Guide to the Human Genome
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Name: CYP26C1 Sequence: fasta or formatted (522aa) NCBI GI: 62952502
Description:

cytochrome P450, family 26, subfamily C, polypeptide 1

Referenced in:

Cytochrome P450 Enzymes
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         58           2
 C cysteine            2.1         11           1
 D aspartate           3.1         16           1
 E glutamate           6.1         32           2
 F phenylalanine       4.0         21           2
 G glycine             9.0         47           3
 H histidine           3.6         19           1
 I isoleucine          2.7         14           2
 K lysine              2.1         11           1
 L leucine            14.8         77           4
 M methionine          1.3          7           1
 N asparagine          0.6          3           1
 P proline             6.1         32           3
 Q glutamine           3.1         16           1
 R arginine            9.2         48           4
 S serine              7.1         37           2
 T threonine           4.2         22           2
 V valine              6.3         33           2
 W tryptophan          1.7          9           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 26, subfamily C, polypeptide... 
CYP26B1               0.497   cytochrome P450, family 26, subfamily b, polypeptide ...
CYP26A1               0.359   cytochrome P450, family 26, subfamily A, polypeptide...
CYP26A1               0.314   cytochrome P450, family 26, subfamily A, polypeptide...
CYP3A43               0.078   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.074   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4V2                0.069   cytochrome P450, family 4, subfamily v, polypeptide...
CYP3A4                0.064   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A5                0.061   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP21A2               0.060   cytochrome P450, family 21, subfamily A, polypeptide...
CYP3A7                0.058   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP51A1               0.057   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP21A2               0.056   cytochrome P450, family 21, subfamily A, polypeptid...
CYP46A1               0.056   cytochrome P450, family 46 
CYP3A43               0.053   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP2S1                0.050   cytochrome P450, family 2, subfamily S, polypeptide ...
CYP4A11               0.049   cytochrome P450, family 4, subfamily A, polypeptide...
CYP4A22               0.049   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP51A1               0.048   cytochrome P450, family 51, subfamily A, polypeptid...
CYP27B1               0.047   cytochrome P450, family 27, subfamily B, polypeptide ...
CYP4F3                0.047   cytochrome P450, family 4, subfamily F, polypeptide...
CYP2B6                0.047   cytochrome P450, family 2, subfamily B, polypeptide 6...
CYP4B1                0.047   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4B1                0.047   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4F22               0.047   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F2                0.046   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4X1                0.045   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP4F11               0.044   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.044   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F12               0.043   cytochrome P450, family 4, subfamily F, polypeptide...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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