Guide to the Human Genome
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Name: CYP26A1 Sequence: fasta or formatted (428aa) NCBI GI: 16933528
Description:

cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 2

Referenced in:

Cytochrome P450 Enzymes
Stem Cells and Early Development

Other entries for this name:
alt prot [497aa] cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         23           2
 C cysteine            2.6         11           1
 D aspartate           3.5         15           1
 E glutamate           7.7         33           2
 F phenylalanine       4.7         20           1
 G glycine             7.7         33           3
 H histidine           3.3         14           1
 I isoleucine          5.8         25           1
 K lysine              5.8         25           2
 L leucine            11.9         51           2
 M methionine          2.6         11           1
 N asparagine          3.3         14           1
 P proline             4.9         21           2
 Q glutamine           3.5         15           2
 R arginine            7.2         31           2
 S serine              6.1         26           2
 T threonine           4.4         19           2
 V valine              5.8         25           1
 W tryptophan          1.2          5           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 26, subfamily A, polypeptide... 
CYP26A1               1.000   cytochrome P450, family 26, subfamily A, polypeptide...
CYP26B1               0.388   cytochrome P450, family 26, subfamily b, polypeptide ...
CYP26C1               0.380   cytochrome P450, family 26, subfamily C, polypeptide...
CYP4V2                0.106   cytochrome P450, family 4, subfamily v, polypeptide...
CYP4A11               0.100   cytochrome P450, family 4, subfamily A, polypeptide...
CYP4A22               0.099   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP51A1               0.098   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP51A1               0.092   cytochrome P450, family 51, subfamily A, polypeptid...
CYP4F3                0.091   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F11               0.089   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.089   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F2                0.085   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4F12               0.085   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F22               0.084   cytochrome P450, family 4, subfamily F, polypeptide...
CYP46A1               0.083   cytochrome P450, family 46 
CYP4X1                0.083   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP4B1                0.081   cytochrome P450, family 4, subfamily B, polypeptide...
CYP3A43               0.081   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A7                0.079   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP4F8                0.079   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP4B1                0.078   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4Z1                0.078   cytochrome P450 4Z1 
CYP3A4                0.077   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.076   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A5                0.073   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP24A1               0.072   cytochrome P450 family 24 subfamily A polypeptide 1 ...
CYP27C1               0.072   cytochrome P450, family 27, subfamily C, polypeptid...
CYP2S1                0.067   cytochrome P450, family 2, subfamily S, polypeptide ...
CYP27B1               0.066   cytochrome P450, family 27, subfamily B, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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