Guide to the Human Genome
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Search of human proteins with 169216709

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169216709 PREDICTED: hypothetical protein [Homo sapiens]
         (108 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169216709 PREDICTED: hypothetical protein [Homo sapiens]           215   5e-57
gi|221136769 hypothetical protein LOC100129239 [Homo sapiens]         215   5e-57
gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo sap...    45   2e-05
gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo sap...    45   2e-05
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]     39   0.001
gi|168229156 NFKB activating protein [Homo sapiens]                    38   0.002
gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]            38   0.002
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]             38   0.002
gi|56090620 NFKB activating protein-like [Homo sapiens]                38   0.002
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        37   0.004
gi|4885379 histone cluster 1, H1e [Homo sapiens]                       36   0.006
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]       36   0.008
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]             36   0.008
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    36   0.008
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    36   0.008
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     35   0.010
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     35   0.013
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]            34   0.022
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]             34   0.022
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ...    34   0.029
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]            33   0.038
gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo sapi...    33   0.049
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    33   0.049
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho...    33   0.065
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             33   0.065
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             33   0.065
gi|56676397 ankyrin repeat domain 11 [Homo sapiens]                    32   0.084
gi|62460633 RNA-binding motif protein 16 [Homo sapiens]                32   0.084
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    32   0.084

>gi|169216709 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 108

 Score =  215 bits (548), Expect = 5e-57
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60
           MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS
Sbjct: 1   MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60

Query: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108
           SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL
Sbjct: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108


>gi|221136769 hypothetical protein LOC100129239 [Homo sapiens]
          Length = 108

 Score =  215 bits (548), Expect = 5e-57
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60
           MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS
Sbjct: 1   MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60

Query: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108
           SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL
Sbjct: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108


>gi|113430626 PREDICTED: hypothetical protein LOC729078 [Homo
           sapiens]
          Length = 161

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 1   MAKVTSEPQKPNEDVDEQTPSTSS----TKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPL 56
           MAK T  P KP E++ +   ST      TK +K+ K   Q+++    K  K   K K+PL
Sbjct: 1   MAKETHTPVKPKENMKQPILSTKKPTPRTKEKKEKKNSSQQKTNKNGKVEKKIIKVKKPL 60

Query: 57  RGSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
           + +S +K     + + KP+    P +   +H+  +   K +  K + +
Sbjct: 61  QRNSRKKTQSPPSCSKKPRITMRPTIFVCHHKQNKTQHKNQKSKHKRQ 108



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 64  AGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
           A ET+TP    +  + PIL  +    + K KKE+ +  Q +T+
Sbjct: 2   AKETHTPVKPKENMKQPILSTKKPTPRTKEKKEKKNSSQQKTN 44


>gi|113430146 PREDICTED: hypothetical protein LOC729078 [Homo
           sapiens]
          Length = 161

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 1   MAKVTSEPQKPNEDVDEQTPSTSS----TKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPL 56
           MAK T  P KP E++ +   ST      TK +K+ K   Q+++    K  K   K K+PL
Sbjct: 1   MAKETHTPVKPKENMKQPILSTKKPTPRTKEKKEKKNSSQQKTNKNGKVEKKIIKVKKPL 60

Query: 57  RGSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
           + +S +K     + + KP+    P +   +H+  +   K +  K + +
Sbjct: 61  QRNSRKKTQSPPSCSKKPRITMRPTIFVCHHKQNKTQHKNQKSKHKRQ 108



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 64  AGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
           A ET+TP    +  + PIL  +    + K KKE+ +  Q +T+
Sbjct: 2   AKETHTPVKPKENMKQPILSTKKPTPRTKEKKEKKNSSQQKTN 44


>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
          Length = 484

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 2   AKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSR---SGVKGLKTTRKAKRPLRG 58
           +K   + ++  E    +TP  S +  R+     R+RR R   SG +  K  R  KR L  
Sbjct: 308 SKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSR 367

Query: 59  SSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
           S S +  +      K K+ R    R R    K+K K +E D+E+   S
Sbjct: 368 SPSPRRHKKEKKKDKDKE-RSRDERERSTSKKKKSKDKEKDRERKSES 414



 Score = 37.7 bits (86), Expect = 0.002
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 7/86 (8%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGP 80
           STS T+ +KK +   ++RS++  K   T R+++     S  ++   + +    PKK R P
Sbjct: 306 STSKTRDKKK-EDKEKKRSKTPPKSYSTARRSRS---ASRERRRRRSRSGTRSPKKPRSP 361

