Guide to the Human Genome
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Search of human proteins with 169217153

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169217153 PREDICTED: similar to EEF1A1 protein [Homo
sapiens]
         (105 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169217153 PREDICTED: similar to EEF1A1 protein [Homo sapiens]      221   1e-58
gi|113430525 PREDICTED: similar to EEF1A1 protein [Homo sapiens]      221   1e-58
gi|113429979 PREDICTED: similar to EEF1A1 protein [Homo sapiens]      221   1e-58
gi|4503471 eukaryotic translation elongation factor 1 alpha 1 [H...   125   7e-30
gi|239757543 PREDICTED: similar to eukaryotic translation elonga...   124   2e-29
gi|4503475 eukaryotic translation elongation factor 1 alpha 2 [H...   124   2e-29
gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform...    67   2e-12
gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1...    67   2e-12
gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]       58   1e-09
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]       58   1e-09
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]       58   1e-09
gi|46094014 peptide chain release factor 3 [Homo sapiens]              57   3e-09
gi|34147630 Tu translation elongation factor, mitochondrial prec...    30   0.41 
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             28   1.2  
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof...    28   1.5  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   1.5  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   1.5  
gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [H...    27   3.4  
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]                  27   3.4  
gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]            26   5.9  
gi|9945308 ATP-binding cassette, sub-family D, member 2 [Homo sa...    26   7.7  

>gi|169217153 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
          Length = 105

 Score =  221 bits (563), Expect = 1e-58
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
           MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60

Query: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
           CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105


>gi|113430525 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
          Length = 105

 Score =  221 bits (563), Expect = 1e-58
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
           MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60

Query: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
           CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105


>gi|113429979 PREDICTED: similar to EEF1A1 protein [Homo sapiens]
          Length = 105

 Score =  221 bits (563), Expect = 1e-58
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60
           MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE
Sbjct: 1   MGKEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAE 60

Query: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105
           CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL
Sbjct: 61  CECGVTIDISPWKFETSKQWTRLLLELTRSPNIPRKLRSLNAYYL 105


>gi|4503471 eukaryotic translation elongation factor 1 alpha 1
          [Homo sapiens]
          Length = 462

 Score =  125 bits (314), Expect = 7e-30
 Identities = 63/90 (70%), Positives = 70/90 (77%), Gaps = 6/90 (6%)

Query: 1  MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
          MGKEK HI+I VIGH DSGK TT GHL+      DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
           KLKAE E G+TIDIS WKFETSK +  ++
Sbjct: 61 DKLKAERERGITIDISLWKFETSKYYVTII 90


>gi|239757543 PREDICTED: similar to eukaryotic translation
          elongation factor 1 alpha 2 [Homo sapiens]
          Length = 444

 Score =  124 bits (310), Expect = 2e-29
 Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 6/90 (6%)

Query: 1  MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
          MGKEK HI+I VIGH DSGK TT GHL+      DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
           KLKAE E G+TIDIS WKFET+K +  ++
Sbjct: 61 DKLKAERERGITIDISLWKFETTKYYITII 90


>gi|4503475 eukaryotic translation elongation factor 1 alpha 2
          [Homo sapiens]
          Length = 463

 Score =  124 bits (310), Expect = 2e-29
 Identities = 62/90 (68%), Positives = 70/90 (77%), Gaps = 6/90 (6%)

Query: 1  MGKEKAHISITVIGHQDSGKPTTNGHLV------DKRTIENFEKDAAEMGKGFFKYAWVL 54
          MGKEK HI+I VIGH DSGK TT GHL+      DKRTIE FEK+AAEMGKG FKYAWVL
Sbjct: 1  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL 60

Query: 55 HKLKAECECGVTIDISPWKFETSKQWTRLL 84
           KLKAE E G+TIDIS WKFET+K +  ++
Sbjct: 61 DKLKAERERGITIDISLWKFETTKYYITII 90


>gi|223555963 Hsp70 subfamily B suppressor 1-like protein isoform 2
           [Homo sapiens]
          Length = 642

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 5   KAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKLK 58
           K  +++ VIGH D+GK T  GH+      ++KRT+  +E+++ + GK  F YAWVL +  
Sbjct: 216 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 275

Query: 59  AECECGVTIDISPWKFETSKQWTRLL 84
            E E GVT+D+   KFET+ +   L+
Sbjct: 276 EERERGVTMDVGMTKFETTTKVITLM 301


>gi|5729864 Hsp70 subfamily B suppressor 1-like protein isoform 1
           [Homo sapiens]
          Length = 684

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 5   KAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKLK 58
           K  +++ VIGH D+GK T  GH+      ++KRT+  +E+++ + GK  F YAWVL +  
Sbjct: 258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETG 317

Query: 59  AECECGVTIDISPWKFETSKQWTRLL 84
            E E GVT+D+   KFET+ +   L+
Sbjct: 318 EERERGVTMDVGMTKFETTTKVITLM 343


>gi|194018522 G1 to S phase transition 1 isoform 3 [Homo sapiens]
          Length = 499

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 4   EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
           +K H+++  IGH D+GK T  G +      VDKRT+E +E++A E  +  +  +W L   
Sbjct: 71  KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 130

Query: 58  KAECECGVTIDISPWKFETSKQWTRLL 84
           + E + G T+++    FET K+   +L
Sbjct: 131 QEERDKGKTVEVGRAYFETEKKHFTIL 157


