1
 G glycine            11.0          9           2
 H histidine           1.2          1           1
 I isoleucine          4.9          4           1
 K lysine              4.9          4           1
 L leucine             6.1          5           1
 M methionine          2.4          2           1
 N asparagine          3.7          3           1
 P proline             4.9          4           2
 Q glutamine           1.2          1           1
 R arginine            9.8          8           1
 S serine              8.5          7           2
 T threonine           7.3          6           1
 V valine              3.7          3           1
 W tryptophan          1.2          1           1
 Y tyrosine            2.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100128893 
LOC100128893          1.000   PREDICTED: hypothetical protein LOC100128893 
LOC100128893          1.000   PREDICTED: hypothetical protein LOC100128893 
GRHL2                 0.035   transcription factor CP2-like 3 
LOC100292566          0.021   PREDICTED: hypothetical protein 
LOC100291188          0.021   PREDICTED: hypothetical protein XP_002348260 
LOC100287511          0.021   PREDICTED: hypothetical protein XP_002342250 
OTUD7A                0.014   OTU domain containing 7A 
LOC100287104          0.014   PREDICTED: hypothetical protein XP_002343630 
COL11A2               0.014   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.014   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.014   collagen, type XI, alpha 2 isoform 1 preproprotein ...
TWIST1                0.014   twist 
LOC729370             0.014   PREDICTED: hypothetical protein 
TMEM151B              0.014   transmembrane protein 151B 
MPRIP                 0.007   myosin phosphatase-Rho interacting protein isoform 2...
MPRIP                 0.007   myosin phosphatase-Rho interacting protein isoform 1...
OBSCN                 0.007   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100130884          0.007   PREDICTED: hypothetical protein 
LOC100130884          0.007   PREDICTED: hypothetical protein 
LOC100130884          0.007   PREDICTED: hypothetical protein 
C4orf46               0.007   hypothetical protein LOC201725 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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