Query: 81  ---ILRGRYHRLKEKMKKEEADKEQS 103
              + R    R  +K KK++ DKE+S
Sbjct: 362 KRKLSRSPSPRRHKKEKKKDKDKERS 387



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 16  DEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQK-AGETNTP--AG 72
           DE+  STS  K  K  +  R+R+S S     + TR      +G  S+K   E   P   G
Sbjct: 389 DERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETG 448

Query: 73  KPKKARGPILRGRYHRLKE-KMKKEEADKEQSETS 106
            PK     + +G    L+E K+  ++  +E  + S
Sbjct: 449 SPKTKECSVEKGTGDSLRESKVNGDDHHEEDMDMS 483


>gi|168229156 NFKB activating protein [Homo sapiens]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 18/111 (16%)

Query: 8   PQKPNEDVDEQTP-----------STSSTKGRKKGKTPRQR-RSRSGVKGLKTTRKAKRP 55
           P+ P  D DE TP           S S+++  KK K+ R + RS+   K   + RK K+ 
Sbjct: 150 PKNPEPDSDEHTPVEDEEPKKSTTSASTSEEEKKKKSSRSKERSKKRRKKKSSKRKHKKY 209

Query: 56  LRGSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
              S S    ET++     K+      R +  + KEK KK  + K + + S
Sbjct: 210 SEDSDSDSDSETDSSDEDNKR------RAKKAKKKEKKKKHRSKKYKKKRS 254


>gi|122939208 nuclear antigen Sp100 isoform 1 [Homo sapiens]
          Length = 885

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/102 (27%), Positives = 46/102 (45%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           +E  + ++ +D      +ST  +  GK  ++RR RS V GL+  RK  RP +  +     
Sbjct: 506 TESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKV 565

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSV 107
           +      + +KA    L+ R  R     K E  + +QSE  V
Sbjct: 566 QKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSELPV 607


>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
          Length = 879

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/102 (27%), Positives = 46/102 (45%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           +E  + ++ +D      +ST  +  GK  ++RR RS V GL+  RK  RP +  +     
Sbjct: 506 TESSQASDMMDTMDVENNSTLEKHSGKRRKKRRHRSKVNGLQRGRKKDRPRKHLTLNNKV 565

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSV 107
           +      + +KA    L+ R  R     K E  + +QSE  V
Sbjct: 566 QKKRWQQRGRKANTRPLKRRRKRGPRIPKDENINFKQSELPV 607


>gi|56090620 NFKB activating protein-like [Homo sapiens]
          Length = 402

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLR---GS 59
           ++ S+   P ED +E T   SS+      +  +++ SRS  K  +  + +KR  R    S
Sbjct: 145 QLDSDEHTPVEDEEEVTHQKSSSSDSNSEEHRKKKTSRSRNKKKRKNKSSKRKHRKYSDS 204

Query: 60  SSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
            S    +TN+ +   KK      + +  + K K KK +  K++S  S
Sbjct: 205 DSNSESDTNSDSDDDKKRVKAKKKKKKKKHKTKKKKNKKTKKESSDS 251


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 22  TSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGPI 81
           T + +GR + +TP +RRSRS     + +R      RG S      + TPA +  + R P+
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS-----RSRTPARRRSRTRSPV 631

Query: 82  LRGRYHRLKEKMKKEEADKEQSET 105
            R    R + +     + + +S T
Sbjct: 632 RR----RSRSRSPARRSGRSRSRT 651



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 20/70 (28%), Positives = 31/70 (44%)

Query: 10   KPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNT 69
            KP+    E++ S SS   + K +TP ++RSRSG      ++    P R  S       + 
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDK 1607

Query: 70   PAGKPKKARG 79
            P   P+   G
Sbjct: 1608 PRAAPRAQSG 1617



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 7   EPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRK---AKRPLRGSSSQK 63
           EP KP   V E + S S T  +KK K  + R  RS     +  RK    K+  R  S  K
Sbjct: 166 EPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESK 225

Query: 64  AGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
             +  +P  K K+      R R        K   A +  S  S
Sbjct: 226 KRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADS 268



