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Search of human proteins with 169217724
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
(193 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169217724 PREDICTED: similar to methyl-CpG binding domain pro... 387 e-108
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 385 e-107
gi|211059437 hypothetical protein LOC284428 [Homo sapiens] 381 e-106
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 379 e-105
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 377 e-105
gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like ... 376 e-105
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi... 107 5e-24
gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens] 82 4e-16
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 79 3e-15
gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens] 36 0.023
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 34 0.068
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788730 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788720 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
gi|193794828 calcium channel, voltage-dependent, L type, alpha 1... 33 0.12
>gi|169217724 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2, partial [Homo sapiens]
Length = 193
Score = 387 bits (995), Expect = e-108
Identities = 193/193 (100%), Positives = 193/193 (100%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV
Sbjct: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
Query: 181 DRLARRAEMLTGG 193
DRLARRAEMLTGG
Sbjct: 181 DRLARRAEMLTGG 193
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 385 bits (988), Expect = e-107
Identities = 191/193 (98%), Positives = 192/193 (99%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
Query: 181 DRLARRAEMLTGG 193
DRLARRAEMLTGG
Sbjct: 196 DRLARRAEMLTGG 208
>gi|211059437 hypothetical protein LOC284428 [Homo sapiens]
Length = 208
Score = 381 bits (978), Expect = e-106
Identities = 189/193 (97%), Positives = 191/193 (98%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
R PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
Query: 181 DRLARRAEMLTGG 193
DRLAR+AEMLTGG
Sbjct: 196 DRLARQAEMLTGG 208
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 379 bits (972), Expect = e-105
Identities = 188/191 (98%), Positives = 190/191 (99%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
Query: 181 DRLARRAEMLT 191
DRLAR+AEMLT
Sbjct: 196 DRLARQAEMLT 206
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 377 bits (967), Expect = e-105
Identities = 187/189 (98%), Positives = 188/189 (99%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 136 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
Query: 181 DRLARRAEM 189
DRLARRAEM
Sbjct: 196 DRLARRAEM 204
>gi|89051032 PREDICTED: methyl-CpG-binding domain protein 3-like
4-like [Homo sapiens]
Length = 208
Score = 376 bits (966), Expect = e-105
Identities = 187/191 (97%), Positives = 189/191 (98%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR
Sbjct: 16 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 75
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
KGDEHLEKPQQLCAYR+LQALQPCSSQGEGSSPLHLESVLSILAPGTA ESLDRAGAERV
Sbjct: 76 KGDEHLEKPQQLCAYRRLQALQPCSSQGEGSSPLHLESVLSILAPGTAGESLDRAGAERV 135
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 180
R PLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA
Sbjct: 136 RIPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQLVTPADIRRQARRVKKARERLAKALQA 195
Query: 181 DRLARRAEMLT 191
DRLAR+AEMLT
Sbjct: 196 DRLARQAEMLT 206
>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
Length = 194
Score = 107 bits (268), Expect = 5e-24
Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 13 QKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQL 72
Q+K+ + + + +++P+R++S F+RPVTRI HP N+VR + +E LEKPQQ+
Sbjct: 6 QRKQRDCVNQCKSKPGLSTSIPLRMSSYTFKRPVTRITPHPGNEVRYHQWEESLEKPQQV 65
Query: 73 CAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESL--DRAGAERVRSPLEPTPGR 130
C R+LQ LQ SS GE SS L L + L L P SL D A P+
Sbjct: 66 CWQRRLQGLQAYSSAGELSSTLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACS 125
Query: 131 FPAVAGGPTPGMGCQLPPPLSGQ-LVTPADIRRQARRVKKARERLAKALQADRLARRAE 188
AV P G+G + L Q LVT DIR+Q +VK RERLA AL AD LA AE
Sbjct: 126 SDAVEIIPAEGVG--ISQLLCKQFLVTEEDIRKQEGKVKTVRERLAIALIADGLANEAE 182
>gi|4505119 methyl-CpG binding domain protein 3 [Homo sapiens]
Length = 291
Score = 81.6 bits (200), Expect = 4e-16
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 3/194 (1%)
Query: 1 GKLKRNMMPWALQKKREIHMAKAHRRRAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRR 60
GK+ + M + Q+ R + + +ALP+R T+ IF++PVT+I +HP N+V +
Sbjct: 67 GKMLMSKMNKSRQRVRYDSSNQVKGKPDLNTALPVRQTASIFKQPVTKITNHPSNKV-KS 125
Query: 61 KGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERV 120
+ +++P+QL +KL L E + L L + PG E+L A A +
Sbjct: 126 DPQKAVDQPRQLFWEKKLSGLNAFDIAEELVKTMDLPKGLQGVGPGCTDETLLSAIASAL 185
Query: 121 RSPLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQ 179
+ P G+ A A PG+ PL +VT DIR+Q V++ R+RL +AL
Sbjct: 186 HTSTMPITGQLSA-AVEKNPGVWLNTTQPLCKAFMVTDEDIRKQEELVQQVRKRLEEALM 244
Query: 180 ADRLARRAEMLTGG 193
AD LA E+ G
Sbjct: 245 ADMLAHVEELARDG 258
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 78.6 bits (192), Expect = 3e-15
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 7 MMPWALQK-KREIHMAKAHRRRAA---RSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKG 62
MMP LQK K+ + ++ + + LP+R T+ IF++PVT++ +HP N+V +
Sbjct: 213 MMPSKLQKNKQRLRNDPLNQNKGKPDLNTTLPIRQTASIFKQPVTKVTNHPSNKV-KSDP 271
Query: 63 DEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASESLDRAGAERVRS 122
E+P+QL ++LQ L + + L L + PG+ E+L A A + +
Sbjct: 272 QRMNEQPRQLFWEKRLQGLSASDVTEQIIKTMELPKGLQGVGPGSNDETLLSAVASALHT 331
Query: 123 PLEPTPGRFPAVAGGPTPGMGCQLPPPL-SGQLVTPADIRRQARRVKKARERLAKALQAD 181
P G+ A A P + PL +VT DIR+Q RV++ R++L +AL AD
Sbjct: 332 SSAPITGQVSA-AVEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMAD 390
Query: 182 RLARRAE 188
L+R A+
Sbjct: 391 ILSRAAD 397
>gi|5902064 rabphilin 3A-like (without C2 domains) [Homo sapiens]
Length = 315
Score = 35.8 bits (81), Expect = 0.023