>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
          Length = 636

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 4   EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
           +K H+++  IGH D+GK T  G +      VDKRT+E +E++A E  +  +  +W L   
Sbjct: 208 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 267

Query: 58  KAECECGVTIDISPWKFETSKQWTRLL 84
           + E + G T+++    FET K+   +L
Sbjct: 268 QEERDKGKTVEVGRAYFETEKKHFTIL 294


>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
          Length = 637

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 4   EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
           +K H+++  IGH D+GK T  G +      VDKRT+E +E++A E  +  +  +W L   
Sbjct: 209 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 268

Query: 58  KAECECGVTIDISPWKFETSKQWTRLL 84
           + E + G T+++    FET K+   +L
Sbjct: 269 QEERDKGKTVEVGRAYFETEKKHFTIL 295


>gi|46094014 peptide chain release factor 3 [Homo sapiens]
          Length = 628

 Score = 57.0 bits (136), Expect = 3e-09
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 4   EKAHISITVIGHQDSGKPTTNGHL------VDKRTIENFEKDAAEMGKGFFKYAWVLHKL 57
           +K H+++  IGH D+GK T  G +      VDKRT+E +E++A E  +  +  +W L   
Sbjct: 200 KKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTN 259

Query: 58  KAECECGVTIDISPWKFETSKQWTRLL 84
           + E + G T+++    FET ++   +L
Sbjct: 260 QEERDKGKTVEVGRAYFETERKHFTIL 286


>gi|34147630 Tu translation elongation factor, mitochondrial
           precursor [Homo sapiens]
          Length = 455

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 3   KEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAEMGKGFFKYAWVLHKLKAECE 62
           ++K H+++  IGH D GK T    +          K  AE G   FK    +     E  
Sbjct: 56  RDKPHVNVGTIGHVDHGKTTLTAAIT---------KILAEGGGAKFKKYEEIDNAPEERA 106

Query: 63  CGVTIDISPWKFETS 77
            G+TI+ +  ++ T+
Sbjct: 107 RGITINAAHVEYSTA 121


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 9   SITVIGHQDSGKPTTNGHLVDKRTIENFEKDAAE 42
           +IT +GH+  GK   NG + D+R   NF+ +  E
Sbjct: 430 TITALGHE--GKQLVNGEVSDERVAPNFKTEPIE 461


>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform 4
            [Homo sapiens]
          Length = 3321

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 33   IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
            ++N + D  +  +   K+  + ++L  EC   VT  ++    E + +W  LL E+     
Sbjct: 1697 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 1756

Query: 93   IPRKLRSL 100
              + L  L
Sbjct: 1757 SSKALLQL 1764


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 33   IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
            ++N + D  +  +   K+  + ++L  EC   VT  ++    E + +W  LL E+     
Sbjct: 7102 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 7161

Query: 93   IPRKLRSL 100
              + L  L
Sbjct: 7162 SSKALLQL 7169


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 15/68 (22%), Positives = 30/68 (44%)

Query: 33   IENFEKDAAEMGKGFFKYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLELTRSPN 92
            ++N + D  +  +   K+  + ++L  EC   VT  ++    E + +W  LL E+     
Sbjct: 7173 LQNLQDDLEKQERSLQKFGSITNQLLKECHPPVTETLTNTLKEVNMRWNNLLEEIAEQLQ 7232

Query: 93   IPRKLRSL 100
              + L  L
Sbjct: 7233 SSKALLQL 7240


>gi|7262393 ATP-binding cassette, sub-family D (ALD), member 1 [Homo
           sapiens]
          Length = 745

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 30  KRTIENFEKDAAEMGKGFF---KYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLE 86
           K  +   EK    M + F+   KYA     L  EC   V+ID+    F+ +K     LL 
Sbjct: 602 KDVLSGGEKQRIGMARMFYHRPKYA-----LLDECTSAVSIDVEGKIFQAAKDAGIALLS 656

Query: 87  LTRSPNI 93
           +T  P++
Sbjct: 657 ITHRPSL 663


>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
          Length = 1966

 Score = 26.9 bits (58), Expect = 3.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 3    KEKAHISITVIGHQDSGKPTTNGHLVDKRTIENFE 37
            + K H+ +T+I + D GK   NG ++ ++  E +E
Sbjct: 1250 QRKEHLHLTIIQNFDRGKCWENGIILCRKIAEQYE 1284


>gi|24119166 retinoblastoma binding protein 9 [Homo sapiens]
          Length = 186

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 39  DAAEMGKGFFKYAWVLHKLKAEC----ECGVTID-ISPWK 73
           D  E   G+F   W   K+KA C    + G T D   PWK
Sbjct: 105 DENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWK 144


>gi|9945308 ATP-binding cassette, sub-family D, member 2 [Homo
           sapiens]
          Length = 740

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 30  KRTIENFEKDAAEMGKGFF---KYAWVLHKLKAECECGVTIDISPWKFETSKQWTRLLLE 86
           K  +   EK    M + F+   KYA     L  EC   V+ID+    F+ +K     LL 
Sbjct: 606 KDVLSGGEKQRMGMARMFYHKPKYA-----LLDECTSAVSIDVEGKIFQAAKGAGISLLS 660

Query: 87  LTRSPNI 93
           +T  P++
Sbjct: 661 ITHRPSL 667


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,118,745
Number of Sequences: 37866
Number of extensions: 151540
Number of successful extensions: 300
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 21
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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