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 6    SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
            S P+ P +    +  S SS + + K +TP +RRS      L  TRKA+   R  S+  + 
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPEL--TRKARLSRRSRSASSSP 1714

Query: 66   ETNTPAGKPKKARGP 80
            ET +    P+  R P
Sbjct: 1715 ETRSRT-PPRHRRSP 1728



 Score = 32.7 bits (73), Expect = 0.065
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 10/83 (12%)

Query: 8   PQKP----NEDVDEQTPSTSSTKGRKKGKTPRQR-RSRSGVKGLKTTRKAKRPLRGSSSQ 62
           PQ+P    + +   +  S S+ +GR   ++P  R RSRS     +   +++ P R  S  
Sbjct: 537 PQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRS 596

Query: 63  KAGETNTPAGKPKKARGPILRGR 85
           +     TP  +  ++R P  RGR
Sbjct: 597 R-----TPTRRRSRSRTPARRGR 614



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQR-RSRSGVKGLKTTRKAKRPLRGSSSQKA 64
           S    P+  +       ++ +GR + +TP +R  SRS     + +R A+R  R  S Q+ 
Sbjct: 472 SHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRR 531

Query: 65  GETNTPAGKP--KKARGPILRGR 85
           G + +P  +P   ++R    RGR
Sbjct: 532 GRSRSPQ-RPGWSRSRNTQRRGR 553



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 22  TSSTKGRKKGKTPRQR--RSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARG 79
           T + +GR + +TP +R  RSRS     +   +++ P RG S  +   +    G+   +R 
Sbjct: 662 TPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSR---SLVRRGR-SHSRT 717

Query: 80  PILRGRYHRLKEKMKKEEADKEQSETS 106
           P  RGR     E+  K    + +S ++
Sbjct: 718 PQRRGRSGSSSERKNKSRTSQRRSRSN 744



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 22  TSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLR----GSSSQKAGETNTPAGKPKKA 77
           T + +GR + +TPR+ RSRS     +    ++ P R    GSSS++  ++ T   + +  
Sbjct: 685 TPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSN 744

Query: 78  RGPILR 83
             P ++
Sbjct: 745 SSPEMK 750



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 5    TSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKA 64
            T   ++ +     Q+ S    + R + +  R+RR  SG       R+     R SS ++ 
Sbjct: 1782 TRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESS--RTSSRRRR 1839

Query: 65   GETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108
            G + TP    K++R       + R + +       + +S T ++
Sbjct: 1840 GRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLI 1883



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGP 80
           S +  + R + +TP +RRSRS     +   +++ P R     +   T +P  +  ++R P
Sbjct: 586 SRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPAR-----RRSRTRSPVRRRSRSRSP 640

Query: 81  ILRGRYHRLKEKMKK 95
             R    R +   ++
Sbjct: 641 ARRSGRSRSRTPARR 655



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 15/86 (17%)

Query: 18   QTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKA 77
            ++PS SS +  +K ++ R+RRS S  +   T+R+ +               +P+ KP+  
Sbjct: 1726 RSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR---------------SPSPKPRGL 1770

Query: 78   RGPILRGRYHRLKEKMKKEEADKEQS 103
            +    R R  + +   +++ +   QS
Sbjct: 1771 QRSRSRSRREKTRTTRRRDRSGSSQS 1796



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 17   EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKK 76
            +++  TSS + R + +TP   R RS  +      K  R     ++ +   + TP    ++
Sbjct: 1828 QESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRR 1887

Query: 77   AR---GPILRGR 85
            +R    P+ R R
Sbjct: 1888 SRSRTSPVSRRR 1899



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)

Query: 17   EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKK 76
            E++ S SS   +   +TP  +RSRSG       + +  P   S S  + ++      P +
Sbjct: 1515 ERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLR 1574

Query: 77   AR 78
             R
Sbjct: 1575 QR 1576



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 1    MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60
            + +V S    P E V E  P   +   RK+  +     S S      ++  +      SS
Sbjct: 2576 LKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2635

Query: 61   SQKAGETNTPAGKPKKAR-GP 80
            S  +  +++ +  P  A+ GP
Sbjct: 2636 SSSSSSSSSSSSSPSPAKPGP 2656



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 8   PQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGET 67
           P++ ++    ++ S SS    K    PR+ RS S        +K+K P R S S  +   
Sbjct: 786 PKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSP---PPKQKSKTPSRQSHSSSSPHP 842