Identities = 32/97 (32%), Positives = 39/97 (40%), Gaps = 14/97 (14%)
Query: 53 PDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPG-TASES 111
P VR RKGD KP +++ G P HL S LA G T + S
Sbjct: 226 PSTGVRDRKGD----KP-----WKESGGSVEAPRMGFTHPPGHLSGCQSSLASGETGTGS 276
Query: 112 LDRAGAERV----RSPLEPTPGRFPAVAGGPTPGMGC 144
D G R R+P++ TPGR PA P C
Sbjct: 277 ADPPGGPRPGLTRRAPVKDTPGRAPAADAAPAGPSSC 313
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 34.3 bits (77), Expect = 0.068
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 51 SHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSSQGEGSSPLHLESVLSILAPGTASE 110
SH D D HL P L + Q P G++ L SV AP AS+
Sbjct: 424 SHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPAASK 483
Query: 111 SLDRAGAERVRSPLEPTPGRFPAVAGGPTPGMGCQLPPPLSGQ 153
A V SP+ +P + GP C LPP G+
Sbjct: 484 ------APVVPSPVLQSPSEGLGMGAGP----ACPLPPLAGGE 516
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1709 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1764
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1765 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1821
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1822 HGPPLSPAIRVQEV 1835
>gi|193788730 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 4 [Homo sapiens]
Length = 2173
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1722 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1777
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1778 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1834
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1835 HGPPLSPAIRVQEV 1848
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855
>gi|193788720 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 1 [Homo sapiens]
Length = 2221
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1729 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1784
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1785 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1841
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1842 HGPPLSPAIRVQEV 1855
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1670 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1725
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1726 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1782
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1783 HGPPLSPAIRVQEV 1796
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1678 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1733
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1734 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1790
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1791 HGPPLSPAIRVQEV 1804
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1681 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1736
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1737 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1793
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1794 HGPPLSPAIRVQEV 1807
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1687 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1742
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1743 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1799
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1800 HGPPLSPAIRVQEV 1813
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1801
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1802 HGPPLSPAIRVQEV 1815
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1689 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1744
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1745 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1801
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1802 HGPPLSPAIRVQEV 1815
>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 10 [Homo sapiens]
Length = 2155
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1698 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1753
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1754 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1810
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1811 HGPPLSPAIRVQEV 1824
>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 9 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1700 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1755
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1756 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1812
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1813 HGPPLSPAIRVQEV 1826
>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 8 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1700 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1755
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1756 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1812
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1813 HGPPLSPAIRVQEV 1826
>gi|193794828 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 7 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 0.12
Identities = 37/134 (27%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 27 RAARSALPMRLTSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRKLQALQPCSS 86
+A + A+ IFRR +H V + D PQ R L + SS
Sbjct: 1700 KAMKEAVSAASEDDIFRRAGGLFGNH----VSYYQSDGRSAFPQTFTTQRPLHINKAGSS 1755
Query: 87 QGEGSSPLHLESVLSILAPGTASESLDRAGAERVRSPLEPTPGRFPAVAGGPT-----PG 141
QG+ SP H + V S P + S + A + + GR P AG P+ G
Sbjct: 1756 QGDTESPSHEKLVDSTFTPSSYSSTGSNA---NINNANNTALGRLPRPAGYPSTVSTVEG 1812
Query: 142 MGCQLPPPLSGQLV 155
G L P + Q V
Sbjct: 1813 HGPPLSPAIRVQEV 1826
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,493,858
Number of Sequences: 37866
Number of extensions: 462060
Number of successful extensions: 2396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 2262
Number of HSP's gapped (non-prelim): 246
length of query: 193
length of database: 18,247,518
effective HSP length: 97
effective length of query: 96
effective length of database: 14,574,516
effective search space: 1399153536
effective search space used: 1399153536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.