Query: 68  NTPAGKPKK 76
              +G P +
Sbjct: 843 KVKSGTPPR 851


>gi|4885379 histone cluster 1, H1e [Homo sapiens]
          Length = 219

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 25/90 (27%), Positives = 33/90 (36%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQ 62
           K     +KP +     TP  S+ K  KK K P         K  K  + AK      S  
Sbjct: 130 KPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAKPKKAPKSPA 189

Query: 63  KAGETNTPAGKPKKARGPILRGRYHRLKEK 92
           KA      A KPK A+    + +    K+K
Sbjct: 190 KAKAVKPKAAKPKTAKPKAAKPKKAAAKKK 219


>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
          Length = 1007

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 40/124 (32%)

Query: 13  EDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRP-LRGSSSQKAGETNTPA 71
           E V E+T + S +K RKK K+P +R      K     RK+K P LR  S +K G+  +P 
Sbjct: 206 EIVKEKT-TRSKSKERKKSKSPSKRS-----KSQDQARKSKSPTLRRRSQEKIGKARSPT 259

Query: 72  ---------------------------GKPKKARGPI-LRG----RYHRLKE-KMKKEEA 98
                                       + KK+R P+ LRG    R  R KE K K+ E 
Sbjct: 260 DDKVKIEDKSKSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSET 319

Query: 99  DKEQ 102
           DKE+
Sbjct: 320 DKEK 323



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 13/109 (11%)

Query: 3   KVTSEPQKPNEDV-------DEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRP 55
           +++S   +P +D+        + +P    +  R++ ++P +RRSRS +      R+++ P
Sbjct: 408 RLSSPRTRPRDDILSRRERSKDASPINRWSPTRRRSRSPIRRRSRSPL------RRSRSP 461

Query: 56  LRGSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
            R S S +  +    +    + R     GR  R + K+K+++     SE
Sbjct: 462 RRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKEDKFKGSLSE 510



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 20/123 (16%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQ----------RRSRSGVKGLKT--TR 50
           KV  E +  ++D  +++P  + ++ R +GK  R           RRSRS  +  K   T 
Sbjct: 262 KVKIEDKSKSKD-RKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRSETD 320

Query: 51  KAKRPLRGSSSQKAG--ETNTPAGKP-----KKARGPILRGRYHRLKEKMKKEEADKEQS 103
           K K+P++  S   +   E  +P+ +P     +++  P  R +  R +  +  +   K+  
Sbjct: 321 KEKKPIKSPSKDASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSK 380

Query: 104 ETS 106
             S
Sbjct: 381 SPS 383


>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
          Length = 360

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 1/100 (1%)

Query: 6   SEPQKPNEDVD-EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKA 64
           SE +K     D  +  S S+++GRK    P    S S     ++ +KA+R  R SSS  +
Sbjct: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTRSSSSSSS 203

Query: 65  GETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
             +++ +     +      GR  R K K K+ +  K++ +
Sbjct: 204 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 243



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 17  EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKK 76
           E +PS   T+   + K   +RR+RS      ++  +      SSS  +  +++  G+ K+
Sbjct: 176 EASPSPCITE---RSKQKARRRTRSSSSSSSSSSSS-----SSSSSSSSSSSSSDGRKKR 227

Query: 77  ARGPILRGRYHRLKEKMKKEEADKEQSE 104
            +    R +  + ++K+KK+  +K +++
Sbjct: 228 GKYKDKRRKKKKKRKKLKKKGKEKAEAQ 255


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 9   QKPNEDVDEQTPSTSSTKGRKKGKTPRQ---RRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           +K  +D   +TP  S    R+   + R+   RRSRS  +  +T++  KR  + S S    
Sbjct: 469 EKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR--KSSRSPSPR 526

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
             N    K +K R  I   R       M+K   D++  E
Sbjct: 527 SRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKE 565



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGP 80
           S S  K R++ K+P ++RS+S  +    +R   R  R  + +K  E      K ++    
Sbjct: 341 SRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERE 400

Query: 81  ILRGRYHRLKEKMKKEEADKEQSE 104
             + R  + KE+ K ++ DKE+ +
Sbjct: 401 REKER-EKEKERGKNKDRDKEREK 423



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQ-----RRSRSGVKGLKTTRKAKRPLR 57
           K   + ++   + D         K  KK +TP +     RRSRS      ++R+ +R   
Sbjct: 449 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS------SSRERRRRRS 502

Query: 58  GSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
            SSS+    + T   K  ++  P  R +  + +EK +   +++ + E S
Sbjct: 503 RSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERS 551


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 9   QKPNEDVDEQTPSTSSTKGRKKGKTPRQ---RRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           +K  +D   +TP  S    R+   + R+   RRSRS  +  +T++  KR  + S S    
Sbjct: 353 EKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR--KSSRSPSPR 410

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
             N    K +K R  I   R       M+K   D++  E
Sbjct: 411 SRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKE 449



 Score = 33.9 bits (76), Expect = 0.029
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGP 80
           S S  K R++ K+P ++RS+S  +    +R   R  R  + +K  E      K ++    
Sbjct: 225 SRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKERE 284

Query: 81  ILRGRYHRLKEKMKKEEADKEQSE 104
             + R  + KE+ K ++ DKE+ +
Sbjct: 285 REKER-EKEKERGKNKDRDKEREK 307



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQ-----RRSRSGVKGLKTTRKAKRPLR 57
           K   + ++   + D         K  KK +TP +     RRSRS      ++R+ +R   
Sbjct: 333 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRS------SSRERRRRRS 386

Query: 58  GSSSQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
            SSS+    + T   K  ++  P  R +  + +EK +   +++ + E S
Sbjct: 387 RSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERS 435


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 14/100 (14%)

Query: 17  EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTR-------KAKRPLRGSSSQKAGETNT 69
           E+    S ++GR + K+ RQ RSRS  KG   +R       K KR  R  S +++   + 
Sbjct: 310 EEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSR 369

Query: 70  PAGKPKKARGPILRGRYHRLK----EKMKKEEADKEQSET 105
              K +++R    RG     K    +K KKE+ D+ QS +
Sbjct: 370 SRSKSERSR---KRGSKRDSKAGSSKKKKKEDTDRSQSRS 406



 Score = 34.7 bits (78), Expect = 0.017
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 18  QTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRK-AKRPLRGSSSQKAGETNTPAGKPKK 76
           ++ S    KGRK+ +   + RSRS  K  ++ ++ +KR  +  SS+K  + +T   + + 
Sbjct: 347 RSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRS 406

Query: 77  ARGPILRGRYHRLKEKMKKE 96
               + + R H   E  ++E
Sbjct: 407 PSRSVSKEREHAKSESSQRE 426



 Score = 33.5 bits (75), Expect = 0.038
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPA---GKPKKA 77
           S S ++ R + +  R+ RSRSG      ++   R   GS S+    + + +    K +K+
Sbjct: 188 SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKS 247

Query: 78  RGPILRGRYHRLKEKMKKEEADKEQSETSV 107
           R P       R     K     K+Q+E  +
Sbjct: 248 RSPSKEKSRSRSHSAGKSRSKSKDQAEEKI 277


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 8   PQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTR-KAKRPLRGSSSQKA-G 65
           P+K      E+  S +  K  +K K+P +  ++S  +     + +AK P    S +KA  
Sbjct: 581 PEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKS 640

Query: 66  ETNTPAGKPKKARGPILRGRY--HRLKEKMKKEEADKEQSETSV 107
            T   A  P+KA+ P         + K  +K E    E++++ V
Sbjct: 641 PTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPV 684



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 7   EPQKPNEDVDEQ--TPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKA 64
           E + P +   E+  +P     K  +K K+P +  +++  K +    + K P++     + 
Sbjct: 773 EARSPADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQE 832

Query: 65  GETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQS 103
            +   P  K ++ + P         K+  KKEEA K+++
Sbjct: 833 VKVKEPPKKAEEEKAPATPKTEE--KKDSKKEEAPKKEA 869



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 3   KVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLK--TTRKAKRPLRGSS 60
           KV   P+K  E+    TP T   K  KK + P++   +  V+  K     K K     + 
Sbjct: 834 KVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAK 893

Query: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEK---MKKEEADKEQSETS 106
            ++A +        K+A   +      + KEK    KKE  D +  E S
Sbjct: 894 KEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPS 942



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 17/106 (16%)

Query: 4   VTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTR-KAKRPLRGSSSQ 62
           V +E + P +    ++P  +  K  +K K+P +  ++S  K     + +AK P +  S  
Sbjct: 670 VKAEAKSPEK---AKSPVKAEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPV 726

Query: 63  KAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108
           K       A  P+KA+ P+        KE+ K  E  K   +   L
Sbjct: 727 K-----EEAKTPEKAKSPV--------KEEAKSPEKAKSPEKAKTL 759



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 7    EPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVK-GLKTTRKAKRPLRGSSSQKAG 65
            EP KP E   E  P    TK  K  K   + ++ +  K   KT  K     +   ++K+ 
Sbjct: 940  EPSKPAEK-KEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAEKAEKSS 998

Query: 66   ETNTPAGKP 74
             T+    KP
Sbjct: 999  STDQKDSKP 1007


>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 248

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 24  STKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGPILR 83
           +TK +KK KT  +++ ++  K  KTT K K+  R ++++K   T T   + +K +     
Sbjct: 31  TTKKKKKKKTTMKKKKKTTTKK-KTTTKTKK--RTTTTKKTTTTTTKEKEKEKEKEKEKE 87

Query: 84  GRYHRLKEKMKKEEADKEQSE 104
               + KEK KK++  K++ +
Sbjct: 88  KEKEKEKEKEKKKKKKKKKKK 108


>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
          Length = 352

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           SE +K     D     ++ST   +K  T      RS  K  + TR +      SSS  + 
Sbjct: 144 SEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSS 203

Query: 66  ETNTPAGKP---KKARGPILRGRYHRLKEKMKKEEADKEQSE 104
            +++ +      +K RG     R  + K++ K ++  KE++E
Sbjct: 204 SSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 245


>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
           sapiens]
          Length = 351

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 23  SSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPA-----GKPKKA 77
           + ++G    K  RQ+ + +GVK    +R  K+PLRG   Q+    NT +      KP+KA
Sbjct: 227 AKSRGGGDKKLERQKAALTGVK----SRGDKKPLRGGKKQRERGQNTKSRGGGGEKPQKA 282

Query: 78  RGPILRGRYHRLKEKMKKEEADKEQS 103
                + R  R  EK +K EA + Q+
Sbjct: 283 AAAGAKSRGGR-GEKPQKAEAGQGQN 307


>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 9   QKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETN 68
           +K  E  ++Q       K RKK +  R+ R R   +G +  ++ KR  +    +K  E N
Sbjct: 120 RKERERENKQRRERKRKKRRKKKR--RKERKREKERGKRERKRKKR--KKEEREKKRERN 175

Query: 69  TPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQ 102
               K ++ R      +  R KE+ KK+E  K++
Sbjct: 176 RKERKKERERKERRERKKERKKERRKKKERKKDR 209



 Score = 32.7 bits (73), Expect = 0.065
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 20  PSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARG 79
           P T     RKK +  R++R R   K     RK +R  +    +K  E      + +K R 
Sbjct: 28  PCTQRESERKKERREREKRKREREK----ERKRERGKKEKKKRKKRERGKERERKRKERE 83

Query: 80  PILRGRYHRLKEKMKKEEADKEQSE 104
              + R  + + K KKE+  +E+ +
Sbjct: 84  KQRKERREKERRKRKKEKKKRERKQ 108



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           SE +K   + +++       + R++GK  +++R +   +G +  RK K   +    ++  
Sbjct: 34  SERKKERREREKRKREREKERKRERGKKEKKKRKKRE-RGKERERKRKEREKQRKERREK 92

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKE 96
           E      K KK R    RGR  R K+K +KE
Sbjct: 93  ERRKRK-KEKKKRERKQRGRRERKKKKERKE 122



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 26  KGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGPILR-- 83
           K R+K K  +++R R      +  +K +R  R   +++  E      + KK R    R  
Sbjct: 92  KERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREK 151

Query: 84  --GRYHRLKEKMKKEEADKEQ 102
             G+  R ++K KKEE +K++
Sbjct: 152 ERGKRERKRKKRKKEEREKKR 172



 Score = 28.9 bits (63), Expect = 0.93
 Identities = 20/98 (20%), Positives = 42/98 (42%)

Query: 7   EPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGE 66
           E +K  ++  ++       + RKK K  ++R   +  +  +  +K ++  R    ++  E
Sbjct: 93  ERRKRKKEKKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKE 152

Query: 67  TNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
                 K KK +      +  R +++ KKE   KE+ E
Sbjct: 153 RGKRERKRKKRKKEEREKKRERNRKERKKERERKERRE 190



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 26  KGRKKGKTPRQRRSRSGV------KGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARG 79
           +GR++ K  ++R+ R         +  K  RK KR       ++ G+      K KK   
Sbjct: 109 RGRRERKKKKERKERERENKQRRERKRKKRRKKKRRKERKREKERGKRERKRKKRKKEER 168

Query: 80  PILR--GRYHRLKEKMKKEEADKEQ 102
              R   R  R KE+ +KE  ++++
Sbjct: 169 EKKRERNRKERKKERERKERRERKK 193


>gi|221307607 RANBP2-like and GRIP domain containing 3 [Homo sapiens]
          Length = 1758

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 14   DVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKT------TRKAKRPLRGSSSQKAGET 67
            D+  QTP      GR      R    +SG+K  KT      T+ A+   +GS +  AG +
Sbjct: 1173 DIPLQTPHKLVDTGRAAKLIQRAEEMKSGLKDFKTFLTNDQTKVAEEENKGSGTGAAGAS 1232

Query: 68   NTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETSV 107
            +T      +  GP L    + L+E    +  D   S +SV
Sbjct: 1233 DTTIKPNAENTGPTLEWDNYDLRE----DALDDSVSSSSV 1268


>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 7   EPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGE 66
           E ++  E   ++       + R++ K  R++ ++ G +  K  +K K+  RG +S++  E
Sbjct: 74  EKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKE-RGRTSKEGKE 132

Query: 67  TNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
                 + ++ R    R +  R KE+ +KE   +E+ +
Sbjct: 133 RERKEERKREERKERERKKEEREKERERKERKKRERKQ 170



 Score = 32.3 bits (72), Expect = 0.084
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 5   TSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTT---RKAKRPLRGSSS 61
           TS+  K  E  +E+       + RKK +  ++R  +   K  +     ++ +R  +    
Sbjct: 126 TSKEGKERERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKE 185

Query: 62  QKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
           +K  E N    K ++ R    + R  R KE+ KKEE  KE+ +
Sbjct: 186 RKKRERNRKERKKERER----KERRERKKERKKKEERKKERQK 224



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 1   MAKVTSEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS 60
           ++K  ++P   +E  + +    +  +G+K+ ++ R++  R   K  +   K ++  RG  
Sbjct: 25  ISKPCTQPGWQSEIREREREIETRKEGKKERESERKKERREREKRKREREKERKRERG-K 83

Query: 61  SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
            +K GE      + KK R      +    KEK KK+E  KE+  TS
Sbjct: 84  KEKKGERKKEERERKKRRRE-KENKEGEEKEKRKKKE-KKERGRTS 127



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 17  EQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKK 76
           E+       +G+K+ K  R++  R      K  R+ K    G   +K  +      K KK
Sbjct: 72  EREKERKRERGKKEKKGERKKEERE----RKKRRREKENKEGEEKEKRKK------KEKK 121

Query: 77  ARGPILR-GRYHRLKEKMKKEEADKEQ 102
            RG   + G+    KE+ K+EE  + +
Sbjct: 122 ERGRTSKEGKERERKEERKREERKERE 148


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
           sapiens]
          Length = 1912

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 21/114 (18%)

Query: 9   QKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSS-------- 60
           + P ED+ E    T   K +KK K PR  +     +  K      R L  SS        
Sbjct: 37  EDPEEDLSET--ETPKLKKKKKPKKPRDPKIPKSKRQKKERMLLCRQLGDSSGEGPEFVE 94

Query: 61  --------SQKAGETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSETS 106
                   S   G   TP  K KK  GP    +  + K K K+EE +++  + S
Sbjct: 95  EEEEVALRSDSEGSDYTPGKKKKKKLGP---KKEKKSKSKRKEEEEEEDDDDDS 145


>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
           sapiens]
          Length = 1075

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 5   TSEPQKPNEDVDEQTPSTSST-KGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQK 63
           TS   +P     +QT S  ST K R + K PR +  R+   G  T + +K P    ++  
Sbjct: 449 TSPEMQPTTPAPQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPA 508

Query: 64  AGETNTPAGKPKKARGP 80
            G+T   + KPK    P
Sbjct: 509 PGKTQFISLKPKIPLSP 525


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 24  STKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGPILR 83
           S K +KK +    R   +     ++ +KA+R  R SSS  +  +++ +     +      
Sbjct: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203

Query: 84  GRYHRLKEKMKKEEADKEQSE 104
           GR  R K K K+ +  K++ +
Sbjct: 204 GRKKRGKYKDKRRKKKKKRKK 224



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           SE +K     D     ++ST  +++ K   +RR+RS      ++  +      SSS  + 
Sbjct: 144 SEKRKKKSRKDTSRNCSASTS-QERSKQKARRRTRSSSSSSSSSSSS-----SSSSSSSS 197

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
            +++  G+ K+ +    R +  + ++K+KK+  +K +++
Sbjct: 198 SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 19/81 (23%), Positives = 37/81 (45%)

Query: 24  STKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGPILR 83
           S K +KK +    R   +     ++ +KA+R  R SSS  +  +++ +     +      
Sbjct: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203

Query: 84  GRYHRLKEKMKKEEADKEQSE 104
           GR  R K K K+ +  K++ +
Sbjct: 204 GRKKRGKYKDKRRKKKKKRKK 224



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/99 (21%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 6   SEPQKPNEDVDEQTPSTSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAG 65
           SE +K     D     ++ST  +++ K   +RR+RS      ++  +      SSS  + 
Sbjct: 144 SEKRKKKSRKDTSRNCSASTS-QERSKQKARRRTRSSSSSSSSSSSS-----SSSSSSSS 197

Query: 66  ETNTPAGKPKKARGPILRGRYHRLKEKMKKEEADKEQSE 104
            +++  G+ K+ +    R +  + ++K+KK+  +K +++
Sbjct: 198 SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236


>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
          Length = 2663

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 17   EQTPSTSSTKGRKKGKTPRQRRSRSGVK--GLKTTRKAKRPLRGSSSQKAGETNTPAGKP 74
            ++  +  S K R+ G+   +   R  +K  G ++  K K         +  E + PA + 
Sbjct: 950  DRKDALESCKERRDGRAKPEEAHREELKECGCESGFKDKSDGDFGKGLEPWERHHPAREK 1009

Query: 75   KKARGPILRGRYHRLKEKMKKEEADKEQSETSVL 108
            +K  GP    +     E+ K++ +DK++SE S+L
Sbjct: 1010 EKKDGPDKERKEKTKPERYKEKSSDKDKSEKSIL 1043



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 28   RKKGKTPRQRRSRSGV------KGLKTTRKAKRPLRGSSSQK------AGETNTPAGKPK 75
            R+K K PR RR   G       K  K   K K      S++K          ++   K  
Sbjct: 1175 RQKDKEPRDRRKDRGAADAGRDKKEKVFEKHKEKKDKESTEKYKDRKDRASVDSTQDKKN 1234

Query: 76   KARGPILRGRYHRLKEKMK---KEEADKEQSE 104
            K + P    + H  ++K K   KE++DKE S+
Sbjct: 1235 KQKLPEKAEKKHAAEDKAKSKHKEKSDKEHSK 1266


>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
          Length = 1271

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 10/75 (13%)

Query: 21  STSSTKGRKKGKTPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKAGETNTPAGKPKKARGP 80
           S S T  R + ++PR+RRSRS     K  RK ++  R  S ++  +++      ++AR  
Sbjct: 398 SRSRTHSRSRSRSPRKRRSRSRSGSRK--RKHRKRSRSRSRERKRKSSRSYSSERRAR-- 453

Query: 81  ILRGRYHRLKEKMKK 95
                  R KE+ KK
Sbjct: 454 ------EREKERQKK 462


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 1828

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 9   QKPNEDVDEQTPSTSSTKGRKKGK----TPRQRRSRSGVKGLKTTRKAKRPLRGSSSQKA 64
           Q+P+ED  EQ  S  S   +KK K     PR+   +  VK    T++ KR  + SS +  
Sbjct: 153 QEPSEDEQEQGTSAESEPEQKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDD 212

Query: 65  GETNTPAGKPKK 76
            +   P  + ++
Sbjct: 213 DDDEAPKRQTRR 224


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.301    0.120    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,436,452
Number of Sequences: 37866
Number of extensions: 203803
Number of successful extensions: 1448
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 525
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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